Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G512.5 Capsicum annuum HOM05D003749 ORTHO05D004421 4.8e-48 194.1 96 100.0
Solyc02g089820.4 Solanum lycopersicum HOM05D003749 ORTHO05D004421 9.5e-28 126.7 67 89.6
Sopen02g034510 Solanum pennellii HOM05D003749 ORTHO05D004421 9.5e-28 126.7 67 89.6
PGSC0003DMG400010046 Solanum tuberosum HOM05D003749 ORTHO05D004421 9.5e-28 126.7 67 89.6
CAN.G497.5 Capsicum annuum HOM05D003749 ORTHO05D004421 1.2e-27 126.3 67 91.0
Nitab4.5_0009272g0030 Nicotiana tabacum HOM05D003749 ORTHO05D004421 1.4e-26 122.9 67 86.6
Nitab4.5_0003461g0020 Nicotiana tabacum HOM05D003749 ORTHO05D004421 2.6e-25 118.6 72 76.4
CiPaw.04G040000 Carya illinoinensis HOM05D003749 ORTHO05D004421 4.4e-25 117.9 67 79.1
Peaxi162Scf01056g00243 Petunia axillaris HOM05D003749 ORTHO05D004421 7.5e-25 117.1 67 80.6
Peaxi162Scf00479g00114 Petunia axillaris HOM05D003749 ORTHO05D004421 1.3e-24 116.3 67 80.6
CiPaw.03G059000 Carya illinoinensis HOM05D003749 ORTHO05D004421 2.2e-24 115.5 67 77.6
Hma1.2p1_0550F.1_g177200 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 2.2e-24 115.5 67 79.1
Hma1.2p1_0550F.1_g177205 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 2.2e-24 115.5 67 79.1
Dinv33926 Davidia involucrata HOM05D003749 ORTHO05D004421 3.7e-24 114.8 67 76.1
Nn3g17694 Nelumbo nucifera HOM05D003749 ORTHO05D004421 3.7e-24 114.8 67 76.1
Cc07_g05070 Coffea canephora HOM05D003749 ORTHO05D004421 6.4e-24 114.0 68 73.5
Atru.chr2.1608 Acer truncatum HOM05D003749 ORTHO05D004421 8.3e-24 113.6 65 76.9
TAR629G3198 Trochodendron aralioides HOM05D003749 ORTHO05D004421 8.3e-24 113.6 67 77.6
Atru.chr8.949 Acer truncatum HOM05D003749 ORTHO05D004421 1.1e-23 113.2 67 76.1
PGR042G1179 Punica granatum HOM05D003749 ORTHO05D004421 1.1e-23 113.2 67 74.6
Nn4g23700 Nelumbo nucifera HOM05D003749 ORTHO05D004421 1.9e-23 112.5 67 74.6
CANSAT64G0170 Cannabis sativa HOM05D003749 ORTHO05D004421 4.1e-23 111.3 67 73.1
SGA_v2.0_scaffold62G21545 Striga asiatica HOM05D003749 ORTHO05D004421 4.1e-23 111.3 67 74.6
ClCG11G005320 Citrullus lanatus HOM05D003749 ORTHO05D004421 5.4e-23 110.9 67 74.6
MELO3C022086.2 Cucumis melo HOM05D003749 ORTHO05D004421 5.4e-23 110.9 67 74.6
CsaV3_5G039100 Cucumis sativus L. HOM05D003749 ORTHO05D004421 5.4e-23 110.9 67 74.6
Sed0006006 Sechium edule HOM05D003749 ORTHO05D004421 5.4e-23 110.9 67 74.6
TAR374G0647 Trochodendron aralioides HOM05D003749 ORTHO05D004421 5.4e-23 110.9 67 77.6
Cfa007953 Carpinus fangiana HOM05D003749 ORTHO05D004421 1.2e-22 109.8 67 73.1
Lalb_Chr16g0376641 Lupinus albus HOM05D003749 ORTHO05D004421 1.2e-22 109.8 67 73.1
Potri.017G111900 Populus trichocarpa HOM05D003749 ORTHO05D004421 1.2e-22 109.8 67 74.6
Actinidia18121 Actinidia chinensis HOM05D003749 ORTHO05D004421 1.6e-22 109.4 67 74.6
