Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G5.44 Capsicum annuum HOM05D005553 ORTHO05D006866 0.0e+00 1205.7 603 100.0
PGSC0003DMG400017493 Solanum tuberosum HOM05D005553 ORTHO05D006866 0.0e+00 1105.1 602 91.2
Sopen09g022770 Solanum pennellii HOM05D005553 ORTHO05D006866 0.0e+00 1096.3 602 90.5
Solyc09g059600.4 Solanum lycopersicum HOM05D005553 ORTHO05D006866 0.0e+00 1091.6 602 90.0
Nitab4.5_0000045g0420 Nicotiana tabacum HOM05D005553 ORTHO05D006866 3.7e-295 1017.7 630 82.2
Nitab4.5_0000345g0010 Nicotiana tabacum HOM05D005553 ORTHO05D006866 1.5e-280 969.1 676 75.3
Peaxi162Scf00238g00217 Petunia axillaris HOM05D005553 ORTHO05D006866 3.4e-240 835.1 590 74.6
Oeu023098.1 Olea europaea HOM05D005553 ORTHO05D006866 5.1e-236 821.2 605 67.1
Dinv12662 Davidia involucrata HOM05D005553 ORTHO05D006866 8.4e-231 803.9 619 66.4
CSS0002030 Camellia sinensis var. sinensis HOM05D005553 ORTHO05D006866 5.3e-225 784.6 611 66.4
Hma1.2p1_1018F.1_g248400 Hydrangea macrophylla HOM05D005553 ORTHO05D006866 2.2e-223 779.2 576 68.1
MSTRG.17999 Avicennia marina HOM05D005553 ORTHO05D006866 1.1e-222 776.9 610 64.8
Cfa002842 Carpinus fangiana HOM05D005553 ORTHO05D006866 2.7e-221 772.3 597 65.8
Cc01_g16820 Coffea canephora HOM05D005553 ORTHO05D006866 6.7e-220 767.7 579 67.2
HanXRQChr07g0189551 Helianthus annuus HOM05D005553 ORTHO05D006866 6.9e-217 757.7 606 63.9
vmacro14742 Vaccinium macrocarpon HOM05D005553 ORTHO05D006866 4.5e-216 755.0 616 63.5
Migut.N00626 Erythranthe guttata HOM05D005553 ORTHO05D006866 2.9e-215 752.3 608 62.3
CANSAT01G0440 Cannabis sativa HOM05D005553 ORTHO05D006866 1.4e-214 750.0 603 63.0
Lj2A1127T50 Lonicera japonica HOM05D005553 ORTHO05D006866 1.4e-214 750.0 580 65.5
Prupe.8G200200 Prunus persica HOM05D005553 ORTHO05D006866 3.2e-214 748.8 597 63.8
Nn1g07927 Nelumbo nucifera HOM05D005553 ORTHO05D006866 4.2e-214 748.4 614 62.4
PGR044G2083 Punica granatum HOM05D005553 ORTHO05D006866 2.7e-213 745.7 604 62.7
Lalb_Chr03g0041571 Lupinus albus HOM05D005553 ORTHO05D006866 1.1e-211 740.3 602 61.3
MD10G1161200 Malus domestica HOM05D005553 ORTHO05D006866 2.5e-211 739.2 598 62.7
Lsat_1_v5_gn_9_13060 Lactuca sativa HOM05D005553 ORTHO05D006866 1.3e-210 736.9 609 62.6
Sc05g0002010 Simmondsia chinensis HOM05D005553 ORTHO05D006866 6.3e-210 734.6 590 63.9
RcHm_v2.0_Chr6g0284311 Rosa chinensis HOM05D005553 ORTHO05D006866 9.0e-209 730.7 603 62.4
CSS0038931 Camellia sinensis var. sinensis HOM05D005553 ORTHO05D006866 1.2e-208 730.3 611 63.3
Eucgr.K02143 Eucalyptus grandis HOM05D005553 ORTHO05D006866 5.9e-208 728.0 608 60.9
Manes.13G047900 Manihot esculenta HOM05D005553 ORTHO05D006866 3.8e-207 725.3 621 60.2
TWI36G0825 Tripterygium wilfordii HOM05D005553 ORTHO05D006866 1.9e-206 723.0 606 61.9
Potri.002G245000 Populus trichocarpa HOM05D005553 ORTHO05D006866 7.2e-206 721.1 606 61.6
PSO063G5023 Papaver somniferum HOM05D005553 ORTHO05D006866 2.1e-205 719.5 607 58.8
FAN27G0725 Fragaria x ananassa HOM05D005553 ORTHO05D006866 4.6e-205 718.4 600 61.2
