Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G50.13 Capsicum annuum HOM05D004699 ORTHO05D005668 4.6e-183 644.4 327 100.0
PGSC0003DMG400007657 Solanum tuberosum HOM05D004699 ORTHO05D005668 6.7e-174 614.0 329 95.7
Solyc08g015990.4 Solanum lycopersicum HOM05D004699 ORTHO05D005668 5.7e-173 610.9 329 94.5
Sopen08g006240 Solanum pennellii HOM05D004699 ORTHO05D005668 3.7e-172 608.2 329 94.2
Nitab4.5_0001070g0040 Nicotiana tabacum HOM05D004699 ORTHO05D005668 1.7e-169 599.4 329 93.0
Nitab4.5_0000348g0090 Nicotiana tabacum HOM05D004699 ORTHO05D005668 1.2e-167 593.2 330 91.8
Cc03_g16280 Coffea canephora HOM05D004699 ORTHO05D005668 2.1e-151 539.3 327 81.7
Peaxi162Scf01205g00165 Petunia axillaris HOM05D004699 ORTHO05D005668 2.2e-148 529.3 330 83.9
Nitab4.5_0005353g0020 Nicotiana tabacum HOM05D004699 ORTHO05D005668 1.5e-144 516.5 322 79.2
Nitab4.5_0000219g0050 Nicotiana tabacum HOM05D004699 ORTHO05D005668 2.7e-143 512.3 321 79.1
Dinv11807 Davidia involucrata HOM05D004699 ORTHO05D005668 2.3e-142 509.2 326 76.7
Solyc12g017820.2 Solanum lycopersicum HOM05D004699 ORTHO05D005668 3.0e-142 508.8 327 76.5
PGSC0003DMG400002241 Solanum tuberosum HOM05D004699 ORTHO05D005668 5.2e-142 508.1 327 76.1
CAN.G8.39 Capsicum annuum HOM05D004699 ORTHO05D005668 6.7e-142 507.7 323 77.7
MSTRG.6667 Avicennia marina HOM05D004699 ORTHO05D005668 1.2e-141 506.9 327 74.9
Peaxi162Scf00057g00154 Petunia axillaris HOM05D004699 ORTHO05D005668 7.5e-141 504.2 327 78.0
Actinidia03029 Actinidia chinensis HOM05D004699 ORTHO05D005668 6.3e-140 501.1 326 73.6
PGR142G2805 Punica granatum HOM05D004699 ORTHO05D005668 3.1e-139 498.8 328 74.4
Sopen12g008620 Solanum pennellii HOM05D004699 ORTHO05D005668 1.2e-138 496.9 329 75.1
Eucgr.G02801 Eucalyptus grandis HOM05D004699 ORTHO05D005668 1.3e-137 493.4 328 73.5
Migut.M00004 Erythranthe guttata HOM05D004699 ORTHO05D005668 2.9e-137 492.3 327 72.8
Sc09g0006780 Simmondsia chinensis HOM05D004699 ORTHO05D005668 8.5e-137 490.7 326 73.3
CSS0050516 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 1.5e-136 490.0 326 73.6
TAR633G1364 Trochodendron aralioides HOM05D004699 ORTHO05D005668 1.5e-136 490.0 326 73.6
Actinidia38250 Actinidia chinensis HOM05D004699 ORTHO05D005668 4.2e-136 488.4 322 73.0
CiPaw.15G145000 Carya illinoinensis HOM05D004699 ORTHO05D005668 2.1e-135 486.1 327 73.4
QL08p056836 Quercus lobata HOM05D004699 ORTHO05D005668 2.1e-135 486.1 326 72.7
Potri.008G044100 Populus trichocarpa HOM05D004699 ORTHO05D005668 2.7e-135 485.7 324 73.8
Manes.07G102100 Manihot esculenta HOM05D004699 ORTHO05D005668 1.4e-134 483.4 325 71.4
DCAR_006464 Daucus carota HOM05D004699 ORTHO05D005668 2.3e-134 482.6 322 72.0