Haze_14116 Corylus avellana HOM05D003749 ORTHO05D004421 1.6e-22 109.4 66 74.2
Haze_14122 Corylus avellana HOM05D003749 ORTHO05D004421 1.6e-22 109.4 66 74.2
Ca_24455_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 2.1e-22 109.0 67 73.1
Cpa.g.sc179.30 Carica papaya HOM05D003749 ORTHO05D004421 2.7e-22 108.6 67 74.6
LjContig00222g0005460 Lotus japonicus HOM05D003749 ORTHO05D004421 2.7e-22 108.6 67 71.6
arahy.Tifrunner.gnm1.ann1.G4J1DJ Arachis hypogaea HOM05D003749 ORTHO05D004421 3.5e-22 108.2 67 71.6
Lalb_Chr09g0320331 Lupinus albus HOM05D003749 ORTHO05D004421 3.5e-22 108.2 67 73.1
MSTRG.3390 Avicennia marina HOM05D003749 ORTHO05D004421 4.6e-22 107.8 67 74.6
arahy.Tifrunner.gnm1.ann1.M5A7E6 Arachis hypogaea HOM05D003749 ORTHO05D004421 6.0e-22 107.5 65 72.3
MBI10_g08551_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 7.8e-22 107.1 67 73.1
CSS0049372 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 1.0e-21 106.7 88 60.2
THA.LOC104805552 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 1.0e-21 106.7 67 70.1
Thecc.04G138900 Theobroma cacao HOM05D003749 ORTHO05D004421 1.0e-21 106.7 67 73.1
GSVIVG01036450001 Vitis vinifera HOM05D003749 ORTHO05D004421 1.0e-21 106.7 67 71.6
Hund15121 Selenicereus undatus HOM05D003749 ORTHO05D004421 1.3e-21 106.3 67 71.6
THA.LOC104823870 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 1.3e-21 106.3 67 70.1
ATR0693G122 Amborella trichopoda HOM05D003749 ORTHO05D004421 1.7e-21 105.9 66 72.7
CDE01G0232 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 1.7e-21 105.9 67 71.6
QL02p052938 Quercus lobata HOM05D003749 ORTHO05D004421 1.7e-21 105.9 66 71.2
SalBow1G5732 Salvia bowleyana HOM05D003749 ORTHO05D004421 1.7e-21 105.9 67 68.7
HPP92_000270 Vanilla planifolia HOM05D003749 ORTHO05D004421 2.3e-21 105.5 67 73.1
ATR0053G008 Amborella trichopoda HOM05D003749 ORTHO05D004421 3.0e-21 105.1 72 66.7
Duzib138G1497 Durio zibethinus HOM05D003749 ORTHO05D004421 3.0e-21 105.1 67 73.1
Lalb_Chr19g0139861 Lupinus albus HOM05D003749 ORTHO05D004421 3.0e-21 105.1 67 73.1
A07p32660 Brassica napus HOM05D003749 ORTHO05D004421 3.9e-21 104.8 67 68.7
BraA07t30890Z Brassica rapa HOM05D003749 ORTHO05D004421 3.9e-21 104.8 67 68.7
Ciclev10013059m.g Citrus clementina HOM05D003749 ORTHO05D004421 3.9e-21 104.8 67 70.1
SEGI_14095 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 3.9e-21 104.8 67 70.1
C06p38830 Brassica napus HOM05D003749 ORTHO05D004421 5.1e-21 104.4 67 68.7
BolC6t38976H Brassica oleracea HOM05D003749 ORTHO05D004421 5.1e-21 104.4 67 68.7
MD17G1073500 Malus domestica HOM05D003749 ORTHO05D004421 5.1e-21 104.4 67 70.1
BcaC08g46151 Brassica carinata HOM05D003749 ORTHO05D004421 6.6e-21 104.0 67 70.1
