Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G508.2 Capsicum annuum HOM05D004655 ORTHO05D005567 4.4e-124 448.0 227 100.0
Sopen07g028730 Solanum pennellii HOM05D004655 ORTHO05D005567 8.3e-115 417.2 227 93.8
PGSC0003DMG400018330 Solanum tuberosum HOM05D004655 ORTHO05D005567 1.4e-114 416.4 227 93.8
Nitab4.5_0001019g0090 Nicotiana tabacum HOM05D004655 ORTHO05D005567 2.6e-100 369.0 225 84.4
Peaxi162Scf00007g02516 Petunia axillaris HOM05D004655 ORTHO05D005567 5.8e-100 367.9 244 80.3
Nitab4.5_0000769g0070 Nicotiana tabacum HOM05D004655 ORTHO05D005567 5.4e-98 361.3 225 83.1
QL08p036998 Quercus lobata HOM05D004655 ORTHO05D005567 7.1e-98 360.9 227 80.2
Sp3g34160 Schrenkiella parvula HOM05D004655 ORTHO05D005567 7.8e-97 357.5 223 79.8
Duzib132G0466 Durio zibethinus HOM05D004655 ORTHO05D005567 2.5e-95 352.4 227 79.3
Carub.0003s3556 Capsella rubella HOM05D004655 ORTHO05D005567 3.3e-95 352.1 223 78.5
AL3G54160 Arabidopsis lyrata HOM05D004655 ORTHO05D005567 4.3e-95 351.7 223 79.4
Thhalv10002049m.g Eutrema salsugineum HOM05D004655 ORTHO05D005567 4.3e-95 351.7 220 79.5
Duzib132G0437 Durio zibethinus HOM05D004655 ORTHO05D005567 7.3e-95 350.9 227 78.9
Thecc.02G170400 Theobroma cacao HOM05D004655 ORTHO05D005567 7.3e-95 350.9 228 78.9
AT2G20890 Arabidopsis thaliana HOM05D004655 ORTHO05D005567 9.6e-95 350.5 222 78.8
Aa31LG8G17800 Aethionema arabicum HOM05D004655 ORTHO05D005567 2.1e-94 349.4 224 78.6
ATR0693G119 Amborella trichopoda HOM05D004655 ORTHO05D005567 3.6e-94 348.6 224 78.6
Gohir.D04G146200 Gossypium hirsutum HOM05D004655 ORTHO05D005567 3.6e-94 348.6 227 78.4
Gorai.012G132100 Gossypium raimondii HOM05D004655 ORTHO05D005567 3.6e-94 348.6 227 78.4
Nn1g03859 Nelumbo nucifera HOM05D004655 ORTHO05D005567 3.6e-94 348.6 226 73.9
CARHR111640 Cardamine hirsuta HOM05D004655 ORTHO05D005567 4.8e-94 348.2 223 78.0
PGR042G1100 Punica granatum HOM05D004655 ORTHO05D005567 4.8e-94 348.2 223 78.9
THA.LOC104804073 Tarenaya hassleriana HOM05D004655 ORTHO05D005567 6.2e-94 347.8 223 77.6
MSTRG.14176 Avicennia marina HOM05D004655 ORTHO05D005567 8.1e-94 347.4 227 78.0
Gohir.A04G106100 Gossypium hirsutum HOM05D004655 ORTHO05D005567 1.8e-93 346.3 227 78.0
MBI18_g27693_MAGBIO Magnolia biondii HOM05D004655 ORTHO05D005567 2.4e-93 345.9 226 77.0
BcaB08g34948 Brassica carinata HOM05D004655 ORTHO05D005567 3.1e-93 345.5 221 76.9
Lalb_Chr01g0005451 Lupinus albus HOM05D004655 ORTHO05D005567 3.1e-93 345.5 226 77.0
arahy.Tifrunner.gnm1.ann1.YR7HYJ Arachis hypogaea HOM05D004655 ORTHO05D005567 5.3e-93 344.7 220 81.4
BcaC07g41186 Brassica carinata HOM05D004655 ORTHO05D005567 5.3e-93 344.7 220 77.3
A09p58650 Brassica napus HOM05D004655 ORTHO05D005567 5.3e-93 344.7 220 77.3