CANSAT56G2462 Cannabis sativa HOM05D004699 ORTHO05D005668 5.2e-134 481.5 327 72.2
Potri.010G217400 Populus trichocarpa HOM05D004699 ORTHO05D005668 8.8e-134 480.7 324 73.1
Prupe.2G218300 Prunus persica HOM05D004699 ORTHO05D005668 9.8e-133 477.2 329 72.9
Duzib114G0670 Durio zibethinus HOM05D004699 ORTHO05D005668 2.2e-132 476.1 323 70.6
CSS0042102 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 4.8e-132 474.9 328 71.6
Gohir.D13G022200 Gossypium hirsutum HOM05D004699 ORTHO05D005668 1.4e-131 473.4 323 69.7
Sabra10G0168100 Salix brachista HOM05D004699 ORTHO05D005668 1.4e-131 473.4 324 71.9
Lalb_Chr01g0010171 Lupinus albus HOM05D004699 ORTHO05D005668 2.4e-131 472.6 329 70.8
Gorai.013G025000 Gossypium raimondii HOM05D004699 ORTHO05D005668 7.0e-131 471.1 325 68.9
Ciclev10032131m.g Citrus clementina HOM05D004699 ORTHO05D005668 9.1e-131 470.7 323 70.6
SalBow8G2974 Salvia bowleyana HOM05D004699 ORTHO05D005668 9.1e-131 470.7 328 69.5
Gohir.A13G021600 Gossypium hirsutum HOM05D004699 ORTHO05D005668 2.7e-130 469.2 323 69.0
MD07G1179200 Malus domestica HOM05D004699 ORTHO05D005668 2.7e-130 469.2 329 71.1
Cpa.g.sc53.21 Carica papaya HOM05D004699 ORTHO05D005668 5.9e-130 468.0 324 71.0
Thecc.10G067900 Theobroma cacao HOM05D004699 ORTHO05D005668 7.7e-130 467.6 323 70.0
Glyma.20G177500 Glycine max HOM05D004699 ORTHO05D005668 1.7e-129 466.5 327 70.6
TWI63G1195 Tripterygium wilfordii HOM05D004699 ORTHO05D005668 1.7e-129 466.5 324 72.5
ECA247G2135 Erigeron canadensis HOM05D004699 ORTHO05D005668 2.9e-129 465.7 321 69.2
HanXRQChr07g0195941 Helianthus annuus HOM05D004699 ORTHO05D005668 3.8e-129 465.3 322 69.9
Haze_18894 Corylus avellana HOM05D004699 ORTHO05D005668 5.0e-129 464.9 334 69.5
Lj5g0001210 Lotus japonicus HOM05D004699 ORTHO05D005668 6.6e-129 464.5 327 70.3
MD01G1131100 Malus domestica HOM05D004699 ORTHO05D005668 8.6e-129 464.2 329 71.1
FvH4_7g20140 Fragaria vesca HOM05D004699 ORTHO05D005668 1.1e-128 463.8 330 70.0
FAN06G0847 Fragaria x ananassa HOM05D004699 ORTHO05D005668 1.1e-128 463.8 330 70.0
Nn2g10994 Nelumbo nucifera HOM05D004699 ORTHO05D005668 1.1e-128 463.8 326 69.6
MELO3C022239.2 Cucumis melo HOM05D004699 ORTHO05D005668 3.3e-128 462.2 324 70.4
FAN10G1203 Fragaria x ananassa HOM05D004699 ORTHO05D005668 4.2e-128 461.8 330 69.7
AUR62043639 Chenopodium quinoa HOM05D004699 ORTHO05D005668 5.5e-128 461.5 321 70.1
Ah.10g033030 Amaranthus hybridus HOM05D004699 ORTHO05D005668 2.1e-127 459.5 321 69.8
CsaV3_6G009040 Cucumis sativus L. HOM05D004699 ORTHO05D005668 2.1e-127 459.5 324 69.4
Medtr1g095910 Medicago truncatula HOM05D004699 ORTHO05D005668 4.7e-127 458.4 327 69.1
