Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G505.24 Capsicum annuum HOM05D005324 ORTHO05D001185 1.9e-49 198.7 94 100.0
Cc00_g34090 Coffea canephora HOM05D005324 ORTHO05D001185 4.8e-24 114.4 93 54.8
Cc00_g17730 Coffea canephora HOM05D003326 ORTHO05D001185 3.1e-23 111.7 90 56.7
HanXRQChr09g0262551 Helianthus annuus HOM05D003376 ORTHO05D001185 1.5e-22 109.4 90 56.7
PGSC0003DMG400042319 Solanum tuberosum HOM05D019581 ORTHO05D018017 1.3e-21 106.3 79 62.0
arahy.Tifrunner.gnm1.ann1.BZ6XIA Arachis hypogaea HOM05D003326 ORTHO05D000002 5.5e-20 100.9 93 52.7
ECA248G1715 Erigeron canadensis HOM05D005324 ORTHO05D001185 7.1e-20 100.5 94 53.2
CANSAT80G1954 Cannabis sativa HOM05D005324 ORTHO05D001185 2.7e-19 98.6 93 50.5
Thhalv10012231m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 2.3e-18 95.5 93 50.5
Thhalv10023188m.g Eutrema salsugineum HOM05D003376 ORTHO05D000002 5.1e-18 94.4 93 49.5
Thhalv10028029m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 5.1e-18 94.4 93 49.5
Atru.chr3.3306 Acer truncatum HOM05D000477 ORTHO05D001185 1.5e-17 92.8 86 52.3
Atru.chr7.181 Acer truncatum HOM05D005324 ORTHO05D001185 1.9e-17 92.4 93 50.5
Thhalv10001272m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 2.5e-17 92.0 93 48.4
Atru.chr4.310 Acer truncatum HOM05D005324 ORTHO05D001185 3.3e-17 91.7 93 50.5
Atru.chr10.1416 Acer truncatum HOM05D005324 ORTHO05D001185 4.3e-17 91.3 93 48.4
AL88U10020 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 4.3e-17 91.3 93 45.2
AL8G17310 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 4.3e-17 91.3 93 45.2
AL8G17360 Arabidopsis lyrata HOM05D003376 ORTHO05D011035 4.3e-17 91.3 93 45.2
Atru.chr1.2372 Acer truncatum HOM05D005324 ORTHO05D001185 5.7e-17 90.9 94 51.1
Thhalv10028344m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 5.7e-17 90.9 92 47.8
Ca_22741_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 9.7e-17 90.1 93 45.2
AL1G57140 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 1.3e-16 89.7 93 44.1
Ca_23895_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.6e-16 89.4 69 52.2
Lj4g0014350 Lotus japonicus HOM05D005324 ORTHO05D001185 1.6e-16 89.4 93 45.2
Lj6g0006708 Lotus japonicus HOM05D005324 ORTHO05D001185 1.6e-16 89.4 93 45.2
AL8G17320 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 2.2e-16 89.0 93 44.1
AL6G42760 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 3.7e-16 88.2 93 44.1
Ca_14763_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 3.7e-16 88.2 93 43.0
Lj2g0007658 Lotus japonicus HOM05D005324 ORTHO05D001185 4.8e-16 87.8 93 44.1
Atru.chr13.2110 Acer truncatum HOM05D005324 ORTHO05D001185 6.3e-16 87.4 93 47.3
Ca_14156_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 6.3e-16 87.4 69 52.2
Thhalv10000705m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 6.3e-16 87.4 83 48.2
AL6G41750 Arabidopsis lyrata HOM05D003376 ORTHO05D000002 1.1e-15 86.7 93 43.0
Thhalv10003417m.g Eutrema salsugineum HOM05D003376 ORTHO05D000048 1.4e-15 86.3 82 47.6
Thecc.01G138000 Theobroma cacao HOM05D005324 ORTHO05D001185 1.4e-15 86.3 79 51.9
Thhalv10028343m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 1.8e-15 85.9 83 47.0
Ca_22549_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.4e-15 85.5 93 41.9
Lj6g0011364 Lotus japonicus HOM05D005324 ORTHO05D001185 4.1e-15 84.7 93 43.0