A07p33850 Brassica napus HOM05D003749 ORTHO05D004421 6.6e-21 104.0 67 70.1
C06p43020 Brassica napus HOM05D003749 ORTHO05D004421 6.6e-21 104.0 67 70.1
BraA07t31011Z Brassica rapa HOM05D003749 ORTHO05D004421 6.6e-21 104.0 67 70.1
CSS0022784 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 6.6e-21 104.0 67 71.6
Potri.006G249600 Populus trichocarpa HOM05D003749 ORTHO05D004421 6.6e-21 104.0 67 70.1
Prupe.3G240300 Prunus persica HOM05D003749 ORTHO05D004421 6.6e-21 104.0 67 70.1
BcaB03g15214 Brassica carinata HOM05D003749 ORTHO05D004421 8.6e-21 103.6 67 68.7
BolC6t39133H Brassica oleracea HOM05D003749 ORTHO05D004421 8.6e-21 103.6 67 70.1
CDE02G3838 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 8.6e-21 103.6 67 70.1
Nitab4.5_0002108g0070 Nicotiana tabacum HOM05D003749 ORTHO05D004421 8.6e-21 103.6 95 58.9
Os02g0800100 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 8.6e-21 103.6 65 72.3
Migut.K00859 Erythranthe guttata HOM05D003749 ORTHO05D004421 1.1e-20 103.2 67 68.7
Gorai.004G054900 Gossypium raimondii HOM05D003749 ORTHO05D004421 1.1e-20 103.2 67 70.1
SEGI_36613 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 1.1e-20 103.2 66 68.2
EL10Ac5g11727 Beta vulgaris HOM05D003749 ORTHO05D004421 1.5e-20 102.8 67 70.1
CSS0014522 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 1.5e-20 102.8 67 70.1
COL.COLO4_16198 Corchorus olitorius HOM05D003749 ORTHO05D004421 1.5e-20 102.8 67 71.6
Gohir.A08G044800 Gossypium hirsutum HOM05D003749 ORTHO05D004421 1.5e-20 102.8 67 70.1
BcaB03g15341 Brassica carinata HOM05D003749 ORTHO05D004421 1.9e-20 102.4 67 67.2
AT1G67250 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 2.5e-20 102.1 67 67.2
Duzib268G0352 Durio zibethinus HOM05D003749 ORTHO05D004421 2.5e-20 102.1 67 70.1
MD09G1083200 Malus domestica HOM05D003749 ORTHO05D004421 2.5e-20 102.1 67 68.7
Manes.01G107800 Manihot esculenta HOM05D003749 ORTHO05D004421 2.5e-20 102.1 67 70.1
Zm00001eb258090 Zea mays HOM05D003749 ORTHO05D004421 2.5e-20 102.1 65 69.2
Aa31LG2G3620 Aethionema arabicum HOM05D003749 ORTHO05D004421 3.3e-20 101.7 67 67.2
BcaC03g14820 Brassica carinata HOM05D003749 ORTHO05D004421 3.3e-20 101.7 67 67.2
A02p14100 Brassica napus HOM05D003749 ORTHO05D004421 3.3e-20 101.7 67 67.2
C02p22710 Brassica napus HOM05D003749 ORTHO05D004421 3.3e-20 101.7 72 62.5
BolC2t08424H Brassica oleracea HOM05D003749 ORTHO05D004421 3.3e-20 101.7 67 67.2
Carub.0002s1352 Capsella rubella HOM05D003749 ORTHO05D004421 3.3e-20 101.7 67 67.2
Sp5g22180 Schrenkiella parvula HOM05D003749 ORTHO05D004421 3.3e-20 101.7 67 67.2
unitig_748.g8406 Utricularia gibba HOM05D003749 ORTHO05D004421 3.3e-20 101.7 67 71.6
Rhsim10G0064100 Rhododendron simsii HOM05D003749 ORTHO05D004421 4.3e-20 101.3 85 60.0
