Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G51.9 Capsicum annuum HOM05D006266 ORTHO05D008016 0.0e+00 1257.7 602 100.0
Solyc12g021170.2 Solanum lycopersicum HOM05D006266 ORTHO05D008016 1.7e-308 1062.0 611 84.5
Sopen12g011050 Solanum pennellii HOM05D006266 ORTHO05D008016 1.0e-292 1009.6 537 88.5
Nitab4.5_0001990g0030 Nicotiana tabacum HOM05D006266 ORTHO05D008016 3.2e-291 1004.6 613 80.6
Nitab4.5_0000505g0020 Nicotiana tabacum HOM05D006266 ORTHO05D008016 8.3e-287 989.9 610 79.5
Peaxi162Scf00184g00418 Petunia axillaris HOM05D006266 ORTHO05D008016 2.0e-269 932.2 618 75.7
Gohir.A10G139200 Gossypium hirsutum HOM05D006266 ORTHO05D008016 9.5e-267 923.3 554 76.9
Thecc.04G175700 Theobroma cacao HOM05D006266 ORTHO05D008016 2.3e-265 918.7 556 76.1
Dinv44175 Davidia involucrata HOM05D006266 ORTHO05D008016 8.9e-265 916.8 576 75.7
Gorai.011G140700 Gossypium raimondii HOM05D006266 ORTHO05D008016 8.3e-263 910.2 565 74.9
Gohir.D10G127600 Gossypium hirsutum HOM05D006266 ORTHO05D008016 5.4e-262 907.5 565 74.5
Prupe.1G197500 Prunus persica HOM05D006266 ORTHO05D008016 5.4e-262 907.5 565 74.5
Duzib151G0889 Durio zibethinus HOM05D006266 ORTHO05D008016 1.0e-260 903.3 556 75.0
Nn7g37595 Nelumbo nucifera HOM05D006266 ORTHO05D008016 1.0e-260 903.3 604 71.2
TAR362G0699 Trochodendron aralioides HOM05D006266 ORTHO05D008016 1.5e-259 899.4 551 75.5
QL10p050722 Quercus lobata HOM05D006266 ORTHO05D008016 2.5e-259 898.7 616 70.5
CANSAT78G1968 Cannabis sativa HOM05D006266 ORTHO05D008016 3.3e-259 898.3 559 74.4
GSVIVG01010835001 Vitis vinifera HOM05D006266 ORTHO05D008016 9.5e-259 896.7 537 76.7
Sabra17G0016500 Salix brachista HOM05D006266 ORTHO05D008016 2.8e-258 895.2 551 74.6
PSO675G5931 Papaver somniferum HOM05D006266 ORTHO05D008016 1.1e-257 893.3 552 76.4
Potri.017G027500 Populus trichocarpa HOM05D006266 ORTHO05D008016 2.3e-257 892.1 610 69.8
Sc19g0002870 Simmondsia chinensis HOM05D006266 ORTHO05D008016 3.1e-257 891.7 593 72.0
Atru.chr4.1256 Acer truncatum HOM05D006266 ORTHO05D008016 8.9e-257 890.2 548 74.3
HanXRQChr01g0023481 Helianthus annuus HOM05D006266 ORTHO05D008016 1.2e-256 889.8 589 72.2
MSTRG.4284 Avicennia marina HOM05D006266 ORTHO05D008016 3.4e-256 888.3 613 70.1
TPR.G18865 Trifolium pratense HOM05D006266 ORTHO05D008016 4.4e-256 887.9 548 74.5
Manes.11G123500 Manihot esculenta HOM05D006266 ORTHO05D008016 1.3e-255 886.3 590 71.0
Cfa015189 Carpinus fangiana HOM05D006266 ORTHO05D008016 8.3e-255 883.6 552 74.6
FvH4_4g10960 Fragaria vesca HOM05D006266 ORTHO05D008016 5.4e-254 880.9 565 72.0
Migut.G01347 Erythranthe guttata HOM05D006266 ORTHO05D008016 1.2e-253 879.8 601 70.2
Psat5g289640 Pisum sativum HOM05D006266 ORTHO05D008016 1.2e-253 879.8 548 73.4
Sed0000993 Sechium edule HOM05D006266 ORTHO05D008016 1.2e-253 879.8 548 74.1