C08p41940 Brassica napus HOM05D004655 ORTHO05D005567 5.3e-93 344.7 220 77.3
BolC8t51757H Brassica oleracea HOM05D004655 ORTHO05D005567 5.3e-93 344.7 220 77.3
BraA09t41251Z Brassica rapa HOM05D004655 ORTHO05D005567 5.3e-93 344.7 220 77.3
Cc05_g06070 Coffea canephora HOM05D004655 ORTHO05D005567 5.3e-93 344.7 226 77.9
Sed0025834 Sechium edule HOM05D004655 ORTHO05D005567 9.0e-93 344.0 221 77.8
arahy.Tifrunner.gnm1.ann1.XZ54ZU Arachis hypogaea HOM05D004655 ORTHO05D005567 1.5e-92 343.2 220 80.9
CiPaw.04G122300 Carya illinoinensis HOM05D004655 ORTHO05D005567 1.5e-92 343.2 226 75.7
CiPaw.03G168300 Carya illinoinensis HOM05D004655 ORTHO05D005567 2.6e-92 342.4 223 77.1
Eucgr.A01774 Eucalyptus grandis HOM05D004655 ORTHO05D005567 3.4e-92 342.0 227 76.7
arahy.Tifrunner.gnm1.ann1.81TW8H Arachis hypogaea HOM05D004655 ORTHO05D005567 4.4e-92 341.7 223 77.1
arahy.Tifrunner.gnm1.ann1.S2JPPU Arachis hypogaea HOM05D004655 ORTHO05D005567 5.8e-92 341.3 223 77.1
MELO3C018772.2 Cucumis melo HOM05D004655 ORTHO05D005567 5.8e-92 341.3 222 76.1
Medtr4g045980 Medicago truncatula HOM05D004655 ORTHO05D005567 5.8e-92 341.3 225 76.9
Phvul.005G108600 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 5.8e-92 341.3 221 76.9
TAR629G1482 Trochodendron aralioides HOM05D004655 ORTHO05D005567 7.6e-92 340.9 227 74.9
CSS0017466 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 9.9e-92 340.5 228 76.3
ClCG00G002920 Citrullus lanatus HOM05D004655 ORTHO05D005567 9.9e-92 340.5 222 76.1
ClCG02G001360 Citrullus lanatus HOM05D004655 ORTHO05D005567 9.9e-92 340.5 222 76.1
COL.COLO4_13659 Corchorus olitorius HOM05D004655 ORTHO05D005567 9.9e-92 340.5 227 75.8
TWI75G0473 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 9.9e-92 340.5 226 75.2
Ciclev10016098m.g Citrus clementina HOM05D004655 ORTHO05D005567 1.3e-91 340.1 225 76.0
GSVIVG01029990001 Vitis vinifera HOM05D004655 ORTHO05D005567 1.3e-91 340.1 226 74.3
CsaV3_7G004070 Cucumis sativus L. HOM05D004655 ORTHO05D005567 3.8e-91 338.6 222 75.7
Atru.chr6.3084 Acer truncatum HOM05D004655 ORTHO05D005567 4.9e-91 338.2 223 75.8
VMungo1080G0396 Vigna mungo HOM05D004655 ORTHO05D005567 4.9e-91 338.2 221 76.5
TWI36G0222 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 6.4e-91 337.8 226 74.3
CSS0020863 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 8.4e-91 337.4 224 75.4
RcHm_v2.0_Chr2g0161411 Rosa chinensis HOM05D004655 ORTHO05D005567 8.4e-91 337.4 226 74.8
TPR.G21652 Trifolium pratense HOM05D004655 ORTHO05D005567 8.4e-91 337.4 220 77.7
CSS0004933 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 1.1e-90 337.0 225 75.1
Migut.H01014 Erythranthe guttata HOM05D004655 ORTHO05D005567 1.1e-90 337.0 224 75.9