CARHR059720 Cardamine hirsuta HOM05D003749 ORTHO05D004421 5.6e-20 100.9 67 65.7
Thhalv10019303m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 5.6e-20 100.9 67 67.2
FAN02G1560 Fragaria x ananassa HOM05D003749 ORTHO05D004421 5.6e-20 100.9 65 69.2
FAN05G0572 Fragaria x ananassa HOM05D003749 ORTHO05D004421 5.6e-20 100.9 65 69.2
FAN14G1502 Fragaria x ananassa HOM05D003749 ORTHO05D004421 5.6e-20 100.9 65 69.2
Gohir.D08G054500 Gossypium hirsutum HOM05D003749 ORTHO05D004421 5.6e-20 100.9 67 68.7
MBI16_g33829_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 5.6e-20 100.9 67 70.1
MBI16_g46925_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 5.6e-20 100.9 67 70.1
SalBow6G0369 Salvia bowleyana HOM05D003749 ORTHO05D004421 5.6e-20 100.9 67 65.7
unitig_32.g10762 Utricularia gibba HOM05D003749 ORTHO05D004421 5.6e-20 100.9 67 71.6
BcaB05g24251 Brassica carinata HOM05D003749 ORTHO05D004421 7.3e-20 100.5 67 67.2
BraA02t06473Z Brassica rapa HOM05D003749 ORTHO05D004421 7.3e-20 100.5 67 67.2
Psat7g171120 Pisum sativum HOM05D003749 ORTHO05D004421 7.3e-20 100.5 67 68.7
Manes.02G066100 Manihot esculenta HOM05D003749 ORTHO05D004421 9.5e-20 100.1 67 68.7
Os03g0583700 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 9.5e-20 100.1 65 67.7
CARHR214090 Cardamine hirsuta HOM05D003749 ORTHO05D004421 1.2e-19 99.8 67 65.7
TPR.G29477 Trifolium pratense HOM05D003749 ORTHO05D004421 1.2e-19 99.8 67 67.2
Ca_04934_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 1.6e-19 99.4 67 68.7
Medtr4g077240 Medicago truncatula HOM05D003749 ORTHO05D004421 1.6e-19 99.4 67 68.7
Migut.H00529 Erythranthe guttata HOM05D003749 ORTHO05D004421 2.1e-19 99.0 67 65.7
Os09g0314900 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 2.1e-19 99.0 65 67.7
vmacro05576 Vaccinium macrocarpon HOM05D003749 ORTHO05D004421 2.1e-19 99.0 90 55.6
TWI39G0894 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 2.8e-19 98.6 67 65.7
Glyma.11G093000 Glycine max HOM05D003749 ORTHO05D004421 3.6e-19 98.2 67 67.2
Glyma.12G019300 Glycine max HOM05D003749 ORTHO05D004421 3.6e-19 98.2 67 67.2
Nitab4.5_0004487g0040 Nicotiana tabacum HOM05D003749 ORTHO05D004421 4.7e-19 97.8 100 53.0
PSO063G3423 Papaver somniferum HOM05D003749 ORTHO05D004421 4.7e-19 97.8 69 65.2
TWI38G0800 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 4.7e-19 97.8 67 64.2
AT5G38650 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 6.2e-19 97.4 67 65.7
AT5G38660 Arabidopsis thaliana HOM05D006042 ORTHO05D007658 6.2e-19 97.4 67 65.7
Carub.0007s3721 Capsella rubella HOM05D003749 ORTHO05D004421 6.2e-19 97.4 67 65.7
TWI38G0650 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 6.2e-19 97.4 67 65.7
Thhalv10027984m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 8.1e-19 97.1 67 64.2