Oeu024477.1 Olea europaea HOM05D006266 ORTHO05D008016 1.6e-253 879.4 599 70.6
Ciclev10019615m.g Citrus clementina HOM05D006266 ORTHO05D008016 2.1e-253 879.0 540 75.0
Lj3g0007796 Lotus japonicus HOM05D006266 ORTHO05D008016 2.1e-253 879.0 543 73.7
Hund12414 Selenicereus undatus HOM05D006266 ORTHO05D008016 2.1e-253 879.0 584 70.7
vmacro00635 Vaccinium macrocarpon HOM05D006266 ORTHO05D008016 2.1e-253 879.0 611 68.7
Ca_01251_v3 Cicer arietinum L. HOM05D006266 ORTHO05D008016 3.5e-253 878.2 547 73.3
Aa31LG1G25150 Aethionema arabicum HOM05D006266 ORTHO05D008016 7.8e-253 877.1 596 69.6
THA.LOC104805138 Tarenaya hassleriana HOM05D006266 ORTHO05D008016 7.8e-253 877.1 581 71.3
ATR0743G015 Amborella trichopoda HOM05D006266 ORTHO05D008016 5.1e-252 874.4 546 73.1
Lalb_Chr14g0372511 Lupinus albus HOM05D006266 ORTHO05D008016 6.6e-252 874.0 573 72.1
MBI07_g02893_MAGBIO Magnolia biondii HOM05D006266 ORTHO05D008016 1.1e-251 873.2 555 72.6
ClCG05G007190 Citrullus lanatus HOM05D006266 ORTHO05D008016 1.5e-251 872.8 640 65.9
CiPaw.02G052400 Carya illinoinensis HOM05D006266 ORTHO05D008016 9.5e-251 870.2 537 74.7
Glyma.15G029200 Glycine max HOM05D006266 ORTHO05D008016 2.8e-250 868.6 578 70.2
RcHm_v2.0_Chr4g0406421 Rosa chinensis HOM05D006266 ORTHO05D008016 2.8e-250 868.6 597 68.5
SGA_v2.0_scaffold17G08154 Striga asiatica HOM05D006266 ORTHO05D008016 2.8e-250 868.6 676 64.2
BraA05t19361Z Brassica rapa HOM05D006266 ORTHO05D008016 1.4e-249 866.3 599 69.3
Lsat_1_v5_gn_1_77821 Lactuca sativa HOM05D006266 ORTHO05D008016 1.8e-249 865.9 571 70.1
BcaC02g12401 Brassica carinata HOM05D006266 ORTHO05D008016 2.3e-249 865.5 610 67.5
PGR142G3304 Punica granatum HOM05D006266 ORTHO05D008016 2.3e-249 865.5 605 68.9
Sp4g25480 Schrenkiella parvula HOM05D006266 ORTHO05D008016 4.0e-249 864.8 568 71.7
C04p04440 Brassica napus HOM05D006266 ORTHO05D008016 5.2e-249 864.4 581 70.2
BolC4t22077H Brassica oleracea HOM05D006266 ORTHO05D008016 5.2e-249 864.4 581 70.2
Thhalv10001353m.g Eutrema salsugineum HOM05D006266 ORTHO05D008016 5.2e-249 864.4 548 72.8
A05p03740 Brassica napus HOM05D006266 ORTHO05D008016 6.8e-249 864.0 566 71.4
DCAR_028531 Daucus carota HOM05D006266 ORTHO05D008016 1.2e-248 863.2 558 73.5
AT2G43400 Arabidopsis thaliana HOM05D006266 ORTHO05D008016 1.5e-248 862.8 563 72.3
Phvul.005G153800 Phaseolus vulgaris HOM05D006266 ORTHO05D008016 3.4e-248 861.7 581 69.4
Eucgr.H00345 Eucalyptus grandis HOM05D006266 ORTHO05D008016 4.4e-248 861.3 537 73.2
Aqoxy2G04160 Aquilegia oxysepala HOM05D006266 ORTHO05D008016 2.2e-247 859.0 540 73.9
AL4G42140 Arabidopsis lyrata HOM05D006266 ORTHO05D008016 2.2e-247 859.0 588 69.6
CDE09G1029 Ceratophyllum demersum HOM05D006266 ORTHO05D008016 3.7e-247 858.2 588 68.5
