Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G500.97 Capsicum annuum HOM05D005047 ORTHO05D006540 3.2e-89 331.6 158 100.0
PGSC0003DMG400029615 Solanum tuberosum HOM05D005047 ORTHO05D006540 2.1e-85 318.9 158 96.8
Nitab4.5_0010267g0010 Nicotiana tabacum HOM05D005047 ORTHO05D006540 1.1e-84 316.6 160 93.8
Sopen09g034350 Solanum pennellii HOM05D005047 ORTHO05D006540 3.1e-84 315.1 160 94.4
Solyc09g091420.4 Solanum lycopersicum HOM05D005047 ORTHO05D006540 9.0e-84 313.5 160 94.4
Cc03_g07220 Coffea canephora HOM05D005047 ORTHO05D006540 1.1e-78 296.6 158 88.0
Sc13g0002770 Simmondsia chinensis HOM05D005047 ORTHO05D006540 1.4e-76 289.7 158 86.7
PSO782G5131 Papaver somniferum HOM05D005047 ORTHO05D006540 9.0e-76 287.0 160 83.1
PSO478G4795 Papaver somniferum HOM05D005047 ORTHO05D006540 2.0e-75 285.8 160 83.1
Cpa.g.sc59.91 Carica papaya HOM05D005047 ORTHO05D006540 7.7e-75 283.9 160 83.8
Ciclev10005905m.g Citrus clementina HOM05D005047 ORTHO05D006540 2.9e-74 282.0 160 83.8
CiPaw.01G126600 Carya illinoinensis HOM05D005047 ORTHO05D006540 3.8e-74 281.6 157 82.8
PGR142G1511 Punica granatum HOM05D005047 ORTHO05D006540 5.0e-74 281.2 156 84.0
Dinv38281 Davidia involucrata HOM05D005047 ORTHO05D006540 6.5e-74 280.8 154 85.7
GSVIVG01029046001 Vitis vinifera HOM05D005047 ORTHO05D006540 6.5e-74 280.8 158 84.2
CSS0002501 Camellia sinensis var. sinensis HOM05D005047 ORTHO05D006540 8.5e-74 280.4 156 82.7
Gorai.006G219600 Gossypium raimondii HOM05D005047 ORTHO05D006540 1.1e-73 280.0 157 82.8
Haze_11554 Corylus avellana HOM05D005047 ORTHO05D006540 1.9e-73 279.3 160 83.1
Thecc.04G211900 Theobroma cacao HOM05D005047 ORTHO05D006540 2.5e-73 278.9 157 83.4
TPR.G10100 Trifolium pratense HOM05D005047 ORTHO05D006540 2.5e-73 278.9 154 84.4
CANSAT78G0753 Cannabis sativa HOM05D005047 ORTHO05D006540 3.2e-73 278.5 158 82.3
CANSAT78G2209 Cannabis sativa HOM05D005047 ORTHO05D006540 3.2e-73 278.5 158 82.3
TAR633G1642 Trochodendron aralioides HOM05D005047 ORTHO05D006540 4.2e-73 278.1 160 83.1
Glyma.20G077400 Glycine max HOM05D005047 ORTHO05D006540 5.5e-73 277.7 153 84.3
Gohir.D09G196200 Gossypium hirsutum HOM05D005047 ORTHO05D006540 5.5e-73 277.7 157 82.2
Psat6g048720 Pisum sativum HOM05D005047 ORTHO05D006540 5.5e-73 277.7 155 83.9
RcHm_v2.0_Chr4g0396911 Rosa chinensis HOM05D005047 ORTHO05D006540 7.2e-73 277.3 156 82.1
Gohir.A09G202200 Gossypium hirsutum HOM05D005047 ORTHO05D006540 1.2e-72 276.6 157 81.5
EL10Ac3g06787 Beta vulgaris HOM05D005047 ORTHO05D006540 1.6e-72 276.2 156 82.7
HanXRQChr01g0022691 Helianthus annuus HOM05D005047 ORTHO05D006540 1.6e-72 276.2 153 82.4
Medtr1g047390 Medicago truncatula HOM05D005047 ORTHO05D006540 1.6e-72 276.2 154 83.1
ECA248G2813 Erigeron canadensis HOM05D005047 ORTHO05D006540 2.1e-72 275.8 155 82.6
Duzib212G0386 Durio zibethinus HOM05D005047 ORTHO05D006540 2.7e-72 275.4 155 81.9
TWI73G0442 Tripterygium wilfordii HOM05D005047 ORTHO05D006540 2.7e-72 275.4 157 81.5
Glyma.10G125100 Glycine max HOM05D005047 ORTHO05D006540 6.1e-72 274.2 153 83.7
