Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G50.16 Capsicum annuum HOM05D005618 ORTHO05D007278 1.7e-120 436.0 222 100.0
PGSC0003DMG400012093 Solanum tuberosum HOM05D005618 ORTHO05D007278 2.5e-103 379.0 220 89.5
Solyc08g016670.3 Solanum lycopersicum HOM05D005618 ORTHO05D007278 1.2e-102 376.7 220 88.6
Sopen08g007080 Solanum pennellii HOM05D005618 ORTHO05D007278 3.0e-101 372.1 220 87.7
Nitab4.5_0006887g0020 Nicotiana tabacum HOM05D005618 ORTHO05D007278 1.6e-99 366.3 220 85.9
Peaxi162Scf01211g00117 Petunia axillaris HOM05D005618 ORTHO05D007278 1.4e-95 353.2 264 71.6
Lalb_Chr09g0328651 Lupinus albus HOM05D005618 ORTHO05D007278 7.7e-89 330.9 212 77.4
SGA_v2.0_scaffold1G00178 Striga asiatica HOM05D005618 ORTHO05D007278 1.3e-88 330.1 218 76.1
Nitab4.5_0000420g0030 Nicotiana tabacum HOM05D005618 ORTHO05D007278 1.7e-88 329.7 220 79.1
CANSAT35G0334 Cannabis sativa HOM05D005618 ORTHO05D007278 3.8e-88 328.6 216 74.1
CDE06G1306 Ceratophyllum demersum HOM05D005618 ORTHO05D007278 1.1e-87 327.0 215 75.3
COL.COLO4_31069 Corchorus olitorius HOM05D005618 ORTHO05D007278 1.1e-87 327.0 215 76.3
Dinv32254 Davidia involucrata HOM05D005618 ORTHO05D007278 1.1e-87 327.0 216 76.4
Thecc.06G150300 Theobroma cacao HOM05D005618 ORTHO05D007278 1.9e-87 326.2 221 75.1
Gohir.A10G041000 Gossypium hirsutum HOM05D005618 ORTHO05D007278 3.2e-87 325.5 219 74.9
Duzib235G0110 Durio zibethinus HOM05D005618 ORTHO05D007278 7.2e-87 324.3 221 75.1
HanXRQChr15g0480861 Helianthus annuus HOM05D005618 ORTHO05D007278 7.2e-87 324.3 216 74.5
MSTRG.7487 Avicennia marina HOM05D005618 ORTHO05D007278 9.4e-87 323.9 226 72.1
Cc00_g08440 Coffea canephora HOM05D005618 ORTHO05D007278 1.6e-86 323.2 216 73.6
TWI53G0952 Tripterygium wilfordii HOM05D005618 ORTHO05D007278 1.6e-86 323.2 216 73.6
MSTRG.16244 Avicennia marina HOM05D005618 ORTHO05D007278 2.7e-86 322.4 228 70.6
CDE02G0590 Ceratophyllum demersum HOM05D005618 ORTHO05D007278 3.6e-86 322.0 213 74.2
QL05p057939 Quercus lobata HOM05D005618 ORTHO05D007278 6.1e-86 321.2 216 72.7
CiPaw.10G091700 Carya illinoinensis HOM05D005618 ORTHO05D007278 1.0e-85 320.5 216 73.1
CiPaw.09G123100 Carya illinoinensis HOM05D005618 ORTHO05D007278 3.0e-85 318.9 216 71.3
Gohir.D10G041800 Gossypium hirsutum HOM05D005618 ORTHO05D007278 3.9e-85 318.5 219 74.4
Duzib192G0044 Durio zibethinus HOM05D005618 ORTHO05D007278 5.1e-85 318.2 221 73.8
Eucgr.D00295 Eucalyptus grandis HOM05D005618 ORTHO05D007278 5.1e-85 318.2 216 73.6
arahy.Tifrunner.gnm1.ann1.LME4NB Arachis hypogaea HOM05D005618 ORTHO05D007278 6.7e-85 317.8 215 72.6
FAN11G3487 Fragaria x ananassa HOM05D005618 ORTHO05D007278 1.1e-84 317.0 220 71.8
FvH4_3g05510 Fragaria vesca HOM05D005618 ORTHO05D007278 1.5e-84 316.6 220 71.4
Gohir.A05G148300 Gossypium hirsutum HOM05D005618 ORTHO05D007278 1.5e-84 316.6 222 74.3
Lj4g0005080 Lotus japonicus HOM05D005618 ORTHO05D007278 1.5e-84 316.6 215 73.0
FAN16G1298 Fragaria x ananassa HOM05D005618 ORTHO05D007278 2.0e-84 316.2 220 71.8
FAN25G1374 Fragaria x ananassa HOM05D005618 ORTHO05D007278 2.0e-84 316.2 220 71.8