Ca_24091_v3 Cicer arietinum L. HOM05D005553 ORTHO05D006866 1.4e-204 716.8 611 60.1
Hund05570 Selenicereus undatus HOM05D005553 ORTHO05D006866 1.1e-203 713.8 606 60.2
PSO782G3165 Papaver somniferum HOM05D005553 ORTHO05D006866 1.5e-203 713.4 612 58.5
QL09p052121 Quercus lobata HOM05D005553 ORTHO05D006866 2.5e-203 712.6 579 63.4
Sabra02G0186400 Salix brachista HOM05D005553 ORTHO05D006866 2.5e-203 712.6 584 62.0
QL09p052989 Quercus lobata HOM05D005553 ORTHO05D006866 4.3e-203 711.8 579 63.0
Aqoxy2G03234 Aquilegia oxysepala HOM05D005553 ORTHO05D006866 7.4e-203 711.1 610 58.7
Ah.08g214520 Amaranthus hybridus HOM05D005553 ORTHO05D006866 1.3e-202 710.3 604 59.3
FvH4_2g18680 Fragaria vesca HOM05D005553 ORTHO05D006866 1.7e-202 709.9 604 60.1
Glyma.18G166600 Glycine max HOM05D005553 ORTHO05D006866 6.3e-202 708.0 610 59.0
Ciclev10019403m.g Citrus clementina HOM05D005553 ORTHO05D006866 1.8e-201 706.4 601 60.6
arahy.Tifrunner.gnm1.ann1.T3HSIJ Arachis hypogaea HOM05D005553 ORTHO05D006866 2.4e-201 706.1 612 59.3
FAN24G0205 Fragaria x ananassa HOM05D005553 ORTHO05D006866 2.4e-201 706.1 604 59.8
CsaV3_6G002380 Cucumis sativus L. HOM05D005553 ORTHO05D006866 5.3e-201 704.9 612 58.0
GSVIVG01038357001 Vitis vinifera HOM05D005553 ORTHO05D006866 6.9e-201 704.5 575 62.8
Lj1g0021333 Lotus japonicus HOM05D005553 ORTHO05D006866 1.5e-200 703.4 578 60.9
VMungo1383G1602 Vigna mungo HOM05D005553 ORTHO05D006866 1.5e-200 703.4 605 59.0
Medtr7g056117 Medicago truncatula HOM05D005553 ORTHO05D006866 2.0e-200 703.0 591 59.2
Phvul.008G130400 Phaseolus vulgaris HOM05D005553 ORTHO05D006866 2.0e-200 703.0 602 60.0
Thecc.01G222300 Theobroma cacao HOM05D005553 ORTHO05D006866 5.9e-200 701.4 583 61.9
Gohir.D07G206400 Gossypium hirsutum HOM05D005553 ORTHO05D006866 7.7e-200 701.0 586 60.8
Gorai.001G232700 Gossypium raimondii HOM05D005553 ORTHO05D006866 5.0e-199 698.4 587 60.6
Psat3g147960 Pisum sativum HOM05D005553 ORTHO05D006866 6.5e-199 698.0 605 57.5
COL.COLO4_15644 Corchorus olitorius HOM05D005553 ORTHO05D006866 8.5e-199 697.6 590 60.2
Duzib138G1946 Durio zibethinus HOM05D005553 ORTHO05D006866 8.5e-199 697.6 607 59.3
arahy.Tifrunner.gnm1.ann1.K25WW2 Arachis hypogaea HOM05D005553 ORTHO05D006866 1.4e-198 696.8 612 58.7
CiPaw.03G146800 Carya illinoinensis HOM05D005553 ORTHO05D006866 1.9e-198 696.4 530 65.1
ECA247G0750 Erigeron canadensis HOM05D005553 ORTHO05D006866 2.5e-198 696.0 592 61.7
Atru.chr6.1417 Acer truncatum HOM05D005553 ORTHO05D006866 3.2e-198 695.7 587 60.8
Cpa.g.sc8.131 Carica papaya HOM05D005553 ORTHO05D006866 4.2e-198 695.3 606 59.6
Glyma.08G349700 Glycine max HOM05D005553 ORTHO05D006866 3.6e-197 692.2 594 58.6
Gohir.A07G200000 Gossypium hirsutum HOM05D005553 ORTHO05D006866 1.5e-195 686.8 586 59.7
DCAR_023559 Daucus carota HOM05D005553 ORTHO05D006866 2.0e-195 686.4 572 61.4
Sp3g06120 Schrenkiella parvula HOM05D005553 ORTHO05D006866 4.2e-190 668.7 607 57.5
CARHR081820 Cardamine hirsuta HOM05D005553 ORTHO05D006866 1.6e-189 666.8 601 57.4
