Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G497.68 Capsicum annuum HOM05D003495 ORTHO05D015025 1.6e-299 1031.9 493 100.0
CAN.G497.44 Capsicum annuum HOM05D003495 ORTHO05D004159 1.5e-52 211.5 144 76.4
Nitab4.5_0002171g0110 Nicotiana tabacum HOM05D003495 ORTHO05D004159 1.7e-51 208.0 145 74.5
Sopen02g034150 Solanum pennellii HOM05D003495 ORTHO05D004159 4.8e-51 206.5 144 74.3
Nitab4.5_0002978g0060 Nicotiana tabacum HOM05D003495 ORTHO05D004159 6.3e-51 206.1 145 73.8
Peaxi162Scf00020g02133 Petunia axillaris HOM05D003495 ORTHO05D004159 2.4e-50 204.1 146 71.9
Medtr6g016215 Medicago truncatula HOM05D003495 ORTHO05D004159 1.5e-47 194.9 212 52.4
Dinv33880 Davidia involucrata HOM05D003495 ORTHO05D004159 9.5e-47 192.2 146 69.2
Nitab4.5_0001397g0040 Nicotiana tabacum HOM05D003495 ORTHO05D004159 2.1e-46 191.0 147 68.7
TPR.G15949 Trifolium pratense HOM05D003495 ORTHO05D004159 2.1e-46 191.0 146 67.1
Nitab4.5_0000154g0090 Nicotiana tabacum HOM05D003495 ORTHO05D004159 2.8e-46 190.7 147 68.7
CAN.G497.66 Capsicum annuum HOM05D003495 ORTHO05D004159 8.0e-46 189.1 137 74.5
Cc07_g04650 Coffea canephora HOM05D003495 ORTHO05D004159 8.0e-46 189.1 147 68.7
DCAR_011000 Daucus carota HOM05D003495 ORTHO05D004159 8.0e-46 189.1 147 66.7
CANSAT64G2734 Cannabis sativa HOM05D003495 ORTHO05D004159 1.0e-45 188.7 146 66.4
Peaxi162Scf00479g01011 Petunia axillaris HOM05D003495 ORTHO05D004159 1.0e-45 188.7 147 68.0
QL02p063585 Quercus lobata HOM05D003495 ORTHO05D004159 1.0e-45 188.7 145 68.3
Hma1.2p1_0588F.1_g184640 Hydrangea macrophylla HOM05D003495 ORTHO05D004159 1.4e-45 188.3 146 68.5
RcHm_v2.0_Chr2g0117951 Rosa chinensis HOM05D003495 ORTHO05D004159 2.3e-45 187.6 145 67.6
RcHm_v2.0_Chr2g0164371 Rosa chinensis HOM05D003495 ORTHO05D004159 2.3e-45 187.6 145 67.6
FAN09G4792 Fragaria x ananassa HOM05D003495 ORTHO05D004159 3.0e-45 187.2 145 67.6
Prupe.3G246500 Prunus persica HOM05D003495 ORTHO05D004159 3.0e-45 187.2 145 67.6
FAN02G1990 Fragaria x ananassa HOM05D003495 ORTHO05D004159 4.0e-45 186.8 145 67.6
Dinv34893 Davidia involucrata HOM05D003495 ORTHO05D004159 5.2e-45 186.4 146 67.8
CSS0018508 Camellia sinensis var. sinensis HOM05D003495 ORTHO05D004159 6.8e-45 186.0 146 67.8
Lj2g0019402 Lotus japonicus HOM05D003495 ORTHO05D004159 6.8e-45 186.0 146 67.1
Thecc.02G251800 Theobroma cacao HOM05D003495 ORTHO05D004159 6.8e-45 186.0 146 67.8
MD09G1077600 Malus domestica HOM05D003495 ORTHO05D004159 1.2e-44 185.3 145 66.2
