Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G500.70 Capsicum annuum HOM05D005505 ORTHO05D006974 4.2e-284 980.7 503 100.0
Solyc09g091570.2 Solanum lycopersicum HOM05D005505 ORTHO05D006974 9.4e-260 899.8 504 91.5
Sopen09g034490 Solanum pennellii HOM05D005505 ORTHO05D006974 2.7e-259 898.3 504 91.5
Peaxi162Scf00047g01039 Petunia axillaris HOM05D005505 ORTHO05D006974 1.2e-251 872.8 503 90.5
Nitab4.5_0000306g0020 Nicotiana tabacum HOM05D005505 ORTHO05D006974 3.6e-251 871.3 517 86.8
Nitab4.5_0004881g0030 Nicotiana tabacum HOM05D005505 ORTHO05D006974 1.4e-247 859.4 510 85.1
PGSC0003DMG400029626 Solanum tuberosum HOM05D005505 ORTHO05D006974 8.9e-226 786.9 432 93.3
Actinidia35954 Actinidia chinensis HOM05D005505 ORTHO05D006974 3.9e-205 718.4 507 71.8
vmacro00503 Vaccinium macrocarpon HOM05D005505 ORTHO05D006974 1.4e-202 709.9 503 70.4
ECA233G0503 Erigeron canadensis HOM05D005505 ORTHO05D006974 6.6e-197 691.0 513 68.6
Prupe.5G110900 Prunus persica HOM05D005505 ORTHO05D006974 1.1e-194 683.7 509 67.4
HanXRQChr10g0278391 Helianthus annuus HOM05D005505 ORTHO05D006974 4.0e-194 681.8 511 68.1
Cc03_g07370 Coffea canephora HOM05D005505 ORTHO05D006974 5.2e-194 681.4 502 68.5
Ciclev10004754m.g Citrus clementina HOM05D005505 ORTHO05D006974 1.7e-192 676.4 508 67.1
MSTRG.9830 Avicennia marina HOM05D005505 ORTHO05D006974 1.4e-191 673.3 500 68.4
MELO3C016329.2 Cucumis melo HOM05D005505 ORTHO05D006974 1.9e-191 672.9 511 67.3
QL09p050425 Quercus lobata HOM05D005505 ORTHO05D006974 2.4e-191 672.5 513 66.3
RcHm_v2.0_Chr7g0196051 Rosa chinensis HOM05D005505 ORTHO05D006974 7.1e-191 671.0 506 66.8
Lsat_1_v5_gn_2_43080 Lactuca sativa HOM05D005505 ORTHO05D006974 9.3e-191 670.6 501 67.1
DCAR_030788 Daucus carota HOM05D005505 ORTHO05D006974 1.6e-190 669.8 499 66.9
CsaV3_4G006210 Cucumis sativus L. HOM05D005505 ORTHO05D006974 2.7e-190 669.1 511 66.9
Sed0009691 Sechium edule HOM05D005505 ORTHO05D006974 2.7e-190 669.1 511 66.9
ClCG07G007730 Citrullus lanatus HOM05D005505 ORTHO05D006974 1.0e-189 667.2 533 64.7
Manes.03G149700 Manihot esculenta HOM05D005505 ORTHO05D006974 1.7e-189 666.4 492 68.3
Migut.G00632 Erythranthe guttata HOM05D005505 ORTHO05D006974 2.3e-189 666.0 501 67.9
SalBow2G0189 Salvia bowleyana HOM05D005505 ORTHO05D006974 2.3e-189 666.0 499 66.7
Potri.001G051200 Populus trichocarpa HOM05D005505 ORTHO05D006974 5.1e-189 664.8 474 70.5
CiPaw.02G067600 Carya illinoinensis HOM05D005505 ORTHO05D006974 8.7e-189 664.1 510 65.5
TAR636G3130 Trochodendron aralioides HOM05D005505 ORTHO05D006974 8.7e-189 664.1 506 66.6
MD06G1096300 Malus domestica HOM05D005505 ORTHO05D006974 1.1e-188 663.7 508 66.5
TPR.G26848 Trifolium pratense HOM05D005505 ORTHO05D006974 1.5e-188 663.3 503 65.8
FAN13G1424 Fragaria x ananassa HOM05D005505 ORTHO05D006974 2.5e-188 662.5 506 66.2
Rhsim09G0051500 Rhododendron simsii HOM05D005505 ORTHO05D006974 3.3e-188 662.1 565 62.3
CANSAT21G2364 Cannabis sativa HOM05D005505 ORTHO05D006974 5.6e-188 661.4 505 65.5