Hma1.2p1_0053F.1_g030930 Hydrangea macrophylla HOM05D005618 ORTHO05D007278 2.0e-84 316.2 215 72.1
FAN21G3768 Fragaria x ananassa HOM05D005618 ORTHO05D007278 2.6e-84 315.8 220 71.8
arahy.Tifrunner.gnm1.ann1.R3FQ90 Arachis hypogaea HOM05D005618 ORTHO05D007278 4.4e-84 315.1 215 72.1
Gorai.011G044400 Gossypium raimondii HOM05D005618 ORTHO05D007278 5.7e-84 314.7 221 72.9
Migut.M00907 Erythranthe guttata HOM05D005618 ORTHO05D007278 7.4e-84 314.3 221 72.9
SalBow8G3565 Salvia bowleyana HOM05D005618 ORTHO05D007278 7.4e-84 314.3 229 69.4
VMungo0251G3758 Vigna mungo HOM05D005618 ORTHO05D007278 9.7e-84 313.9 215 71.2
Lsat_1_v5_gn_7_28281 Lactuca sativa HOM05D005618 ORTHO05D007278 2.2e-83 312.8 216 71.8
Hund21546 Selenicereus undatus HOM05D005618 ORTHO05D007278 2.8e-83 312.4 216 72.2
Glyma.07G220200 Glycine max HOM05D005618 ORTHO05D007278 3.7e-83 312.0 216 71.3
Nn4g26571 Nelumbo nucifera HOM05D005618 ORTHO05D007278 3.7e-83 312.0 215 71.6
Phvul.002G096900 Phaseolus vulgaris HOM05D005618 ORTHO05D007278 3.7e-83 312.0 215 71.2
DCAR_003916 Daucus carota HOM05D005618 ORTHO05D007278 6.3e-83 311.2 218 69.3
Cfa000939 Carpinus fangiana HOM05D005618 ORTHO05D007278 1.4e-82 310.1 246 64.6
Manes.15G121800 Manihot esculenta HOM05D005618 ORTHO05D007278 1.4e-82 310.1 218 72.5
Oeu034148.1 Olea europaea HOM05D005618 ORTHO05D007278 1.4e-82 310.1 228 67.5
Sc17g0004900 Simmondsia chinensis HOM05D005618 ORTHO05D007278 1.4e-82 310.1 217 72.4
THA.LOC104814300 Tarenaya hassleriana HOM05D005618 ORTHO05D007278 1.4e-82 310.1 215 71.2
Gorai.009G154900 Gossypium raimondii HOM05D005618 ORTHO05D007278 2.4e-82 309.3 222 73.0
Lalb_Chr05g0219641 Lupinus albus HOM05D005618 ORTHO05D007278 3.1e-82 308.9 217 71.0
Manes.17G070300 Manihot esculenta HOM05D005618 ORTHO05D007278 5.3e-82 308.1 216 72.7
GSVIVG01021471001 Vitis vinifera HOM05D005618 ORTHO05D007278 5.3e-82 308.1 215 71.2
Haze_05608 Corylus avellana HOM05D005618 ORTHO05D007278 7.0e-82 307.8 205 73.2
Glyma.20G018500 Glycine max HOM05D005618 ORTHO05D007278 1.2e-81 307.0 215 70.7
Oeu052366.1 Olea europaea HOM05D005618 ORTHO05D007278 1.2e-81 307.0 239 66.1
TAR626G0061 Trochodendron aralioides HOM05D005618 ORTHO05D007278 1.6e-81 306.6 216 69.4
Gohir.D05G150800 Gossypium hirsutum HOM05D005618 ORTHO05D007278 2.0e-81 306.2 225 71.1
RcHm_v2.0_Chr5g0014231 Rosa chinensis HOM05D005618 ORTHO05D007278 2.0e-81 306.2 223 70.0
TPR.G38285 Trifolium pratense HOM05D005618 ORTHO05D007278 3.5e-81 305.4 216 71.8
Ca_18751_v3 Cicer arietinum L. HOM05D005618 ORTHO05D007278 1.0e-80 303.9 216 69.9
Sed0020286 Sechium edule HOM05D005618 ORTHO05D007278 1.3e-80 303.5 217 68.7
ClCG03G006840 Citrullus lanatus HOM05D005618 ORTHO05D007278 1.7e-80 303.1 214 71.0
PGR083G1302 Punica granatum HOM05D005618 ORTHO05D007278 1.7e-80 303.1 216 72.2
THA.LOC104820649 Tarenaya hassleriana HOM05D005618 ORTHO05D007278 1.7e-80 303.1 214 69.2
Sabra11G0068900 Salix brachista HOM05D005618 ORTHO05D007278 2.2e-80 302.8 218 69.7