Phvul.004G045000 Phaseolus vulgaris HOM05D003495 ORTHO05D004159 1.2e-44 185.3 200 54.0
TAR374G0385 Trochodendron aralioides HOM05D003495 ORTHO05D004159 1.2e-44 185.3 146 67.8
CSS0004216 Camellia sinensis var. sinensis HOM05D003495 ORTHO05D004159 1.5e-44 184.9 146 67.1
ClCG11G005050 Citrullus lanatus HOM05D003495 ORTHO05D004159 2.0e-44 184.5 145 66.9
Gohir.A03G138900 Gossypium hirsutum HOM05D003495 ORTHO05D004159 2.0e-44 184.5 146 67.8
Psat1g064160 Pisum sativum HOM05D003495 ORTHO05D004159 2.0e-44 184.5 212 50.9
Lalb_Chr02g0158651 Lupinus albus HOM05D003495 ORTHO05D004159 2.6e-44 184.1 208 51.4
GSVIVG01036514001 Vitis vinifera HOM05D003495 ORTHO05D004159 3.4e-44 183.7 145 66.2
FvH4_6g46050 Fragaria vesca HOM05D003495 ORTHO05D004159 4.4e-44 183.3 145 66.2
FAN14G1484 Fragaria x ananassa HOM05D003495 ORTHO05D004159 4.4e-44 183.3 145 66.2
FAN14G3604 Fragaria x ananassa HOM05D003495 ORTHO05D004159 4.4e-44 183.3 145 66.2
Gohir.D02G161820 Gossypium hirsutum HOM05D003495 ORTHO05D004159 4.4e-44 183.3 146 67.1
Gorai.005G181800 Gossypium raimondii HOM05D003495 ORTHO05D004159 4.4e-44 183.3 146 67.1
VMungo0464G1145 Vigna mungo HOM05D003495 ORTHO05D004159 4.4e-44 183.3 200 52.5
Ca_20757_v3 Cicer arietinum L. HOM05D003495 ORTHO05D004159 5.7e-44 183.0 147 66.0
MD17G1067900 Malus domestica HOM05D003495 ORTHO05D004159 5.7e-44 183.0 145 66.2
CiPaw.03G081100 Carya illinoinensis HOM05D003495 ORTHO05D004159 9.8e-44 182.2 146 66.4
COL.COLO4_24186 Corchorus olitorius HOM05D003495 ORTHO05D004159 9.8e-44 182.2 146 66.4
FAN05G3267 Fragaria x ananassa HOM05D003495 ORTHO05D004159 9.8e-44 182.2 145 66.2
MELO3C022060.2 Cucumis melo HOM05D003495 ORTHO05D004159 1.3e-43 181.8 145 66.2
Glyma.11G061700 Glycine max HOM05D003495 ORTHO05D004159 1.3e-43 181.8 146 64.4
Glyma.19G037200 Glycine max HOM05D003495 ORTHO05D004159 1.3e-43 181.8 146 64.4
Ciclev10010888m.g Citrus clementina HOM05D003495 ORTHO05D004159 1.7e-43 181.4 146 68.5
Duzib248G1077 Durio zibethinus HOM05D003495 ORTHO05D004159 1.7e-43 181.4 146 67.1
arahy.Tifrunner.gnm1.ann1.AQF1TQ Arachis hypogaea HOM05D003495 ORTHO05D004159 2.2e-43 181.0 146 63.7
MSTRG.3380 Avicennia marina HOM05D003495 ORTHO05D004159 3.7e-43 180.3 143 66.4
Migut.K00878 Erythranthe guttata HOM05D003495 ORTHO05D004159 4.9e-43 179.9 144 67.4
Manes.01G104801 Manihot esculenta HOM05D003495 ORTHO05D004159 6.3e-43 179.5 144 65.3
CSS0005441 Camellia sinensis var. sinensis HOM05D003495 ORTHO05D004159 8.3e-43 179.1 138 68.1
Cpa.g.sc14.256 Carica papaya HOM05D003495 ORTHO05D004159 8.3e-43 179.1 145 66.9