Actinidia12466 Actinidia chinensis HOM05D004655 ORTHO05D005567 1.4e-90 336.7 226 74.8
CANSAT64G1156 Cannabis sativa HOM05D004655 ORTHO05D005567 1.4e-90 336.7 224 74.6
Dinv13829 Davidia involucrata HOM05D004655 ORTHO05D005567 1.4e-90 336.7 222 77.5
Cfa014528 Carpinus fangiana HOM05D004655 ORTHO05D005567 2.4e-90 335.9 223 77.6
FAN02G3511 Fragaria x ananassa HOM05D004655 ORTHO05D005567 7.1e-90 334.3 226 73.9
FAN05G4368 Fragaria x ananassa HOM05D004655 ORTHO05D005567 7.1e-90 334.3 226 73.9
Manes.13G152400 Manihot esculenta HOM05D004655 ORTHO05D005567 7.1e-90 334.3 223 76.7
HPP92_012362 Vanilla planifolia HOM05D004655 ORTHO05D005567 7.1e-90 334.3 224 74.6
Ah.01g005210 Amaranthus hybridus HOM05D004655 ORTHO05D005567 1.2e-89 333.6 222 78.4
Lj3g0017119 Lotus japonicus HOM05D004655 ORTHO05D005567 1.2e-89 333.6 225 74.7
vmacro12257 Vaccinium macrocarpon HOM05D004655 ORTHO05D005567 1.2e-89 333.6 226 76.1
FvH4_6g44420 Fragaria vesca HOM05D004655 ORTHO05D005567 2.1e-89 332.8 226 73.5
FAN14G2207 Fragaria x ananassa HOM05D004655 ORTHO05D005567 2.1e-89 332.8 226 73.5
Glyma.12G200200 Glycine max HOM05D004655 ORTHO05D005567 2.7e-89 332.4 220 75.5
Lj3g0013026 Lotus japonicus HOM05D004655 ORTHO05D005567 2.7e-89 332.4 220 77.3
Glyma.13G302100 Glycine max HOM05D004655 ORTHO05D005567 4.6e-89 331.6 220 75.5
Psat7g149680 Pisum sativum HOM05D004655 ORTHO05D005567 4.6e-89 331.6 217 77.9
PSO675G0243 Papaver somniferum HOM05D004655 ORTHO05D005567 6.0e-89 331.3 226 72.6
Glyma.12G106600 Glycine max HOM05D004655 ORTHO05D005567 7.8e-89 330.9 217 77.4
MD09G1097200 Malus domestica HOM05D004655 ORTHO05D005567 7.8e-89 330.9 222 74.3
MD17G1085500 Malus domestica HOM05D004655 ORTHO05D005567 7.8e-89 330.9 228 71.9
Prupe.3G228700 Prunus persica HOM05D004655 ORTHO05D005567 7.8e-89 330.9 217 78.3
HanXRQChr06g0171121 Helianthus annuus HOM05D004655 ORTHO05D005567 1.0e-88 330.5 228 75.4
SGA_v2.0_scaffold34G13911 Striga asiatica HOM05D004655 ORTHO05D005567 1.0e-88 330.5 266 66.5
FAN02G1121 Fragaria x ananassa HOM05D004655 ORTHO05D005567 1.3e-88 330.1 226 72.6
unitig_21.g20001 Utricularia gibba HOM05D004655 ORTHO05D005567 1.3e-88 330.1 222 75.7
DCAR_012973 Daucus carota HOM05D004655 ORTHO05D005567 3.0e-88 328.9 225 74.2
Glyma.06G299100 Glycine max HOM05D004655 ORTHO05D005567 3.0e-88 328.9 217 77.4
TPR.G18073 Trifolium pratense HOM05D004655 ORTHO05D005567 3.0e-88 328.9 220 76.8
Potri.019G117900 Populus trichocarpa HOM05D004655 ORTHO05D005567 3.9e-88 328.6 228 72.8
SalBow7G2858 Salvia bowleyana HOM05D004655 ORTHO05D005567 3.9e-88 328.6 248 69.4
VMungo1127G2245 Vigna mungo HOM05D004655 ORTHO05D005567 3.9e-88 328.6 217 77.0
AUR62037119 Chenopodium quinoa HOM05D004655 ORTHO05D005567 5.1e-88 328.2 217 77.9
