Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G504.43 Capsicum annuum HOM05D004672 ORTHO05D005732 0.0e+00 2396.7 1268 100.0
Sopen01g048630 Solanum pennellii HOM05D004672 ORTHO05D005732 0.0e+00 2033.5 1275 86.1
Solyc01g106220.4 Solanum lycopersicum HOM05D004672 ORTHO05D005732 0.0e+00 2021.9 1275 85.4
PGSC0003DMG400010676 Solanum tuberosum HOM05D004672 ORTHO05D005732 0.0e+00 1944.5 1260 83.2
Nitab4.5_0002335g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1862.0 1257 80.4
Nitab4.5_0005163g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1841.2 1284 78.1
Peaxi162Scf00016g03462 Petunia axillaris HOM05D004672 ORTHO05D005732 0.0e+00 1578.5 1281 68.6
MSTRG.16633 Avicennia marina HOM05D004672 ORTHO05D005732 0.0e+00 1572.4 1253 67.1
Peaxi162Scf00016g03257 Petunia axillaris HOM05D004672 ORTHO05D005732 0.0e+00 1570.8 1270 69.2
CSS0000676 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 0.0e+00 1570.4 1244 67.7
Actinidia02411 Actinidia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1544.3 1242 66.4
Lj9C342T12 Lonicera japonica HOM05D004672 ORTHO05D005732 0.0e+00 1541.2 1272 65.1
CSS0013617 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 0.0e+00 1540.4 1278 65.3
Nitab4.5_0005163g0030 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1525.8 1265 68.4
vmacro19391 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 0.0e+00 1513.4 1232 65.6
Ciclev10027696m.g Citrus clementina HOM05D004672 ORTHO05D005732 0.0e+00 1498.4 1241 64.0
Cc02_g20590 Coffea canephora HOM05D004672 ORTHO05D005732 0.0e+00 1483.4 1287 62.5
Hma1.2p1_0908F.1_g235670 Hydrangea macrophylla HOM05D004672 ORTHO05D005732 0.0e+00 1482.2 1303 64.0
Manes.10G094200 Manihot esculenta HOM05D004672 ORTHO05D005732 0.0e+00 1478.4 1277 63.1
Duzib132G0551 Durio zibethinus HOM05D004672 ORTHO05D005732 0.0e+00 1475.3 1254 63.0
Gohir.D13G048000 Gossypium hirsutum HOM05D004672 ORTHO05D005732 0.0e+00 1474.9 1273 62.4
CiPaw.06G160900 Carya illinoinensis HOM05D004672 ORTHO05D005732 0.0e+00 1472.6 1317 61.0
Thecc.02G125000 Theobroma cacao HOM05D004672 ORTHO05D005732 0.0e+00 1470.3 1272 61.3
Gorai.013G053600 Gossypium raimondii HOM05D004672 ORTHO05D005732 0.0e+00 1466.1 1273 62.2
Potri.009G079900 Populus trichocarpa HOM05D004672 ORTHO05D005732 0.0e+00 1459.9 1293 62.3
DCAR_021895 Daucus carota HOM05D004672 ORTHO05D005732 0.0e+00 1453.3 1273 62.5
Sed0014665 Sechium edule HOM05D004672 ORTHO05D005732 0.0e+00 1450.6 1271 60.7
Cfa004803 Carpinus fangiana HOM05D004672 ORTHO05D005732 0.0e+00 1447.6 1297 61.3
QL11p026607 Quercus lobata HOM05D004672 ORTHO05D005732 0.0e+00 1446.4 1330 61.1
MD10G1056900 Malus domestica HOM05D004672 ORTHO05D005732 0.0e+00 1445.3 1242 61.4
Glyma.13G254600 Glycine max HOM05D004672 ORTHO05D005732 0.0e+00 1444.5 1243 63.1