Phvul.007G236950 Phaseolus vulgaris HOM05D005047 ORTHO05D006540 6.1e-72 274.2 157 80.9
COL.COLO4_34082 Corchorus olitorius HOM05D005047 ORTHO05D006540 7.9e-72 273.9 153 84.3
Os10g0457500 Oryza sativa ssp. japonica HOM05D005047 ORTHO05D006540 1.0e-71 273.5 160 80.6
AL7G42780 Arabidopsis lyrata HOM05D005047 ORTHO05D006540 1.4e-71 273.1 156 81.4
Hma1.2p1_0903F.1_g235140 Hydrangea macrophylla HOM05D005047 ORTHO05D006540 1.4e-71 273.1 156 82.1
Lj6A611T47 Lonicera japonica HOM05D005047 ORTHO05D006540 1.4e-71 273.1 153 84.3
Lalb_Chr01g0010841 Lupinus albus HOM05D005047 ORTHO05D006540 1.4e-71 273.1 157 80.9
Potri.003G175800 Populus trichocarpa HOM05D005047 ORTHO05D006540 1.4e-71 273.1 158 80.4
Ca_11862_v3 Cicer arietinum L. HOM05D005047 ORTHO05D006540 1.8e-71 272.7 154 82.5
Migut.N00337 Erythranthe guttata HOM05D005047 ORTHO05D006540 1.8e-71 272.7 156 80.8
HPP92_015205 Vanilla planifolia HOM05D005047 ORTHO05D006540 1.8e-71 272.7 156 81.4
Potri.001G052400 Populus trichocarpa HOM05D005047 ORTHO05D006540 5.1e-71 271.2 154 82.5
BcaC02g09395 Brassica carinata HOM05D005047 ORTHO05D006540 1.1e-70 270.0 153 80.4
Prupe.1G060800 Prunus persica HOM05D005047 ORTHO05D006540 1.1e-70 270.0 157 80.3
CDE04G3429 Ceratophyllum demersum HOM05D005047 ORTHO05D006540 1.5e-70 269.6 155 80.6
Aa31LG9G3930 Aethionema arabicum HOM05D005047 ORTHO05D006540 2.0e-70 269.2 159 78.6
Lj6g0004838 Lotus japonicus HOM05D005047 ORTHO05D006540 2.0e-70 269.2 158 79.7
AT4G13720 Arabidopsis thaliana HOM05D005047 ORTHO05D006540 2.5e-70 268.9 156 80.1
Sed0007809 Sechium edule HOM05D005047 ORTHO05D006540 3.3e-70 268.5 154 81.8
Sabra03G0128700 Salix brachista HOM05D005047 ORTHO05D006540 4.3e-70 268.1 174 73.6
A04p08470 Brassica napus HOM05D005047 ORTHO05D006540 5.7e-70 267.7 154 80.5
BolC4t25799H Brassica oleracea HOM05D005047 ORTHO05D006540 5.7e-70 267.7 154 80.5
BraA04t16537Z Brassica rapa HOM05D005047 ORTHO05D006540 5.7e-70 267.7 154 80.5
Nitab4.5_0010728g0010 Nicotiana tabacum HOM05D005047 ORTHO05D006540 5.7e-70 267.7 138 91.3
THA.LOC104808728 Tarenaya hassleriana HOM05D005047 ORTHO05D006540 5.7e-70 267.7 153 81.0
BcaB02g08656 Brassica carinata HOM05D005047 ORTHO05D006540 7.4e-70 267.3 155 80.0
Eucgr.H00094 Eucalyptus grandis HOM05D005047 ORTHO05D006540 7.4e-70 267.3 156 80.8
SGA_v2.0_scaffold2G00831 Striga asiatica HOM05D005047 ORTHO05D006540 7.4e-70 267.3 165 77.0
Zm00001eb046670 Zea mays HOM05D005047 ORTHO05D006540 7.4e-70 267.3 159 81.1
Thhalv10026260m.g Eutrema salsugineum HOM05D005047 ORTHO05D006540 1.7e-69 266.2 155 79.4
Sp7g11500 Schrenkiella parvula HOM05D005047 ORTHO05D006540 1.7e-69 266.2 155 79.4
CsaV3_3G011290 Cucumis sativus L. HOM05D005047 ORTHO05D006540 2.2e-69 265.8 152 83.6
AL5G12130 Arabidopsis lyrata HOM05D005047 ORTHO05D006540 2.8e-69 265.4 156 78.8
Carub.0007s2874 Capsella rubella HOM05D005047 ORTHO05D006540 2.8e-69 265.4 156 79.5
SalBow3G2150 Salvia bowleyana HOM05D005047 ORTHO05D006540 4.8e-69 264.6 180 70.0