unitig_748.g8606 Utricularia gibba HOM05D000345 ORTHO05D000215 8.1e-19 97.1 91 57.1
AUR62042069 Chenopodium quinoa HOM05D003749 ORTHO05D004421 1.1e-18 96.7 67 68.7
AUR62044332 Chenopodium quinoa HOM05D003749 ORTHO05D004421 1.1e-18 96.7 67 68.7
FvH4_6g45420 Fragaria vesca HOM05D003749 ORTHO05D004421 1.1e-18 96.7 61 70.5
Ah.02g115680 Amaranthus hybridus HOM05D003749 ORTHO05D004421 1.8e-18 95.9 65 67.7
VMungo1127G1849 Vigna mungo HOM05D003749 ORTHO05D004421 1.8e-18 95.9 61 70.5
AUR62040335 Chenopodium quinoa HOM05D003749 ORTHO05D004421 2.3e-18 95.5 67 68.7
Lj3g0004703 Lotus japonicus HOM05D003749 ORTHO05D004421 2.3e-18 95.5 67 67.2
PSO782G4209 Papaver somniferum HOM05D003749 ORTHO05D004421 4.0e-18 94.7 69 63.8
RcHm_v2.0_Chr2g0163251 Rosa chinensis HOM05D003749 ORTHO05D004421 4.0e-18 94.7 65 66.2
Phvul.011G021700 Phaseolus vulgaris HOM05D003749 ORTHO05D004421 5.2e-18 94.4 67 65.7
Pp3c20_8310 Physcomitrium patens HOM05D003749 ORTHO05D004421 5.2e-18 94.4 67 65.7
AagrBONN_evm.TU.Sc2ySwM_344.3948 Anthoceros agrestis HOM05D003749 ORTHO05D004421 6.8e-18 94.0 65 64.6
HanXRQChr14g0448851 Helianthus annuus HOM05D003749 ORTHO05D004421 6.8e-18 94.0 71 64.8
Pp3c23_15440 Physcomitrium patens HOM05D003749 ORTHO05D004421 1.5e-17 92.8 67 64.2
Sc10g0001340 Simmondsia chinensis HOM05D003749 ORTHO05D004421 1.5e-17 92.8 67 62.7
ECA238G2303 Erigeron canadensis HOM05D003749 ORTHO05D004421 4.4e-17 91.3 71 63.4
HanXRQChr12g0385611 Helianthus annuus HOM05D003749 ORTHO05D004421 2.2e-16 89.0 71 62.0
DCAR_007518 Daucus carota HOM05D003749 ORTHO05D004421 2.4e-15 85.5 67 61.2
Lsat_1_v5_gn_2_90800 Lactuca sativa HOM05D003749 ORTHO05D004421 2.4e-15 85.5 65 63.1
Mapoly0073s0035 Marchantia polymorpha HOM05D003749 ORTHO05D004421 2.4e-15 85.5 67 58.2
CBR_g34012 Chara braunii HOM05D003749 ORTHO05D004421 2.7e-14 82.0 65 60.0
Aqoxy3G03894 Aquilegia oxysepala HOM05D003749 ORTHO05D004421 4.6e-14 81.3 69 62.3
AL2G25760 Arabidopsis lyrata HOM05D003749 ORTHO05D004421 1.7e-13 79.3 116 39.7
Atru.chr2.1922 Acer truncatum HOM05D003749 ORTHO05D004421 1.4e-10 69.7 42 73.8
Medtr5g008020 Medicago truncatula HOM05D003749 ORTHO05D004421 2.6e-09 65.5 67 50.7
Sp7g03260 Schrenkiella parvula HOM05D003749 ORTHO05D004421 4.4e-09 64.7 67 49.3
SMO119G0338 Selaginella moellendorffii HOM05D003749 ORTHO05D004421 7.6e-09 63.9 57 54.4
Oeu049327.1 Olea europaea HOM05D003749 ORTHO05D004421 1.3e-08 63.2 40 65.0
Gorai.008G075700 Gossypium raimondii HOM05D000140 ORTHO05D008077 9.3e-07 57.0 34 67.6
Gohir.D12G069201 Gossypium hirsutum HOM05D000140 ORTHO05D008077 2.1e-06 55.8 34 64.7
Dinv34854 Davidia involucrata HOM05D003749 ORTHO05D004421 7.8e-06 53.9 33 75.8


User provided reference genes

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