FvH4_2g11160 Fragaria vesca HOM05D004672 ORTHO05D005732 0.0e+00 1439.5 1212 63.7
RcHm_v2.0_Chr6g0269481 Rosa chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1439.1 1197 64.2
Migut.B00522 Erythranthe guttata HOM05D004672 ORTHO05D005732 0.0e+00 1436.8 1305 61.1
Gohir.A13G049500 Gossypium hirsutum HOM05D004672 ORTHO05D005732 0.0e+00 1434.5 1247 62.2
Sed0001753 Sechium edule HOM05D004672 ORTHO05D005732 0.0e+00 1429.8 1279 59.8
ClCG09G016480 Citrullus lanatus HOM05D004672 ORTHO05D005732 0.0e+00 1429.5 1254 60.8
Phvul.006G199700 Phaseolus vulgaris HOM05D004672 ORTHO05D005732 0.0e+00 1427.9 1272 61.2
Glyma.15G060100 Glycine max HOM05D004672 ORTHO05D005732 0.0e+00 1425.2 1208 64.0
MD05G1049800 Malus domestica HOM05D004672 ORTHO05D005732 0.0e+00 1425.2 1225 61.7
Prupe.8G075100 Prunus persica HOM05D004672 ORTHO05D005732 0.0e+00 1424.8 1281 60.3
SalBow6G5524 Salvia bowleyana HOM05D004672 ORTHO05D005732 0.0e+00 1424.1 1281 61.1
SGA_v2.0_scaffold83G26394 Striga asiatica HOM05D004672 ORTHO05D005732 0.0e+00 1424.1 1196 64.0
GSVIVG01038520001 Vitis vinifera HOM05D004672 ORTHO05D005732 0.0e+00 1423.7 1245 63.1
Sabra09G0061900 Salix brachista HOM05D004672 ORTHO05D005732 0.0e+00 1419.8 1268 61.4
TAR628G0793 Trochodendron aralioides HOM05D004672 ORTHO05D005732 0.0e+00 1419.4 1273 60.1
Hund06479 Selenicereus undatus HOM05D004672 ORTHO05D005732 0.0e+00 1416.7 1247 60.5
Lalb_Chr18g0060301 Lupinus albus HOM05D004672 ORTHO05D005732 0.0e+00 1412.5 1261 60.7
TWI59G0488 Tripterygium wilfordii HOM05D004672 ORTHO05D005732 0.0e+00 1409.8 1197 61.6
Oeu042393.4 Olea europaea HOM05D004672 ORTHO05D005732 0.0e+00 1409.4 1276 61.0
Potri.001G285600 Populus trichocarpa HOM05D004672 ORTHO05D005732 0.0e+00 1409.4 1246 61.5
CsaV3_7G007430 Cucumis sativus L. HOM05D004672 ORTHO05D005732 0.0e+00 1408.3 1283 59.7
Psat1g212840 Pisum sativum HOM05D004672 ORTHO05D005732 0.0e+00 1407.9 1263 60.3
FAN24G1132 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1399.8 1212 62.4
Ca_00181_v3 Cicer arietinum L. HOM05D004672 ORTHO05D005732 0.0e+00 1395.2 1216 61.5
MELO3C018559.2 Cucumis melo HOM05D004672 ORTHO05D005732 0.0e+00 1393.6 1284 59.3
Nn1g07286 Nelumbo nucifera HOM05D004672 ORTHO05D005732 0.0e+00 1392.9 1265 59.8
Eucgr.I02582 Eucalyptus grandis HOM05D004672 ORTHO05D005732 0.0e+00 1392.5 1267 60.1
Oeu033795.2 Olea europaea HOM05D004672 ORTHO05D005732 0.0e+00 1392.5 1309 59.3
FAN20G2876 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1391.7 1208 62.5
VMungo0540G1852 Vigna mungo HOM05D004672 ORTHO05D005732 0.0e+00 1390.6 1279 60.7
Medtr2g010110 Medicago truncatula HOM05D004672 ORTHO05D005732 0.0e+00 1388.6 1280 60.0
FAN27G2619 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1387.5 1207 62.5