Ca_10595_v3 Cicer arietinum L. HOM05D004699 ORTHO05D005668 1.0e-126 457.2 324 69.4
RcHm_v2.0_Chr1g0364111 Rosa chinensis HOM05D004699 ORTHO05D005668 3.0e-126 455.7 329 68.4
Aqoxy2G00791 Aquilegia oxysepala HOM05D004699 ORTHO05D005668 4.0e-126 455.3 324 68.8
AUR62020788 Chenopodium quinoa HOM05D004699 ORTHO05D005668 4.0e-126 455.3 324 69.4
Glyma.10G214100 Glycine max HOM05D004699 ORTHO05D005668 1.5e-125 453.4 327 69.1
HanXRQChr14g0453411 Helianthus annuus HOM05D004699 ORTHO05D005668 1.5e-125 453.4 323 67.5
Atru.chr12.635 Acer truncatum HOM05D004699 ORTHO05D005668 2.0e-125 453.0 320 67.8
arahy.Tifrunner.gnm1.ann1.3U687E Arachis hypogaea HOM05D004699 ORTHO05D005668 5.7e-125 451.4 324 68.8
Psat6g186040 Pisum sativum HOM05D004699 ORTHO05D005668 1.3e-124 450.3 327 67.6
Sabra08G0030500 Salix brachista HOM05D004699 ORTHO05D005668 1.3e-124 450.3 371 62.5
VMungo0720G0718 Vigna mungo HOM05D004699 ORTHO05D005668 2.2e-124 449.5 321 69.2
arahy.Tifrunner.gnm1.ann1.TH86UG Arachis hypogaea HOM05D004699 ORTHO05D005668 6.3e-124 448.0 324 68.2
Phvul.007G091600 Phaseolus vulgaris HOM05D004699 ORTHO05D005668 1.4e-123 446.8 327 67.9
ClCG06G002910 Citrullus lanatus HOM05D004699 ORTHO05D005668 1.8e-123 446.4 321 68.5
Sed0011372 Sechium edule HOM05D004699 ORTHO05D005668 1.2e-122 443.7 322 67.4
Gorai.012G093600 Gossypium raimondii HOM05D004699 ORTHO05D005668 1.7e-121 439.9 323 65.3
Lalb_Chr21g0305871 Lupinus albus HOM05D004699 ORTHO05D005668 1.5e-120 436.8 324 66.4
THA.LOC104799349 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 3.3e-120 435.6 326 67.2
Gohir.A05G344400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 4.3e-120 435.3 323 64.1
Oeu061895.3 Olea europaea HOM05D004699 ORTHO05D005668 4.7e-119 431.8 318 66.7
AT5G63220 Arabidopsis thaliana HOM05D004699 ORTHO05D005668 2.3e-118 429.5 325 64.6
ATR0661G308 Amborella trichopoda HOM05D004699 ORTHO05D005668 3.4e-117 425.6 307 68.7
AL8G40300 Arabidopsis lyrata HOM05D004699 ORTHO05D005668 5.8e-117 424.9 325 64.3
Aa31LG1G18760 Aethionema arabicum HOM05D004699 ORTHO05D005668 7.5e-117 424.5 325 64.3
BcaC01g02566 Brassica carinata HOM05D004699 ORTHO05D005668 2.2e-116 422.9 325 63.7
THA.LOC104827325 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 2.2e-116 422.9 325 65.5
CARHR277070 Cardamine hirsuta HOM05D004699 ORTHO05D005668 3.7e-116 422.2 325 64.0
arahy.Tifrunner.gnm1.ann1.32M4WS Arachis hypogaea HOM05D004699 ORTHO05D005668 6.4e-116 421.4 309 66.7
Thhalv10004594m.g Eutrema salsugineum HOM05D004699 ORTHO05D005668 8.3e-116 421.0 325 63.4
Carub.0008s2397 Capsella rubella HOM05D004699 ORTHO05D005668 3.2e-115 419.1 325 63.4