MD04G1042900 Malus domestica HOM05D006266 ORTHO05D008016 6.4e-247 857.4 609 68.3
Carub.0004s2587 Capsella rubella HOM05D006266 ORTHO05D008016 1.9e-246 855.9 587 69.7
VMungo1080G0961 Vigna mungo HOM05D006266 ORTHO05D008016 1.9e-246 855.9 566 69.3
CARHR138470 Cardamine hirsuta HOM05D006266 ORTHO05D008016 2.4e-246 855.5 597 67.8
FAN17G0658 Fragaria x ananassa HOM05D006266 ORTHO05D008016 3.2e-246 855.1 565 70.8
Actinidia27081 Actinidia chinensis HOM05D006266 ORTHO05D008016 2.7e-245 852.0 551 73.0
arahy.Tifrunner.gnm1.ann1.JU07H9 Arachis hypogaea HOM05D006266 ORTHO05D008016 6.6e-244 847.4 604 67.9
arahy.Tifrunner.gnm1.ann1.D6UD48 Arachis hypogaea HOM05D006266 ORTHO05D008016 3.3e-243 845.1 604 68.2
HPP92_022167 Vanilla planifolia HOM05D006266 ORTHO05D008016 2.8e-242 842.0 573 68.8
ECA248G0977 Erigeron canadensis HOM05D006266 ORTHO05D008016 8.9e-241 837.0 517 74.3
CsaV3_3G015950 Cucumis sativus L. HOM05D006266 ORTHO05D008016 1.4e-238 829.7 524 73.3
Rhsim09G0023000 Rhododendron simsii HOM05D006266 ORTHO05D008016 7.6e-232 807.4 791 54.0
Lj3C32G4 Lonicera japonica HOM05D006266 ORTHO05D008016 3.8e-231 805.1 554 69.5
Cpa.g.sc9.312 Carica papaya HOM05D006266 ORTHO05D008016 1.9e-230 802.7 562 68.7
SMO141G0282 Selaginella moellendorffii HOM05D006266 ORTHO05D008016 5.4e-230 801.2 540 68.7
Lj3C1G0 Lonicera japonica HOM05D006266 ORTHO05D008016 1.2e-229 800.0 612 65.0
Haze_01464 Corylus avellana HOM05D006266 ORTHO05D008016 1.0e-228 797.0 721 56.9
Pp3c26_13090 Physcomitrium patens HOM05D006266 ORTHO05D008016 5.1e-228 794.7 547 67.1
PSO017G5469 Papaver somniferum HOM05D006266 ORTHO05D008016 6.6e-228 794.3 552 69.4
Hma1.2p1_0324F.1_g125550 Hydrangea macrophylla HOM05D006266 ORTHO05D008016 1.5e-227 793.1 467 77.9
Medtr2g099040 Medicago truncatula HOM05D006266 ORTHO05D008016 1.4e-225 786.6 498 72.1
Dinv44151 Davidia involucrata HOM05D006266 ORTHO05D008016 4.5e-224 781.6 479 76.2
Hma1.2p1_0324F.1_g125560 Hydrangea macrophylla HOM05D006266 ORTHO05D008016 1.4e-209 733.4 432 78.2
AUR62023848 Chenopodium quinoa HOM05D006266 ORTHO05D008016 2.4e-209 732.6 553 63.3
AagrBONN_evm.TU.Sc2ySwM_117.3933 Anthoceros agrestis HOM05D006266 ORTHO05D008016 5.7e-203 711.4 538 63.0
Cc03_g11970 Coffea canephora HOM05D006266 ORTHO05D008016 5.2e-172 608.6 348 79.3
Cre02.g094300 Chlamydomonas reinhardtii HOM05D006266 ORTHO05D008016 8.8e-172 607.8 550 53.8
MELO3C006793.2 Cucumis melo HOM05D006266 ORTHO05D008016 4.4e-171 605.5 449 66.1
Mapoly0012s0124 Marchantia polymorpha HOM05D006266 ORTHO05D008016 5.4e-169 598.6 444 62.6
PRCOL_00003135 Prasinoderma coloniale HOM05D006266 ORTHO05D008016 5.7e-163 578.6 589 52.0
AUR62002342 Chenopodium quinoa HOM05D006266 ORTHO05D008016 6.8e-156 555.1 439 61.0
Haze_26227 Corylus avellana HOM05D006266 ORTHO05D008016 2.3e-151 540.0 555 48.1