HanXRQChr03g0071051 Helianthus annuus HOM05D004672 ORTHO05D005732 0.0e+00 1385.2 1260 60.5
FAN15G2368 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1382.5 1252 60.7
Sabra16G0178000 Salix brachista HOM05D004672 ORTHO05D005732 0.0e+00 1377.5 1295 58.9
CANSAT54G0310 Cannabis sativa HOM05D004672 ORTHO05D005732 0.0e+00 1376.3 1230 60.2
arahy.Tifrunner.gnm1.ann1.BVLY6P Arachis hypogaea HOM05D004672 ORTHO05D005732 0.0e+00 1372.5 1282 59.2
EL10Ac9g22127 Beta vulgaris HOM05D004672 ORTHO05D005732 0.0e+00 1369.8 1275 58.3
Lsat_1_v5_gn_9_113661 Lactuca sativa HOM05D004672 ORTHO05D005732 0.0e+00 1369.8 1246 60.8
Lsat_1_v5_gn_9_113760 Lactuca sativa HOM05D004672 ORTHO05D005732 0.0e+00 1369.8 1246 60.8
Haze_10395 Corylus avellana HOM05D004672 ORTHO05D005732 0.0e+00 1369.0 1349 56.9
Aqoxy6G00637 Aquilegia oxysepala HOM05D004672 ORTHO05D005732 0.0e+00 1361.7 1280 58.2
ECA240G2418 Erigeron canadensis HOM05D004672 ORTHO05D005732 0.0e+00 1361.7 1238 60.0
Lj6g0005540 Lotus japonicus HOM05D004672 ORTHO05D005732 0.0e+00 1351.7 1291 59.6
arahy.Tifrunner.gnm1.ann1.GE1IDC Arachis hypogaea HOM05D004672 ORTHO05D005732 0.0e+00 1350.1 1263 59.2
AUR62027080 Chenopodium quinoa HOM05D004672 ORTHO05D005732 0.0e+00 1337.0 1274 56.9
AUR62030919 Chenopodium quinoa HOM05D004672 ORTHO05D005732 0.0e+00 1320.8 1271 56.6
PGR142G1680 Punica granatum HOM05D004672 ORTHO05D005732 0.0e+00 1320.4 1199 60.5
MBI16_g10454_MAGBIO Magnolia biondii HOM05D004672 ORTHO05D005732 0.0e+00 1303.5 1280 56.5
THA.LOC104799703 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 0.0e+00 1303.5 1187 58.1
Carub.0008s2522 Capsella rubella HOM05D004672 ORTHO05D005732 0.0e+00 1280.4 1304 54.7
Sp2g27510 Schrenkiella parvula HOM05D004672 ORTHO05D005732 0.0e+00 1277.7 1212 57.5
CARHR278390 Cardamine hirsuta HOM05D004672 ORTHO05D005732 0.0e+00 1261.1 1212 56.9
Thhalv10003522m.g Eutrema salsugineum HOM05D004672 ORTHO05D005732 0.0e+00 1255.4 1209 56.3
Aa31LG1G17480 Aethionema arabicum HOM05D004672 ORTHO05D005732 0.0e+00 1250.7 1284 54.0
C03p61860 Brassica napus HOM05D004672 ORTHO05D005732 0.0e+00 1242.3 1207 56.8
BolC3t18446H Brassica oleracea HOM05D004672 ORTHO05D005732 0.0e+00 1242.3 1207 56.8
BraA06t26051Z Brassica rapa HOM05D004672 ORTHO05D005732 0.0e+00 1237.6 1212 56.1
A06p31080 Brassica napus HOM05D004672 ORTHO05D005732 0.0e+00 1237.2 1211 56.2
AL8G41790 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 0.0e+00 1236.1 1218 55.5
THA.LOC104818461 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 0.0e+00 1235.7 1296 52.6
AT5G64420 Arabidopsis thaliana HOM05D004672 ORTHO05D005732 0.0e+00 1234.9 1305 53.5
Sc06g0005830 Simmondsia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1211.4 1091 59.6
PSO478G3191 Papaver somniferum HOM05D004672 ORTHO05D005732 0.0e+00 1206.4 1263 52.5