Ca_24087_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 5.3e-15 84.3 93 41.9
Thhalv10002934m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 9.0e-15 83.6 83 45.8
Ca_24116_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.2e-14 83.2 93 40.9
Atru.chr11.226 Acer truncatum HOM05D005324 ORTHO05D001185 3.4e-14 81.6 69 53.6
Atru.chr5.1824 Acer truncatum HOM05D005324 ORTHO05D001185 5.0e-13 77.8 59 59.3
Ca_05166_v3 Cicer arietinum L. HOM05D005324 ORTHO05D000002 5.0e-13 77.8 66 50.0
Ca_25326_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.5e-12 75.5 90 40.0
Lj6g0018849 Lotus japonicus HOM05D005324 ORTHO05D001185 5.5e-12 74.3 65 47.7
BcaB05g22490 Brassica carinata HOM05D003376 ORTHO05D001185 4.6e-11 71.2 87 43.7
Atru.chr1.2076 Acer truncatum HOM05D005324 ORTHO05D001185 6.1e-11 70.9 77 49.4
COL.COLO4_29280 Corchorus olitorius HOM05D003376 ORTHO05D001185 1.0e-10 70.1 68 50.0
A01p13220 Brassica napus HOM05D003376 ORTHO05D001185 1.8e-10 69.3 76 42.1
A01p13240 Brassica napus HOM05D003376 ORTHO05D001185 1.8e-10 69.3 76 42.1
Ca_19239_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 3.9e-10 68.2 56 50.0
Ca_19341_v3 Cicer arietinum L. HOM05D005324 ORTHO05D000048 3.3e-09 65.1 54 50.0
Ca_30800_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 3.3e-09 65.1 54 50.0
BraA09t38519Z Brassica rapa HOM05D003376 ORTHO05D001185 9.7e-09 63.5 59 49.2
Ca_03092_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 4.8e-08 61.2 70 41.4
Ca_13672_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 4.8e-08 61.2 78 42.3
Ca_30430_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 4.8e-08 61.2 78 42.3
Atru.chr1.2263 Acer truncatum HOM05D005324 ORTHO05D001185 6.3e-08 60.8 45 62.2
Ca_05875_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 6.3e-08 60.8 70 40.0
Atru.chr5.1763 Acer truncatum HOM05D005324 ORTHO05D001185 8.2e-08 60.5 70 44.3
BraA05t20180Z Brassica rapa HOM05D003376 ORTHO05D001185 8.2e-08 60.5 59 47.5
Atru.chr9.330 Acer truncatum HOM05D005324 ORTHO05D001185 1.8e-07 59.3 45 60.0
Ca_14762_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.8e-07 59.3 70 38.6
Ca_22528_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.4e-07 58.9 46 52.2
Ca_11659_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 3.1e-07 58.5 70 38.6
Cc00_g18200 Coffea canephora HOM05D013520 ORTHO05D011089 3.1e-07 58.5 41 63.4
Thhalv10027218m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 4.1e-07 58.2 56 50.0
C01p15920 Brassica napus HOM05D003376 ORTHO05D001185 5.3e-07 57.8 59 45.8
BraA01t01266Z Brassica rapa HOM05D003376 ORTHO05D001185 5.3e-07 57.8 59 45.8
Ca_30934_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 5.3e-07 57.8 67 41.8
Cc00_g07770 Coffea canephora HOM05D005324 ORTHO05D011089 5.3e-07 57.8 41 63.4
Cc00_g24840 Coffea canephora HOM05D003376 ORTHO05D011089 6.9e-07 57.4 38 65.8
QL07p038177 Quercus lobata HOM05D003376 ORTHO05D000002 6.9e-07 57.4 41 63.4
Ca_23845_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 9.1e-07 57.0 43 51.2
BolC1t01546H Brassica oleracea HOM05D003376 ORTHO05D001185 3.4e-06 55.1 59 44.1
Lj3g0022640 Lotus japonicus HOM05D005324 ORTHO05D001185 3.4e-06 55.1 78 35.9
Ca_14332_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 4.5e-06 54.7 70 37.1


User provided reference genes

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