Haze_26951 Corylus avellana HOM05D006266 ORTHO05D008016 9.5e-150 534.6 595 46.4
Cfa026422 Carpinus fangiana HOM05D006266 ORTHO05D008016 3.4e-147 526.2 545 50.3
Zm00001eb043590 Zea mays HOM05D006266 ORTHO05D008016 5.8e-139 498.8 350 65.7
Ah.07g202330 Amaranthus hybridus HOM05D006266 ORTHO05D008016 1.7e-122 444.1 351 63.2
unitig_52.g17681 Utricularia gibba HOM05D006266 ORTHO05D008016 9.3e-113 411.8 447 51.7
SEGI_14637 Sequoiadendron giganteum HOM05D006266 ORTHO05D008016 6.0e-96 355.9 266 62.8
PGSC0003DMG400014944 Solanum tuberosum HOM05D006266 ORTHO05D008016 1.8e-95 354.4 172 95.3
Ah.07g202340 Amaranthus hybridus HOM05D006266 ORTHO05D008016 8.7e-95 352.1 201 77.6
Eucgr.L02537 Eucalyptus grandis HOM05D006266 ORTHO05D008016 1.5e-91 341.3 202 75.2
Sopen02g004370 Solanum pennellii HOM05D006266 ORTHO05D008016 2.7e-88 330.5 182 85.2
EL10Ac3g06005 Beta vulgaris HOM05D006266 ORTHO05D008016 1.4e-76 291.6 182 74.7
FAN12G3251 Fragaria x ananassa HOM05D006266 ORTHO05D008016 2.5e-73 280.8 197 67.5
Cc03_g11980 Coffea canephora HOM05D006266 ORTHO05D008016 5.7e-70 269.6 171 74.9
CSS0026769 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 2.3e-47 194.5 120 75.0
Os10g0516300 Oryza sativa ssp. japonica HOM05D006266 ORTHO05D008016 1.3e-45 188.7 116 69.8
CSS0016449 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 7.8e-43 179.5 106 77.4
SEGI_11902 Sequoiadendron giganteum HOM05D006266 ORTHO05D008016 4.7e-40 170.2 150 55.3
CSS0001057 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 4.9e-37 160.2 139 61.9
CSS0026763 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 5.0e-34 150.2 139 59.0
SEGI_08796 Sequoiadendron giganteum HOM05D006266 ORTHO05D008016 2.5e-33 147.9 82 75.6
MELO3C006791.2 Cucumis melo HOM05D005231 ORTHO05D006387 4.9e-29 133.7 81 74.1
CSS0001558 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 5.0e-26 123.6 124 55.6
CSS0004821 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 5.0e-26 123.6 124 55.6
SEGI_29623 Sequoiadendron giganteum HOM05D006266 ORTHO05D008016 2.5e-25 121.3 84 65.5
arahy.Tifrunner.gnm1.ann1.QA6FBH Arachis hypogaea HOM05D006266 ORTHO05D008016 1.7e-13 82.0 56 71.4
Lsat_1_v5_gn_7_84681 Lactuca sativa HOM05D006266 ORTHO05D004407 1.2e-11 75.9 51 64.7
CSS0026903 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 1.7e-10 72.0 59 61.0
CSS0016187 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 3.3e-09 67.8 85 47.1
CSS0006121 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 3.6e-08 64.3 36 77.8
Sp4g25500 Schrenkiella parvula HOM05D000001 ORTHO05D000003 6.9e-07 60.1 126 37.3
AUR62006021 Chenopodium quinoa HOM05D001494 ORTHO05D001364 1.2e-06 59.3 42 59.5


User provided reference genes

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