TPR.G32637 Trifolium pratense HOM05D004672 ORTHO05D005732 0.0e+00 1198.7 1314 53.2
PSO017G1610 Papaver somniferum HOM05D004672 ORTHO05D005732 0.0e+00 1188.7 1184 54.7
Duzib132G1253 Durio zibethinus HOM05D004672 ORTHO05D005732 0.0e+00 1175.6 1242 53.9
unitig_744.g24197 Utricularia gibba HOM05D004672 ORTHO05D005732 0.0e+00 1172.5 1257 54.2
Actinidia00323 Actinidia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1106.7 963 64.1
CDE05G2025 Ceratophyllum demersum HOM05D004672 ORTHO05D005732 6.1e-311 1071.2 1247 48.7
SHI04921 Sapria himalayana HOM05D004672 ORTHO05D005732 6.1e-308 1061.2 1239 49.2
HPP92_024099 Vanilla planifolia HOM05D004672 ORTHO05D005732 1.0e-307 1060.4 1292 46.6
Ah.01g024170 Amaranthus hybridus HOM05D004672 ORTHO05D005732 9.8e-306 1053.9 1117 53.5
ATR0800G038 Amborella trichopoda HOM05D004672 ORTHO05D005732 4.9e-297 1025.0 1274 46.6
Dinv08968 Davidia involucrata HOM05D004672 ORTHO05D005732 1.3e-289 1000.3 752 69.3
Zm00001eb231630 Zea mays HOM05D004672 ORTHO05D005732 1.7e-281 973.4 1240 46.5
Os02g0135700 Oryza sativa ssp. japonica HOM05D004672 ORTHO05D005732 5.6e-277 958.4 1263 45.0
Atru.chr6.1353 Acer truncatum HOM05D004672 ORTHO05D005732 1.2e-239 834.3 663 66.2
Cpa.g.sc20.40 Carica papaya HOM05D004672 ORTHO05D005732 2.7e-223 780.0 1303 40.5
SEGI_31749 Sequoiadendron giganteum HOM05D004672 ORTHO05D005732 5.9e-218 762.3 1117 41.6
Dinv16031 Davidia involucrata HOM05D004672 ORTHO05D005732 5.6e-176 622.9 429 72.3
vmacro06228 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 2.1e-167 594.3 816 47.5
Atru.chr6.1354 Acer truncatum HOM05D004672 ORTHO05D005732 8.7e-161 572.4 555 59.1
BcaB07g29742 Brassica carinata HOM05D004672 ORTHO05D005732 2.1e-151 541.2 692 50.1
Dinv08967 Davidia involucrata HOM05D004672 ORTHO05D005732 5.3e-150 536.6 472 64.2
Pp3c3_9940 Physcomitrium patens HOM05D004672 ORTHO05D005732 2.0e-149 534.6 1251 33.1
Dinv16032 Davidia involucrata HOM05D004672 ORTHO05D005732 2.4e-147 527.7 461 63.8
AagrBONN_evm.TU.Sc2ySwM_228.3115__3116 Anthoceros agrestis HOM05D004672 ORTHO05D005732 1.5e-144 518.5 1233 31.6
AagrBONN_evm.TU.Sc2ySwM_368.3324__3325 Anthoceros agrestis HOM05D004672 ORTHO05D005732 8.1e-143 512.7 1252 31.7
Pp3c13_11570 Physcomitrium patens HOM05D004672 ORTHO05D005732 1.2e-141 508.8 1235 32.5
Mapoly0136s0021 Marchantia polymorpha HOM05D004672 ORTHO05D005732 3.4e-133 480.7 1216 31.2
BcaC03g18261 Brassica carinata HOM05D004672 ORTHO05D005732 4.1e-126 457.2 608 44.1
SMO358G0564 Selaginella moellendorffii HOM05D004672 ORTHO05D005732 3.2e-123 447.6 1153 30.4
C02p63340 Brassica napus HOM05D004672 ORTHO05D005732 1.4e-97 362.5 1068 30.7
CBR_g52045 Chara braunii HOM05D004672 ORTHO05D005732 6.3e-95 353.6 1308 27.4