FAN18G0472 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.3e-187 660.2 455 71.9
Atru.chr4.1761 Acer truncatum HOM05D005505 ORTHO05D006974 2.0e-185 652.9 505 65.7
CARHR099990 Cardamine hirsuta HOM05D005505 ORTHO05D006974 2.0e-185 652.9 505 65.9
FAN13G2718 Fragaria x ananassa HOM05D005505 ORTHO05D006974 2.6e-185 652.5 514 65.0
TWI53G0062 Tripterygium wilfordii HOM05D005505 ORTHO05D006974 4.5e-185 651.7 508 65.4
BcaB06g26566 Brassica carinata HOM05D005505 ORTHO05D006974 5.8e-185 651.4 505 65.0
FvH4_5g03680 Fragaria vesca HOM05D005505 ORTHO05D006974 5.8e-185 651.4 455 71.6
SGA_v2.0_scaffold57G20149 Striga asiatica HOM05D005505 ORTHO05D006974 5.8e-185 651.4 502 67.1
PGR142G3770 Punica granatum HOM05D005505 ORTHO05D006974 1.3e-184 650.2 507 65.3
Eucgr.H00086 Eucalyptus grandis HOM05D005505 ORTHO05D006974 6.4e-184 647.9 504 64.1
Thecc.04G209900 Theobroma cacao HOM05D005505 ORTHO05D006974 8.4e-184 647.5 458 70.7
Medtr2g060550 Medicago truncatula HOM05D005505 ORTHO05D006974 1.1e-183 647.1 503 64.0
THA.LOC104821613 Tarenaya hassleriana HOM05D005505 ORTHO05D006974 1.1e-183 647.1 513 64.5
Nn8g40056 Nelumbo nucifera HOM05D005505 ORTHO05D006974 1.9e-183 646.4 504 64.9
arahy.Tifrunner.gnm1.ann1.ZRDJ5X Arachis hypogaea HOM05D005505 ORTHO05D006974 3.2e-183 645.6 506 64.6
COL.COLO4_20306 Corchorus olitorius HOM05D005505 ORTHO05D006974 3.2e-183 645.6 505 65.1
Psat7g176120 Pisum sativum HOM05D005505 ORTHO05D006974 9.3e-183 644.0 506 62.8
MBI10_g16825_MAGBIO Magnolia biondii HOM05D005505 ORTHO05D006974 1.2e-182 643.7 523 63.9
Glyma.08G345200 Glycine max HOM05D005505 ORTHO05D006974 1.6e-182 643.3 506 64.0
AT3G24200 Arabidopsis thaliana HOM05D005505 ORTHO05D006974 2.1e-182 642.9 505 64.8
Carub.0003s2430 Capsella rubella HOM05D005505 ORTHO05D006974 2.1e-182 642.9 505 64.2
arahy.Tifrunner.gnm1.ann1.H9DAM7 Arachis hypogaea HOM05D005505 ORTHO05D006974 4.6e-182 641.7 506 64.2
Lj1g0020537 Lotus japonicus HOM05D005505 ORTHO05D006974 4.6e-182 641.7 503 63.6
BraA07t28623Z Brassica rapa HOM05D005505 ORTHO05D006974 1.0e-181 640.6 505 64.0
Phvul.008G135500 Phaseolus vulgaris HOM05D005505 ORTHO05D006974 1.0e-181 640.6 505 64.0
arahy.Tifrunner.gnm1.ann1.QX4MR3 Arachis hypogaea HOM05D005505 ORTHO05D006974 1.3e-181 640.2 506 64.2
Psat3g151840 Pisum sativum HOM05D005505 ORTHO05D006974 1.8e-181 639.8 506 62.8
C09p75660 Brassica napus HOM05D005505 ORTHO05D006974 2.3e-181 639.4 505 63.8
A07p08370 Brassica napus HOM05D005505 ORTHO05D006974 3.9e-181 638.6 505 63.8
SGA_v2.0_scaffold380G50374 Striga asiatica HOM05D005505 ORTHO05D006974 6.7e-181 637.9 502 65.5
Duzib212G0911 Durio zibethinus HOM05D005505 ORTHO05D006974 3.3e-180 635.6 460 69.6
C07p13070 Brassica napus HOM05D005505 ORTHO05D006974 4.3e-180 635.2 505 63.6
Lalb_Chr19g0126031 Lupinus albus HOM05D005505 ORTHO05D006974 4.3e-180 635.2 500 64.0
FAN04G0744 Fragaria x ananassa HOM05D005505 ORTHO05D006974 7.4e-180 634.4 453 69.5
FAN04G1715 Fragaria x ananassa HOM05D005505 ORTHO05D006974 7.4e-180 634.4 453 69.5