AL3G18430 Arabidopsis lyrata HOM05D005553 ORTHO05D006866 2.7e-189 666.0 586 58.2
BcaC05g29748 Brassica carinata HOM05D005553 ORTHO05D006866 1.0e-188 664.1 600 58.5
AT3G07180 Arabidopsis thaliana HOM05D005553 ORTHO05D006866 8.8e-188 661.0 586 58.2
Thhalv10020331m.g Eutrema salsugineum HOM05D005553 ORTHO05D006866 1.1e-187 660.6 598 58.0
Sed0021986 Sechium edule HOM05D005553 ORTHO05D006866 1.5e-187 660.2 579 58.4
PSO339G3667 Papaver somniferum HOM05D005553 ORTHO05D006866 3.3e-187 659.1 563 58.8
Carub.0003s0670 Capsella rubella HOM05D005553 ORTHO05D006866 9.7e-187 657.5 601 55.9
EL10Ac7g17878 Beta vulgaris HOM05D005553 ORTHO05D006866 3.7e-186 655.6 608 56.2
MBI06_g04543_MAGBIO Magnolia biondii HOM05D005553 ORTHO05D006866 3.7e-186 655.6 601 57.4
AL384U10020 Arabidopsis lyrata HOM05D005553 ORTHO05D006866 2.4e-185 652.9 581 57.7
A05p41030 Brassica napus HOM05D005553 ORTHO05D006866 3.1e-185 652.5 601 57.7
THA.LOC104818968 Tarenaya hassleriana HOM05D005553 ORTHO05D006866 5.3e-185 651.7 601 56.7
Aa31LG5G17740 Aethionema arabicum HOM05D005553 ORTHO05D006866 4.5e-184 648.7 602 57.0
BraA05t22829Z Brassica rapa HOM05D005553 ORTHO05D006866 2.2e-183 646.4 601 57.1
Rhsim01G0254300 Rhododendron simsii HOM05D005553 ORTHO05D006866 5.0e-183 645.2 550 62.7
BcaC05g29847 Brassica carinata HOM05D005553 ORTHO05D006866 6.5e-183 644.8 596 57.4
Haze_24835 Corylus avellana HOM05D005553 ORTHO05D006866 6.5e-183 644.8 586 59.0
C05p60190 Brassica napus HOM05D005553 ORTHO05D006866 4.2e-182 642.1 596 57.0
BolC5t34669H Brassica oleracea HOM05D005553 ORTHO05D006866 4.2e-182 642.1 596 57.0
FAN15G3597 Fragaria x ananassa HOM05D005553 ORTHO05D006866 2.3e-180 636.3 651 53.5
Actinidia09473 Actinidia chinensis HOM05D005553 ORTHO05D006866 8.3e-178 627.9 599 56.9
MELO3C020015.2 Cucumis melo HOM05D005553 ORTHO05D006866 1.7e-175 620.2 553 56.8
arahy.Tifrunner.gnm1.ann1.84RPTF Arachis hypogaea HOM05D005553 ORTHO05D006866 2.1e-173 613.2 594 54.2
ClCG09G008830 Citrullus lanatus HOM05D005553 ORTHO05D006866 1.0e-172 610.9 611 53.5
ATR0609G062 Amborella trichopoda HOM05D005553 ORTHO05D006866 5.2e-172 608.6 584 54.6
Haze_24838 Corylus avellana HOM05D005553 ORTHO05D006866 5.2e-172 608.6 597 55.4
Actinidia23714 Actinidia chinensis HOM05D005553 ORTHO05D006866 1.2e-171 607.4 599 57.3
CDE08G1475 Ceratophyllum demersum HOM05D005553 ORTHO05D006866 2.0e-171 606.7 615 53.0
AUR62001118 Chenopodium quinoa HOM05D005553 ORTHO05D006866 2.0e-171 606.7 605 53.2
Zm00001eb365330 Zea mays HOM05D005553 ORTHO05D006866 5.4e-169 598.6 599 53.4
arahy.Tifrunner.gnm1.ann1.62F6YN Arachis hypogaea HOM05D005553 ORTHO05D006866 1.2e-168 597.4 582 54.5
Duzib211G0174 Durio zibethinus HOM05D005553 ORTHO05D006866 3.5e-168 595.9 527 59.4
Os01g0907300 Oryza sativa ssp. japonica HOM05D005553 ORTHO05D006866 4.7e-165 585.5 598 52.7
TAR365G1156 Trochodendron aralioides HOM05D005553 ORTHO05D006866 1.3e-159 567.4 445 63.8
TPR.G6452 Trifolium pratense HOM05D005553 ORTHO05D006866 2.9e-159 566.2 566 53.5
AUR62016558 Chenopodium quinoa HOM05D005553 ORTHO05D006866 3.1e-156 556.2 606 50.8