vmacro07089 Vaccinium macrocarpon HOM05D004699 ORTHO05D005668 4.1e-115 418.7 417 56.4
A06p29940 Brassica napus HOM05D004699 ORTHO05D005668 5.4e-115 418.3 323 63.8
Sp2g26340 Schrenkiella parvula HOM05D004699 ORTHO05D005668 7.0e-115 417.9 325 63.7
BolC3t18594H Brassica oleracea HOM05D004699 ORTHO05D005668 1.2e-114 417.2 323 63.2
PSO765G0019 Papaver somniferum HOM05D004699 ORTHO05D005668 2.0e-114 416.4 324 63.9
PSO349G0185 Papaver somniferum HOM05D004699 ORTHO05D005668 1.3e-113 413.7 324 63.9
TAR636G2780 Trochodendron aralioides HOM05D004699 ORTHO05D005668 1.5e-112 410.2 279 73.8
Lsat_1_v5_gn_2_110160 Lactuca sativa HOM05D004699 ORTHO05D005668 9.5e-112 407.5 294 67.7
HPP92_021827 Vanilla planifolia HOM05D004699 ORTHO05D005668 2.1e-111 406.4 323 63.2
Hund19333 Selenicereus undatus HOM05D004699 ORTHO05D005668 8.0e-111 404.4 374 58.0
CDE04G1653 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 1.1e-110 404.1 305 63.0
BolC9t53837H Brassica oleracea HOM05D004699 ORTHO05D005668 5.2e-110 401.7 324 61.4
BraA09t36470Z Brassica rapa HOM05D004699 ORTHO05D005668 1.5e-109 400.2 324 60.8
C09p09240 Brassica napus HOM05D004699 ORTHO05D005668 9.8e-109 397.5 324 61.1
Duzib106G1564 Durio zibethinus HOM05D004699 ORTHO05D005668 1.7e-108 396.7 322 61.5
A09p08190 Brassica napus HOM05D004699 ORTHO05D005668 2.9e-108 396.0 325 60.6
SGA_v2.0_scaffold277G46671 Striga asiatica HOM05D004699 ORTHO05D000105 2.9e-108 396.0 545 43.1
Cfa019630 Carpinus fangiana HOM05D004699 ORTHO05D005668 8.6e-105 384.4 266 71.4
CDE07G1914 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 1.5e-104 383.6 290 63.8
Dinv31344 Davidia involucrata HOM05D004699 ORTHO05D005668 1.9e-104 383.3 254 73.6
C03p63420 Brassica napus HOM05D004699 ORTHO05D005668 1.5e-101 373.6 323 57.6
FAN01G1284 Fragaria x ananassa HOM05D004699 ORTHO05D005668 7.5e-101 371.3 324 59.6
FAN03G0794 Fragaria x ananassa HOM05D004699 ORTHO05D005668 1.3e-100 370.5 324 59.0
BraA06t25945Z Brassica rapa HOM05D004699 ORTHO05D005668 8.3e-100 367.9 324 58.0
Gohir.D04G082900 Gossypium hirsutum HOM05D004699 ORTHO05D005668 3.9e-97 359.0 323 57.0
CDE07G0668 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 1.2e-93 347.4 326 55.8
GSVIVG01016338001 Vitis vinifera HOM05D004699 ORTHO05D005668 1.2e-93 347.4 685 34.7
arahy.Tifrunner.gnm1.ann1.UD3ZER Arachis hypogaea HOM05D004699 ORTHO05D005668 1.4e-91 340.5 289 60.6
Zm00001eb123410 Zea mays HOM05D004699 ORTHO05D005668 9.6e-88 327.8 269 62.5
Lj8C95T3 Lonicera japonica HOM05D004699 ORTHO05D005668 6.2e-87 325.1 234 65.8
arahy.Tifrunner.gnm1.ann1.I3EVQT Arachis hypogaea HOM05D004699 ORTHO05D005668 9.0e-86 321.2 265 61.1