BcaC06g35602 Brassica carinata HOM05D005505 ORTHO05D006974 9.6e-180 634.0 505 63.6
BolC7t41801H Brassica oleracea HOM05D005505 ORTHO05D006974 9.6e-180 634.0 505 63.6
Sabra01G0035800 Salix brachista HOM05D005505 ORTHO05D006974 1.3e-179 633.6 544 60.8
Ca_07402_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 2.8e-179 632.5 504 61.9
Gorai.006G220300 Gossypium raimondii HOM05D005505 ORTHO05D006974 3.7e-179 632.1 467 67.9
Thhalv10002522m.g Eutrema salsugineum HOM05D005505 ORTHO05D006974 1.8e-178 629.8 462 68.4
Gohir.A09G202800 Gossypium hirsutum HOM05D005505 ORTHO05D006974 4.0e-178 628.6 467 67.7
Gohir.D09G196900 Gossypium hirsutum HOM05D005505 ORTHO05D006974 4.0e-178 628.6 467 67.5
Oeu026858.1 Olea europaea HOM05D005505 ORTHO05D006974 4.5e-177 625.2 457 69.6
FAN08G1440 Fragaria x ananassa HOM05D005505 ORTHO05D006974 5.8e-177 624.8 453 69.8
Lalb_Chr03g0041191 Lupinus albus HOM05D005505 ORTHO05D006974 9.9e-177 624.0 504 63.1
Aqoxy2G03778 Aquilegia oxysepala HOM05D005505 ORTHO05D006974 2.2e-176 622.9 502 62.9
Lj5g0018216 Lotus japonicus HOM05D005505 ORTHO05D006974 8.4e-176 620.9 505 62.2
Lj3A577G5 Lonicera japonica HOM05D005505 ORTHO05D006974 1.1e-175 620.5 526 62.0
Lj3C565G3 Lonicera japonica HOM05D005505 ORTHO05D006974 5.5e-175 618.2 439 70.4
Aa31LG8G10580 Aethionema arabicum HOM05D005505 ORTHO05D006974 4.6e-174 615.1 507 61.1
GSVIVG01012536001 Vitis vinifera HOM05D005505 ORTHO05D006974 6.0e-174 614.8 492 63.6
PSO017G4123 Papaver somniferum HOM05D005505 ORTHO05D006974 1.0e-173 614.0 479 64.9
ATR0787G156 Amborella trichopoda HOM05D005505 ORTHO05D006974 6.2e-171 604.7 474 63.7
PSO063G3796 Papaver somniferum HOM05D005505 ORTHO05D006974 3.1e-170 602.4 464 64.9
EL10Ac7g18096 Beta vulgaris HOM05D005505 ORTHO05D006974 5.3e-170 601.7 502 60.8
unitig_32.g10868 Utricularia gibba HOM05D005505 ORTHO05D006974 5.3e-170 601.7 478 63.8
Sc24g0002560 Simmondsia chinensis HOM05D005505 ORTHO05D006974 3.4e-169 599.0 456 64.9
AUR62025680 Chenopodium quinoa HOM05D005505 ORTHO05D006974 1.0e-168 597.4 505 60.0
AUR62001295 Chenopodium quinoa HOM05D005505 ORTHO05D006974 2.9e-168 595.9 501 59.9
Medtr7g051960 Medicago truncatula HOM05D005505 ORTHO05D006974 6.5e-168 594.7 432 67.6
Duzib151G0717 Durio zibethinus HOM05D005505 ORTHO05D006974 7.1e-167 591.3 501 61.9
Cpa.g.sc59.105 Carica papaya HOM05D005505 ORTHO05D006974 2.1e-166 589.7 546 57.3
Zm00001eb211070 Zea mays HOM05D005505 ORTHO05D006974 5.7e-164 581.6 524 58.2
Os03g0839100 Oryza sativa ssp. japonica HOM05D005505 ORTHO05D006974 7.4e-164 581.3 464 62.7
Sp3g21750 Schrenkiella parvula HOM05D005505 ORTHO05D006974 2.2e-160 569.7 422 67.3
MD14G1116500 Malus domestica HOM05D005505 ORTHO05D006974 1.9e-156 556.6 447 64.0
Hund05658 Selenicereus undatus HOM05D005505 ORTHO05D006974 3.3e-156 555.8 497 58.4
SHI00938 Sapria himalayana HOM05D005505 ORTHO05D006974 6.5e-152 541.6 474 57.8
Lj3A578G8 Lonicera japonica HOM05D005505 ORTHO05D006974 2.2e-144 516.5 371 70.6