DCAR_000631 Daucus carota HOM05D005553 ORTHO05D006866 1.7e-154 550.4 572 52.8
SalBow3G3653 Salvia bowleyana HOM05D005553 ORTHO05D006866 4.3e-150 535.8 467 57.2
Potri.002G244801 Populus trichocarpa HOM05D005553 ORTHO05D006866 2.0e-147 526.9 344 73.5
arahy.Tifrunner.gnm1.ann1.B0WXN9 Arachis hypogaea HOM05D005553 ORTHO05D006866 2.9e-146 523.1 593 48.4
SHI14561 Sapria himalayana HOM05D005553 ORTHO05D006866 2.6e-139 500.0 541 50.8
Dinv19184 Davidia involucrata HOM05D005553 ORTHO05D006866 3.4e-139 499.6 444 58.8
Pp3c13_19160 Physcomitrium patens HOM05D005553 ORTHO05D006866 3.9e-119 433.0 608 42.1
Mapoly0045s0104 Marchantia polymorpha HOM05D005553 ORTHO05D006866 2.4e-113 413.7 614 39.4
unitig_0.g372 Utricularia gibba HOM05D005553 ORTHO05D006866 2.3e-111 407.1 518 45.6
AagrBONN_evm.TU.Sc2ySwM_117.1632 Anthoceros agrestis HOM05D005553 ORTHO05D006866 5.7e-102 375.9 565 40.0
SMO353G0187 Selaginella moellendorffii HOM05D005553 ORTHO05D006866 1.6e-101 374.4 574 38.3
arahy.Tifrunner.gnm1.ann1.ET68I8 Arachis hypogaea HOM05D005553 ORTHO05D006866 1.3e-90 338.2 321 53.3
arahy.Tifrunner.gnm1.ann1.SPK719 Arachis hypogaea HOM05D005553 ORTHO05D006866 9.1e-84 315.5 344 48.8
QL05p022419 Quercus lobata HOM05D005553 ORTHO05D006866 5.9e-83 312.8 241 61.4
arahy.Tifrunner.gnm1.ann1.YI9T1V Arachis hypogaea HOM05D005553 ORTHO05D006866 2.2e-77 294.3 378 44.2
QL02p097148 Quercus lobata HOM05D005553 ORTHO05D006866 2.0e-70 271.2 229 56.8
HPP92_001419 Vanilla planifolia HOM05D005553 ORTHO05D008496 1.7e-69 268.1 229 59.0
CBR_g46590 Chara braunii HOM05D005553 ORTHO05D006866 3.5e-67 260.4 443 33.4
arahy.Tifrunner.gnm1.ann1.DF0SS3 Arachis hypogaea HOM05D005553 ORTHO05D006866 9.4e-57 225.7 303 42.9
arahy.Tifrunner.gnm1.ann1.3A36EA Arachis hypogaea HOM05D005553 ORTHO05D006866 1.0e-55 222.2 185 60.5
HPP92_001410 Vanilla planifolia HOM05D005553 ORTHO05D006866 1.0e-55 222.2 181 58.6
SEGI_35984 Sequoiadendron giganteum HOM05D005553 ORTHO05D006866 4.3e-33 147.1 265 37.0
EL10Ac7g17877 Beta vulgaris HOM05D005553 ORTHO05D006866 2.8e-32 144.4 204 44.6
SEGI_34191 Sequoiadendron giganteum HOM05D005553 ORTHO05D006866 2.8e-32 144.4 173 43.4
unitig_0.g371 Utricularia gibba HOM05D005553 ORTHO05D006866 5.2e-23 113.6 74 74.3
Cre01.g013400 Chlamydomonas reinhardtii HOM05D005553 ORTHO05D006866 4.4e-22 110.5 418 25.8
A05p41020 Brassica napus HOM05D005553 ORTHO05D006866 1.2e-19 102.4 228 36.0
Cfa026900 Carpinus fangiana HOM05D005553 ORTHO05D006866 1.2e-19 102.4 328 27.4
arahy.Tifrunner.gnm1.ann1.UUY44J Arachis hypogaea HOM05D005553 ORTHO05D006866 6.6e-18 96.7 192 35.9
TPR.G39542 Trifolium pratense HOM05D005553 ORTHO05D006866 1.1e-15 89.4 47 78.7
TAR365G0595 Trochodendron aralioides HOM05D005553 ORTHO05D006866 5.4e-12 77.0 74 54.1
MCO09G019 Micromonas commoda HOM05D005553 ORTHO05D006866 2.7e-11 74.7 165 30.9
VMungo1383G0327 Vigna mungo HOM05D005553 ORTHO05D006866 2.8e-08 64.7 53 52.8


User provided reference genes

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