BolC2t12404H Brassica oleracea HOM05D004672 ORTHO05D005732 3.6e-90 337.8 1064 29.1
AL8G35270 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 9.2e-70 270.0 251 57.4
Gorai.005G227500 Gossypium raimondii HOM05D004672 ORTHO05D005732 3.0e-68 265.0 502 35.7
Gohir.D02G202550 Gossypium hirsutum HOM05D004672 ORTHO05D005732 9.5e-67 260.0 502 35.3
BcaC03g18262 Brassica carinata HOM05D004672 ORTHO05D005732 3.6e-66 258.1 353 45.3
Nitab4.5_0001405g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 1.7e-60 239.2 217 62.7
Nitab4.5_0003026g0050 Nicotiana tabacum HOM05D004672 ORTHO05D005732 3.2e-46 191.8 354 37.3
Nitab4.5_0001405g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 9.3e-38 163.7 128 68.8
MCO10G087 Micromonas commoda HOM05D004672 ORTHO05D005732 1.6e-29 136.3 1268 21.9
Nitab4.5_0001405g0040 Nicotiana tabacum HOM05D004672 ORTHO05D005732 1.5e-27 129.8 121 60.3
Psat5g050320 Pisum sativum HOM05D004672 ORTHO05D005732 9.6e-27 127.1 92 66.3
Manes.10G093300 Manihot esculenta HOM05D004672 ORTHO05D005732 1.6e-26 126.3 140 56.4
Solyc01g106270.1 Solanum lycopersicum HOM05D004672 ORTHO05D005732 1.1e-25 123.6 191 45.0
Cre01.g012350 Chlamydomonas reinhardtii HOM05D004672 ORTHO05D005732 2.2e-23 115.9 1266 21.5
C02p63360 Brassica napus HOM05D004672 ORTHO05D005732 3.2e-22 112.1 145 42.1
RcHm_v2.0_Chr1g0357401 Rosa chinensis HOM05D004672 ORTHO05D346782 5.7e-19 101.3 184 37.5
Nn2g13574 Nelumbo nucifera HOM05D004672 ORTHO05D005732 7.6e-16 90.9 61 70.5
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 1.3e-15 90.1 68 64.7
Medtr2g086320 Medicago truncatula HOM05D004672 ORTHO05D005732 2.9e-15 89.0 112 50.0
Lsat_1_v5_gn_8_42860 Lactuca sativa HOM05D004672 ORTHO05D005732 2.5e-14 85.9 73 57.5
Nn8g41203 Nelumbo nucifera HOM05D004672 ORTHO05D005732 4.2e-14 85.1 71 53.5
Psat0s7528g0040 Pisum sativum HOM05D003881 ORTHO05D004343 5.5e-14 84.7 53 73.6
Psat1g034120 Pisum sativum HOM05D003881 ORTHO05D004343 5.5e-14 84.7 53 73.6
Zm00001eb156660 Zea mays HOM05D004672 ORTHO05D005732 2.3e-12 79.3 84 46.4
C02p63350 Brassica napus HOM05D004672 ORTHO05D005732 9.0e-09 67.4 71 49.3
arahy.Tifrunner.gnm1.ann1.F8N9WK Arachis hypogaea HOM05D000158 ORTHO05D000197 2.6e-08 65.9 92 46.7
BraA02t09256Z Brassica rapa HOM05D004672 ORTHO05D005732 4.5e-08 65.1 71 49.3
unitig_21.g20701 Utricularia gibba HOM05D004672 ORTHO05D005732 6.5e-07 61.2 50 56.0
Zm00001eb132650 Zea mays HOM05D004672 ORTHO05D005732 1.1e-06 60.5 50 56.0
SGA_v2.0_scaffold32G12947 Striga asiatica HOM05D004672 ORTHO05D005732 1.4e-06 60.1 70 51.4
Ah.01g011940 Amaranthus hybridus HOM05D004672 ORTHO05D005732 1.9e-06 59.7 40 67.5
Cfa025397 Carpinus fangiana HOM05D004672 ORTHO05D126383 1.9e-06 59.7 228 27.6


User provided reference genes

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