C04p42210 Brassica napus HOM05D005047 ORTHO05D006540 1.8e-68 262.7 156 79.5
unitig_749.g13975 Utricularia gibba HOM05D005047 ORTHO05D006540 4.1e-68 261.5 155 77.4
Lsat_1_v5_gn_0_4860 Lactuca sativa HOM05D005047 ORTHO05D006540 3.4e-67 258.5 174 70.1
Mapoly0026s0018 Marchantia polymorpha HOM05D005047 ORTHO05D006540 3.8e-66 255.0 151 77.5
Hund19253 Selenicereus undatus HOM05D005047 ORTHO05D006540 5.0e-66 254.6 155 79.4
Ah.13g075240 Amaranthus hybridus HOM05D005047 ORTHO05D006540 7.2e-65 250.8 155 76.8
ATR0088G035 Amborella trichopoda HOM05D005047 ORTHO05D006540 3.6e-64 248.4 141 81.6
Manes.15G048800 Manihot esculenta HOM05D005047 ORTHO05D006540 6.1e-64 247.7 158 72.8
SMO367G0232 Selaginella moellendorffii HOM05D005047 ORTHO05D006540 7.9e-64 247.3 157 72.0
AUR62032663 Chenopodium quinoa HOM05D005047 ORTHO05D006540 1.0e-63 246.9 151 78.1
vmacro00514 Vaccinium macrocarpon HOM05D005047 ORTHO05D006540 1.0e-63 246.9 156 75.0
FAN12G1457 Fragaria x ananassa HOM05D005047 ORTHO05D006540 8.8e-63 243.8 154 75.3
FAN07G0410 Fragaria x ananassa HOM05D005047 ORTHO05D006540 3.3e-62 241.9 154 74.7
Aa31LG9G3940 Aethionema arabicum HOM05D005047 ORTHO05D006540 4.4e-62 241.5 176 64.8
Peaxi162Scf00047g01312 Petunia axillaris HOM05D005047 ORTHO05D006540 4.4e-62 241.5 141 82.3
Manes.03G152700 Manihot esculenta HOM05D005047 ORTHO05D006540 9.7e-62 240.4 158 70.3
Zm00001eb377030 Zea mays HOM05D005047 ORTHO05D006540 1.7e-61 239.6 140 79.3
Pp3c16_19640 Physcomitrium patens HOM05D005047 ORTHO05D006540 2.8e-61 238.8 151 74.2
Atru.chr4.1794 Acer truncatum HOM05D005047 ORTHO05D006540 4.8e-61 238.0 135 80.7
ClCG05G003600 Citrullus lanatus HOM05D005047 ORTHO05D006540 3.1e-60 235.3 152 75.7
VMungo0720G0344 Vigna mungo HOM05D005047 ORTHO05D006540 3.1e-60 235.3 209 58.9
Oeu006715.2 Olea europaea HOM05D005047 ORTHO05D006540 1.2e-59 233.4 164 70.7
Dinv29555 Davidia involucrata HOM05D005047 ORTHO05D006540 2.0e-59 232.6 151 76.8
AagrBONN_evm.TU.Sc2ySwM_344.3277 Anthoceros agrestis HOM05D005047 ORTHO05D006540 5.5e-57 224.6 151 68.9
Aqoxy2G03810 Aquilegia oxysepala HOM05D005047 ORTHO05D006540 2.7e-56 222.2 139 74.1
Rhsim09G0049500 Rhododendron simsii HOM05D005047 ORTHO05D006540 1.4e-55 219.9 133 77.4
AUR62035305 Chenopodium quinoa HOM05D005047 ORTHO05D006540 4.0e-55 218.4 214 55.1
Nn3g19880 Nelumbo nucifera HOM05D005047 ORTHO05D006540 8.2e-53 210.7 154 66.9
MBI07_g19553_MAGBIO Magnolia biondii HOM05D005047 ORTHO05D006540 7.0e-52 207.6 178 59.6
Zm00001eb102100 Zea mays HOM05D005047 ORTHO05D006540 7.0e-52 207.6 140 73.6
Zm00001eb086240 Zea mays HOM05D005047 ORTHO05D006540 1.2e-51 206.8 116 81.0
MCO04G006 Micromonas commoda HOM05D005047 ORTHO05D006540 2.0e-51 206.1 140 65.0
Cre02.g095089 Chlamydomonas reinhardtii HOM05D005047 ORTHO05D006540 5.9e-51 204.5 145 64.8
MD13G1230900 Malus domestica HOM05D005047 ORTHO05D006540 1.6e-48 196.4 110 79.1
CARHR219510 Cardamine hirsuta HOM05D005047 ORTHO05D006540 4.7e-48 194.9 134 67.9
QL06p023224 Quercus lobata HOM05D005047 ORTHO05D006540 6.1e-48 194.5 108 79.6