Ca_01544_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 5.1e-88 328.2 220 75.0
Actinidia18535 Actinidia chinensis HOM05D004655 ORTHO05D005567 6.6e-88 327.8 224 73.7
ECA246G4617 Erigeron canadensis HOM05D004655 ORTHO05D005567 8.7e-88 327.4 224 74.6
PSO541G1277 Papaver somniferum HOM05D004655 ORTHO05D005567 8.7e-88 327.4 222 73.0
Potri.013G148400 Populus trichocarpa HOM05D004655 ORTHO05D005567 1.1e-87 327.0 227 74.4
Lalb_Chr22g0356311 Lupinus albus HOM05D004655 ORTHO05D005567 1.9e-87 326.2 215 78.1
TAR627G0814 Trochodendron aralioides HOM05D004655 ORTHO05D005567 1.9e-87 326.2 221 75.6
AUR62032763 Chenopodium quinoa HOM05D004655 ORTHO05D005567 3.3e-87 325.5 217 77.4
Psat5g269080 Pisum sativum HOM05D004655 ORTHO05D005567 3.3e-87 325.5 220 74.5
EL10Ac9g20731 Beta vulgaris HOM05D004655 ORTHO05D005567 4.3e-87 325.1 217 78.3
DCAR_019200 Daucus carota HOM05D004655 ORTHO05D005567 4.3e-87 325.1 225 72.4
Os07g0558500 Oryza sativa ssp. japonica HOM05D004655 ORTHO05D005567 5.6e-87 324.7 217 77.4
Phvul.011G110700 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 9.6e-87 323.9 217 76.5
Aqoxy1G03905 Aquilegia oxysepala HOM05D004655 ORTHO05D005567 1.6e-86 323.2 224 73.2
SalBow1G2826 Salvia bowleyana HOM05D004655 ORTHO05D005567 3.6e-86 322.0 219 74.9
Lsat_1_v5_gn_3_40720 Lactuca sativa HOM05D004655 ORTHO05D005567 6.2e-86 321.2 231 71.4
Zm00001eb324100 Zea mays HOM05D004655 ORTHO05D005567 1.1e-85 320.5 221 75.1
Rhsim06G0153100 Rhododendron simsii HOM05D004655 ORTHO05D005567 1.8e-85 319.7 253 66.4
Lj1C737G5 Lonicera japonica HOM05D004655 ORTHO05D005567 5.3e-85 318.2 254 66.5
Hma1.2p1_0565F.1_g179650 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 2.0e-84 316.2 228 72.8
Ca_20707_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 9.9e-84 313.9 228 69.3
SGA_v2.0_scaffold70G23458 Striga asiatica HOM05D004655 ORTHO05D005567 9.9e-84 313.9 197 80.2
Haze_13070 Corylus avellana HOM05D004655 ORTHO05D005567 2.2e-83 312.8 284 60.9
Hma1.2p1_0662F.1_g198360 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 2.9e-83 312.4 219 74.0
Duzib052G1220 Durio zibethinus HOM05D004655 ORTHO05D005567 1.1e-82 310.5 205 77.6
Medtr2g089795 Medicago truncatula HOM05D004655 ORTHO05D005567 4.2e-82 308.5 216 72.7
Sc12g0002690 Simmondsia chinensis HOM05D004655 ORTHO05D005567 7.1e-82 307.8 214 74.3
Nn1g06795 Nelumbo nucifera HOM05D004655 ORTHO05D005567 2.1e-81 306.2 202 75.2
Nn1g06798 Nelumbo nucifera HOM05D004655 ORTHO05D005567 2.1e-81 306.2 202 75.2
Duzib248G0290 Durio zibethinus HOM05D004655 ORTHO05D005567 1.3e-80 303.5 204 76.0
Sabra19G0118300 Salix brachista HOM05D004655 ORTHO05D005567 1.3e-80 303.5 276 59.8