Ciclev10016692m.g Citrus clementina HOM05D005618 ORTHO05D007278 2.9e-80 302.4 215 72.1
Potri.011G085100 Populus trichocarpa HOM05D005618 ORTHO05D007278 5.0e-80 301.6 218 69.3
Sabra11G0067000 Salix brachista HOM05D005618 ORTHO05D007278 5.0e-80 301.6 218 69.3
SGA_v2.0_scaffold333G48991 Striga asiatica HOM05D005618 ORTHO05D007278 6.5e-80 301.2 224 70.1
Psat7g130040 Pisum sativum HOM05D005618 ORTHO05D007278 1.9e-79 299.7 215 71.2
CsaV3_1G032420 Cucumis sativus L. HOM05D005618 ORTHO05D007278 3.2e-79 298.9 215 69.3
AT1G30070 Arabidopsis thaliana HOM05D005618 ORTHO05D007278 5.5e-79 298.1 219 67.6
BcaB07g32606 Brassica carinata HOM05D005618 ORTHO05D007278 1.2e-78 297.0 219 68.5
Lj2A305G54 Lonicera japonica HOM05D005618 ORTHO05D007278 1.2e-78 297.0 216 66.7
MD05G1283600 Malus domestica HOM05D005618 ORTHO05D007278 1.2e-78 297.0 208 73.6
TAR624G0623 Trochodendron aralioides HOM05D005618 ORTHO05D007278 1.6e-78 296.6 215 69.8
Thhalv10008455m.g Eutrema salsugineum HOM05D005618 ORTHO05D007278 3.6e-78 295.4 216 66.7
ECA236G2996 Erigeron canadensis HOM05D005618 ORTHO05D007278 6.1e-78 294.7 224 67.0
AL1G43960 Arabidopsis lyrata HOM05D005618 ORTHO05D007278 8.0e-78 294.3 218 65.6
BcaC05g27023 Brassica carinata HOM05D005618 ORTHO05D007278 1.8e-77 293.1 219 66.7
C05p28860 Brassica napus HOM05D005618 ORTHO05D007278 1.8e-77 293.1 219 66.7
BolC5t31605H Brassica oleracea HOM05D005618 ORTHO05D007278 1.8e-77 293.1 219 66.7
MELO3C002736.2 Cucumis melo HOM05D005618 ORTHO05D007278 1.8e-77 293.1 216 68.5
Sp1g25930 Schrenkiella parvula HOM05D005618 ORTHO05D007278 1.8e-77 293.1 218 66.5
AUR62002738 Chenopodium quinoa HOM05D005618 ORTHO05D007278 2.3e-77 292.7 216 67.1
AUR62030187 Chenopodium quinoa HOM05D005618 ORTHO05D007278 2.3e-77 292.7 216 67.1
A09p36460 Brassica napus HOM05D005618 ORTHO05D007278 5.2e-77 291.6 219 66.7
BraA09t39168Z Brassica rapa HOM05D005618 ORTHO05D007278 5.2e-77 291.6 219 66.7
Carub.0001s2829 Capsella rubella HOM05D005618 ORTHO05D007278 1.5e-76 290.0 215 66.5
HPP92_020290 Vanilla planifolia HOM05D005618 ORTHO05D007278 4.4e-76 288.5 224 64.7
PSO675G5881 Papaver somniferum HOM05D005618 ORTHO05D007278 2.8e-75 285.8 240 63.3
vmacro10962 Vaccinium macrocarpon HOM05D005618 ORTHO05D007278 8.2e-75 284.3 256 60.5
Aa31LG6G5600 Aethionema arabicum HOM05D005618 ORTHO05D007278 1.6e-73 280.0 227 63.0
Ah.09g232560 Amaranthus hybridus HOM05D005618 ORTHO05D007278 2.7e-73 279.3 250 61.2
ATR0730G012 Amborella trichopoda HOM05D005618 ORTHO05D007278 5.9e-73 278.1 213 63.4
Zm00001eb370650 Zea mays HOM05D005618 ORTHO05D007278 1.0e-72 277.3 216 62.5
Aqoxy1G01706 Aquilegia oxysepala HOM05D005618 ORTHO05D007278 2.9e-72 275.8 222 64.0
MD10G1261800 Malus domestica HOM05D005618 ORTHO05D007278 5.0e-72 275.0 208 68.3
Atru.chr10.1223 Acer truncatum HOM05D005618 ORTHO05D007278 1.1e-71 273.9 203 65.5
Os01g0757500 Oryza sativa ssp. japonica HOM05D005618 ORTHO05D007278 1.9e-71 273.1 220 60.9
CARHR029340 Cardamine hirsuta HOM05D005618 ORTHO05D007278 5.5e-71 271.6 217 61.8
Actinidia39574 Actinidia chinensis HOM05D005618 ORTHO05D007278 2.7e-70 269.2 159 80.5