arahy.Tifrunner.gnm1.ann1.0X932T Arachis hypogaea HOM05D005047 ORTHO05D006540 3.0e-47 192.2 129 67.4
SHI24117 Sapria himalayana HOM05D005047 ORTHO05D006540 2.2e-45 186.0 159 56.6
Actinidia37393 Actinidia chinensis HOM05D005047 ORTHO05D006540 8.3e-45 184.1 138 67.4
PRCOL_00006994 Prasinoderma coloniale HOM05D005047 ORTHO05D006540 1.8e-44 183.0 146 59.6
Cfa024488 Carpinus fangiana HOM05D005047 ORTHO05D006540 4.7e-40 168.3 144 58.3
Zm00001eb177140 Zea mays HOM05D005047 ORTHO05D006540 1.4e-39 166.8 103 73.8
arahy.Tifrunner.gnm1.ann1.BK86JE Arachis hypogaea HOM05D005047 ORTHO05D006540 1.8e-39 166.4 101 73.3
Cre13.g568950 Chlamydomonas reinhardtii HOM05D005047 ORTHO05D006540 1.8e-36 156.4 148 51.4
Sed0007961 Sechium edule HOM05D005047 ORTHO05D006540 4.1e-36 155.2 148 58.1
Carub.0007s2873 Capsella rubella HOM05D005047 ORTHO05D006540 1.2e-35 153.7 94 73.4
TWI09G0343 Tripterygium wilfordii HOM05D005047 ORTHO05D006540 1.5e-33 146.7 97 69.1
Zm00001eb180620 Zea mays HOM05D005047 ORTHO05D006540 1.9e-33 146.4 88 75.0
Zm00001eb425490 Zea mays HOM05D005047 ORTHO05D006540 8.9e-31 137.5 74 78.4
FAN17G1156 Fragaria x ananassa HOM05D005047 ORTHO05D006540 1.6e-24 116.7 70 75.7
SEGI_09208 Sequoiadendron giganteum HOM05D005047 ORTHO05D006540 2.3e-18 96.3 67 65.7
Sabra01G0036900 Salix brachista HOM05D005047 ORTHO05D006540 1.9e-17 93.2 48 81.2
CBR_g49288 Chara braunii HOM05D005047 ORTHO05D006540 2.1e-16 89.7 61 65.6
DCAR_002273 Daucus carota HOM05D005047 ORTHO05D006540 2.8e-16 89.4 43 95.3
MSTRG.21943 Avicennia marina HOM05D005047 ORTHO05D006540 3.6e-16 89.0 43 95.3
MELO3C031602.2 Cucumis melo HOM05D005047 ORTHO05D006540 6.2e-16 88.2 45 91.1
TAR636G1612 Trochodendron aralioides HOM05D005047 ORTHO05D006540 1.1e-15 87.4 44 93.2
QL06p023220 Quercus lobata HOM05D005047 ORTHO05D006540 2.3e-15 86.3 43 93.0
FvH4_4g05750 Fragaria vesca HOM05D005047 ORTHO05D006540 8.9e-15 84.3 42 92.9
Medtr1g047400 Medicago truncatula HOM05D005047 ORTHO05D006540 1.7e-13 80.1 60 68.3
TAR633G2043 Trochodendron aralioides HOM05D004282 ORTHO05D006540 1.9e-12 76.6 42 88.1
EL10Ac7g17560 Beta vulgaris HOM05D005047 ORTHO05D006373 4.6e-11 72.0 38 78.9
EL10Ac6g14438 Beta vulgaris HOM05D005047 ORTHO05D006540 2.3e-10 69.7 38 76.3
Ca_28777_v3 Cicer arietinum L. HOM05D005047 ORTHO05D147776 3.0e-10 69.3 139 36.7
arahy.Tifrunner.gnm1.ann1.FRRS2Q Arachis hypogaea HOM05D005047 ORTHO05D084578 1.2e-08 63.9 68 45.6
FvH4_6g44040 Fragaria vesca HOM05D005047 ORTHO05D006540 4.0e-07 58.9 39 74.4
FAN26G2286 Fragaria x ananassa HOM05D005047 ORTHO05D006540 8.9e-07 57.8 34 79.4
FvH4_5g32911 Fragaria vesca HOM05D005047 ORTHO05D006540 1.2e-06 57.4 30 86.7
FAN01G1709 Fragaria x ananassa HOM05D005047 ORTHO05D006540 1.2e-06 57.4 39 71.8
FAN27G1012 Fragaria x ananassa HOM05D029863 ORTHO05D006540 3.4e-06 55.8 30 83.3
CsaV3_6G019130 Cucumis sativus L. HOM05D005047 ORTHO05D006540 5.8e-06 55.1 41 63.4


User provided reference genes

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