Sabra19G0135300 Salix brachista HOM05D004655 ORTHO05D005567 2.5e-79 299.3 272 59.9
Lj8C118T0 Lonicera japonica HOM05D004655 ORTHO05D005567 1.3e-78 297.0 225 70.7
Sabra13G0119700 Salix brachista HOM05D004655 ORTHO05D005567 3.8e-75 285.4 227 67.4
Pp3c19_17570 Physcomitrium patens HOM05D004655 ORTHO05D005567 6.0e-73 278.1 213 62.9
Pp3c21_14540 Physcomitrium patens HOM05D004655 ORTHO05D005567 2.3e-72 276.2 211 64.5
Zm00001eb106830 Zea mays HOM05D004655 ORTHO05D005567 3.0e-72 275.8 193 74.6
Mapoly0010s0156 Marchantia polymorpha HOM05D004655 ORTHO05D005567 3.9e-72 275.4 211 67.8
SMO266G0053 Selaginella moellendorffii HOM05D004655 ORTHO05D005567 4.1e-69 265.4 195 67.2
AagrBONN_evm.TU.Sc2ySwM_344.251 Anthoceros agrestis HOM05D004655 ORTHO05D005567 9.0e-69 264.2 195 65.6
FAN09G1462 Fragaria x ananassa HOM05D004655 ORTHO05D005567 1.4e-66 256.9 226 61.5
Ah.01g014420 Amaranthus hybridus HOM05D004655 ORTHO05D005567 5.3e-61 238.4 159 77.4
AUR62037125 Chenopodium quinoa HOM05D001718 ORTHO05D008006 2.5e-58 229.6 191 62.8
Sc12g0003940 Simmondsia chinensis HOM05D004655 ORTHO05D005567 7.2e-58 228.0 160 70.6
AUR62032764 Chenopodium quinoa HOM05D001718 ORTHO05D008006 4.6e-57 225.3 191 61.8
PRCOL_00003577 Prasinoderma coloniale HOM05D004655 ORTHO05D005567 1.2e-52 210.7 207 50.7
CBR_g78876 Chara braunii HOM05D004655 ORTHO05D005567 2.2e-51 206.5 223 50.7
Cpa.g.sc34.80 Carica papaya HOM05D004655 ORTHO05D005567 2.8e-46 189.5 125 71.2
Cre13.g562850 Chlamydomonas reinhardtii HOM05D004655 ORTHO05D005567 2.2e-43 179.9 208 47.1
Dinv15502 Davidia involucrata HOM05D004655 ORTHO05D005567 5.0e-43 178.7 115 74.8
CDE05G0437 Ceratophyllum demersum HOM05D004655 ORTHO05D005567 9.4e-42 174.5 144 62.5
CDE05G0433 Ceratophyllum demersum HOM05D004655 ORTHO05D005567 3.1e-37 159.5 109 72.5
MCO07G428 Micromonas commoda HOM05D004655 ORTHO05D005567 8.5e-35 151.4 207 42.0
SEGI_32441 Sequoiadendron giganteum HOM05D004655 ORTHO05D005567 3.1e-29 132.9 79 74.7
Cpa.g.sc34.79 Carica papaya HOM05D004655 ORTHO05D005567 3.7e-22 109.4 70 78.6
VMungo0720G1089 Vigna mungo HOM05D004655 ORTHO05D005567 5.4e-21 105.5 59 88.1
ClCG02G001370 Citrullus lanatus HOM05D004655 ORTHO05D005567 1.0e-19 101.3 64 82.8
Sabra19G0118700 Salix brachista HOM05D004655 ORTHO05D005567 3.7e-14 82.8 121 45.5
Oeu029438.1 Olea europaea HOM05D004655 ORTHO05D005567 3.5e-12 76.3 69 56.5
Hma1.2p1_0479F.1_g161430 Hydrangea macrophylla HOM05D001315 ORTHO05D001618 5.6e-10 68.9 71 56.3
Sed0002097 Sechium edule HOM05D004655 ORTHO05D005567 5.6e-10 68.9 80 46.2
Oeu037167.1 Olea europaea HOM05D004655 ORTHO05D005567 6.4e-06 55.5 28 85.7


User provided reference genes

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