CSS0012983 Camellia sinensis var. sinensis HOM05D005618 ORTHO05D007278 1.4e-69 266.9 189 70.9
SEGI_02039 Sequoiadendron giganteum HOM05D005618 ORTHO05D007278 1.8e-69 266.5 221 59.7
Zm00001eb152680 Zea mays HOM05D005618 ORTHO05D007278 1.2e-68 263.8 212 62.3
MBI10_g30420_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 9.8e-68 260.8 186 67.2
Medtr4g084250 Medicago truncatula HOM05D005618 ORTHO05D007278 9.8e-68 260.8 217 63.6
Nn3g20783 Nelumbo nucifera HOM05D005618 ORTHO05D007278 1.0e-64 250.8 184 68.5
AUR62026670 Chenopodium quinoa HOM05D005618 ORTHO05D007278 6.1e-62 241.5 193 63.2
Rhsim02G0158200 Rhododendron simsii HOM05D005618 ORTHO05D007278 1.2e-60 237.3 190 64.7
Mapoly0148s0015 Marchantia polymorpha HOM05D005618 ORTHO05D007278 2.8e-59 232.6 240 51.7
Pp3c4_13920 Physcomitrium patens HOM05D005618 ORTHO05D007278 1.1e-58 230.7 218 55.5
Thhalv10002717m.g Eutrema salsugineum HOM05D005618 ORTHO05D007278 7.3e-55 218.0 131 75.6
Cpa.g.c46789 Carica papaya HOM05D005618 ORTHO05D007278 2.1e-54 216.5 121 82.6
Actinidia07695 Actinidia chinensis HOM05D005618 ORTHO05D007278 5.2e-53 211.8 219 55.7
unitig_32.g11444 Utricularia gibba HOM05D005618 ORTHO05D007278 8.3e-51 204.5 114 83.3
AagrBONN_evm.TU.Sc2ySwM_344.1819 Anthoceros agrestis HOM05D005618 ORTHO05D007278 1.6e-49 200.3 238 45.4
Prupe.4G081000 Prunus persica HOM05D005618 ORTHO05D007278 9.5e-47 191.0 233 45.5
SMO364G0114 Selaginella moellendorffii HOM05D005618 ORTHO05D007278 1.6e-46 190.3 205 50.7
AUR62040575 Chenopodium quinoa HOM05D005618 ORTHO05D007278 8.6e-40 167.9 169 52.1
MBI16_g34289_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 1.8e-37 160.2 100 74.0
CBR_g22260 Chara braunii HOM05D005618 ORTHO05D007278 2.6e-36 156.4 256 36.7
SHI24907 Sapria himalayana HOM05D005618 ORTHO05D007278 2.7e-33 146.4 179 48.0
PSO541G3455 Papaver somniferum HOM05D005618 ORTHO05D007278 3.8e-27 125.9 244 37.3
MBI18_g05573_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 7.6e-12 75.1 42 81.0
SHI24908 Sapria himalayana HOM05D005618 ORTHO05D007278 1.7e-11 73.9 83 53.0
SMO353G0169 Selaginella moellendorffii HOM05D005618 ORTHO05D001361 4.2e-10 69.3 44 75.0
Aqoxy7G01552 Aquilegia oxysepala HOM05D005618 ORTHO05D007278 1.6e-09 67.4 36 80.6
SMO364G0864 Selaginella moellendorffii HOM05D005618 ORTHO05D374196 1.5e-07 60.8 204 27.5
LjContig00312_ERROPOS870357g0000946 Lotus japonicus HOM05D001916 ORTHO05D003272 2.5e-07 60.1 199 23.6
MBI18_g05572_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 3.3e-07 59.7 43 62.8
Medtr5g009930 Medicago truncatula HOM05D001916 ORTHO05D003272 9.6e-07 58.2 162 24.1
VMungo1215G1038 Vigna mungo HOM05D001916 ORTHO05D003272 2.8e-06 56.6 163 24.5
QL10p020720 Quercus lobata HOM05D005618 ORTHO05D337099 6.2e-06 55.5 39 71.8
AT1G30060 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 8.1e-06 55.1 27 92.6
Ca_24534_v3 Cicer arietinum L. HOM05D001916 ORTHO05D003272 8.1e-06 55.1 162 23.5


User provided reference genes

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