SEGI_35699 Sequoiadendron giganteum HOM05D005505 ORTHO05D006974 8.5e-144 514.6 470 55.1
Lj3A579T16 Lonicera japonica HOM05D005505 ORTHO05D006974 1.4e-141 507.3 415 64.8
BcaC05g30344 Brassica carinata HOM05D005505 ORTHO05D007330 2.3e-141 506.5 501 54.5
Dinv38263 Davidia involucrata HOM05D005505 ORTHO05D006974 1.5e-140 503.8 375 68.3
Haze_11578 Corylus avellana HOM05D005505 ORTHO05D006974 2.4e-138 496.5 356 69.1
SpUn0001_0240 Schrenkiella parvula HOM05D005505 ORTHO05D006974 5.9e-129 465.3 448 55.4
CAN.G220.36 Capsicum annuum HOM05D005505 ORTHO05D006974 1.3e-128 464.2 685 46.1
CDE02G0375 Ceratophyllum demersum HOM05D005505 ORTHO05D006974 1.6e-121 440.7 384 59.9
Mapoly0028s0013 Marchantia polymorpha HOM05D005505 ORTHO05D006974 3.5e-121 439.5 480 47.9
Pp3c26_12110 Physcomitrium patens HOM05D005505 ORTHO05D006974 8.9e-117 424.9 448 51.1
SMO351G0576 Selaginella moellendorffii HOM05D005505 ORTHO05D006974 5.0e-112 409.1 441 49.9
arahy.Tifrunner.gnm1.ann1.NU2AG4 Arachis hypogaea HOM05D005505 ORTHO05D006974 4.4e-108 396.0 362 56.6
SpUn0001_0260 Schrenkiella parvula HOM05D005505 ORTHO05D006974 9.8e-108 394.8 498 46.2
Lj3A580T64 Lonicera japonica HOM05D005505 ORTHO05D006974 1.3e-107 394.4 391 57.3
Lj3A565G17 Lonicera japonica HOM05D005505 ORTHO05D006974 2.9e-91 340.1 327 58.4
Gohir.D09G197033 Gossypium hirsutum HOM05D005505 ORTHO05D006974 3.7e-91 339.7 288 59.7
MCO15G051 Micromonas commoda HOM05D005505 ORTHO05D006974 2.2e-75 287.3 471 36.7
Cre02.g112850 Chlamydomonas reinhardtii HOM05D005505 ORTHO05D006974 4.9e-67 259.6 463 35.9
HPP92_019865 Vanilla planifolia HOM05D005505 ORTHO05D006974 1.4e-66 258.1 459 38.3
AL3G39020 Arabidopsis lyrata HOM05D005505 ORTHO05D006974 2.1e-65 254.2 235 57.0
BolC5t35086H Brassica oleracea HOM05D005505 ORTHO05D006974 2.9e-59 233.8 200 59.0
PRCOL_00000308 Prasinoderma coloniale HOM05D005505 ORTHO05D006974 8.7e-56 222.2 366 36.3
Lj3A566G16 Lonicera japonica HOM05D005505 ORTHO05D006974 9.6e-55 218.8 157 71.3
Cfa022008 Carpinus fangiana HOM05D005505 ORTHO05D006974 3.8e-51 206.8 482 31.3
CBR_g34017 Chara braunii HOM05D005505 ORTHO05D006974 6.7e-40 169.5 209 41.1
CBR_g34015 Chara braunii HOM05D005505 ORTHO05D006974 1.0e-35 155.6 243 39.9
SpUn0242_NC2199 Schrenkiella parvula HOM05D005505 ORTHO05D006974 1.4e-34 151.8 102 70.6
Lj3A578G7 Lonicera japonica HOM05D005505 ORTHO05D006974 1.1e-29 135.6 92 71.7
Haze_11577 Corylus avellana HOM05D005505 ORTHO05D006974 7.7e-28 129.4 115 58.3
Actinidia34626 Actinidia chinensis HOM05D005505 ORTHO05D006974 1.4e-24 118.6 100 60.0
Ca_29365_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 2.4e-21 107.8 340 25.3
Lj3A579T17 Lonicera japonica HOM05D005505 ORTHO05D006974 1.5e-15 88.6 62 69.4
AL3G39220 Arabidopsis lyrata HOM05D005505 ORTHO05D000101 1.3e-11 75.5 44 72.7
CDE09G0201 Ceratophyllum demersum HOM05D000090 ORTHO05D001584 3.8e-11 73.9 49 71.4
Lj3A565T20 Lonicera japonica HOM05D005505 ORTHO05D006974 2.3e-08 64.7 66 57.6


User provided reference genes

Program Settings