TPR.G1830 Trifolium pratense HOM05D004699 ORTHO05D005668 1.5e-85 320.5 222 72.5
Mapoly0019s0063 Marchantia polymorpha HOM05D004699 ORTHO05D005668 9.3e-83 311.2 307 51.1
Hund22480 Selenicereus undatus HOM05D004699 ORTHO05D005668 9.3e-83 311.2 257 60.7
Pp3c7_7450 Physcomitrium patens HOM05D004699 ORTHO05D005668 1.7e-81 307.0 310 48.4
Pp3c11_21230 Physcomitrium patens HOM05D004699 ORTHO05D005668 6.6e-81 305.1 310 46.8
CSS0008535 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 9.0e-78 294.7 202 70.3
SMO116G0436 Selaginella moellendorffii HOM05D004699 ORTHO05D005668 5.4e-75 285.4 311 48.9
Rhsim03G0122800 Rhododendron simsii HOM05D004699 ORTHO05D005668 1.5e-72 277.3 177 77.4
Zm00001eb336250 Zea mays HOM05D004699 ORTHO05D005668 1.8e-70 270.4 221 60.2
CBR_g49532 Chara braunii HOM05D004699 ORTHO05D005668 1.5e-53 214.2 303 38.6
AagrBONN_evm.TU.Sc2ySwM_344.3470 Anthoceros agrestis HOM05D004699 ORTHO05D005668 3.3e-40 169.9 198 42.4
Dinv04679 Davidia involucrata HOM05D004699 ORTHO05D005668 6.1e-34 149.1 96 77.1
RcHm_v2.0_Chr5g0038701 Rosa chinensis HOM05D004699 ORTHO05D005668 7.4e-32 142.1 115 62.6
Oeu050294.2 Olea europaea HOM05D004699 ORTHO05D005668 7.0e-30 135.6 119 60.5
CAN.G95.7 Capsicum annuum HOM05D004699 ORTHO05D005668 2.6e-29 133.7 88 80.7
Hma1.2p1_0904F.1_g235250 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 2.2e-28 130.6 86 72.1
Hma1.2p1_0904F.1_g235240 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 2.9e-28 130.2 75 77.3
RcHm_v2.0_Chr2g0153331 Rosa chinensis HOM05D004699 ORTHO05D005668 1.1e-27 128.3 115 59.1
Gohir.D05G316201 Gossypium hirsutum HOM05D004699 ORTHO05D005668 2.1e-26 124.0 95 63.2
Gorai.009G338200 Gossypium raimondii HOM05D004699 ORTHO05D005668 3.6e-26 123.2 95 63.2
Cre06.g282950 Chlamydomonas reinhardtii HOM05D004699 ORTHO05D005668 5.5e-19 99.4 330 26.7
SEGI_20090 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 1.5e-16 91.3 83 53.0
Os01g0164700 Oryza sativa ssp. japonica HOM05D004699 ORTHO05D005668 5.9e-13 79.3 69 56.5
CANSAT56G0634 Cannabis sativa HOM05D004699 ORTHO05D033952 2.8e-10 70.5 54 66.7
CANSAT56G3585 Cannabis sativa HOM05D004699 ORTHO05D033952 2.8e-10 70.5 54 66.7
CANSAT56G0323 Cannabis sativa HOM05D004699 ORTHO05D033952 3.6e-10 70.1 54 66.7
CsaV3_6G007970 Cucumis sativus L. HOM05D008150 ORTHO05D010312 3.6e-10 70.1 69 55.1
Gohir.A02G086400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 4.0e-09 66.6 43 72.1
SEGI_31020 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 2.0e-08 64.3 56 53.6
RcHm_v2.0_Chr7g0225301 Rosa chinensis HOM05D004699 ORTHO05D005668 8.3e-07 58.9 70 45.7


User provided reference genes

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