CsaV3_5G038800 Cucumis sativus L. HOM05D003495 ORTHO05D004159 8.3e-43 179.1 145 65.5
PGR004G1253 Punica granatum HOM05D003495 ORTHO05D004159 8.3e-43 179.1 147 66.7
Sopen03g010670 Solanum pennellii HOM05D003495 ORTHO05D004159 8.3e-43 179.1 147 65.3
Oeu032840.1 Olea europaea HOM05D003495 ORTHO05D004159 1.1e-42 178.7 146 66.4
EL10Ac6g14290 Beta vulgaris HOM05D003495 ORTHO05D004159 1.4e-42 178.3 146 61.6
ECA232G2419 Erigeron canadensis HOM05D003495 ORTHO05D004159 1.4e-42 178.3 147 62.6
AUR62002798 Chenopodium quinoa HOM05D003495 ORTHO05D004159 3.2e-42 177.2 146 63.0
Lj4C126G12 Lonicera japonica HOM05D003495 ORTHO05D004159 3.2e-42 177.2 146 65.8
Atru.chr8.588 Acer truncatum HOM05D003495 ORTHO05D004159 4.1e-42 176.8 146 65.1
Oeu062191.1 Olea europaea HOM05D003495 ORTHO05D004159 5.4e-42 176.4 147 66.0
HanXRQChr15g0464911 Helianthus annuus HOM05D003495 ORTHO05D004159 7.0e-42 176.0 147 62.6
Hund25028 Selenicereus undatus HOM05D003495 ORTHO05D004159 7.0e-42 176.0 146 62.3
Solyc03g046450.3 Solanum lycopersicum HOM05D003495 ORTHO05D004159 7.0e-42 176.0 147 64.6
TWI60G0296 Tripterygium wilfordii HOM05D003495 ORTHO05D004159 9.2e-42 175.6 146 65.8
Actinidia18095 Actinidia chinensis HOM05D003495 ORTHO05D004159 1.6e-41 174.9 146 65.8
CAN.G563.4 Capsicum annuum HOM05D003495 ORTHO05D004159 2.0e-41 174.5 147 64.6
Haze_14358 Corylus avellana HOM05D003495 ORTHO05D004159 2.7e-41 174.1 143 65.0
AUR62014105 Chenopodium quinoa HOM05D003495 ORTHO05D004159 4.5e-41 173.3 146 61.6
Lsat_1_v5_gn_4_173921 Lactuca sativa HOM05D003495 ORTHO05D004159 4.5e-41 173.3 151 62.3
vmacro05603 Vaccinium macrocarpon HOM05D003495 ORTHO05D004159 4.5e-41 173.3 146 65.1
Sed0015478 Sechium edule HOM05D003495 ORTHO05D004159 7.8e-41 172.6 145 63.4
Cfa007716 Carpinus fangiana HOM05D003495 ORTHO05D004159 1.0e-40 172.2 143 64.3
Ah.02g128180 Amaranthus hybridus HOM05D003495 ORTHO05D004159 1.7e-40 171.4 146 61.0
HanXRQChr15g0489851 Helianthus annuus HOM05D003495 ORTHO05D004159 1.7e-40 171.4 147 61.2
Sed0005421 Sechium edule HOM05D003495 ORTHO05D004159 1.7e-40 171.4 145 64.1
Duzib268G1709 Durio zibethinus HOM05D003495 ORTHO05D004159 2.3e-40 171.0 145 63.4
Aqoxy5G03432 Aquilegia oxysepala HOM05D003495 ORTHO05D004159 3.9e-40 170.2 146 61.6
Eucgr.I02084 Eucalyptus grandis HOM05D003495 ORTHO05D004159 3.3e-39 167.2 146 62.3
Potri.017G106100 Populus trichocarpa HOM05D003495 ORTHO05D004159 5.6e-39 166.4 144 62.5
TAR622G0597 Trochodendron aralioides HOM05D003495 ORTHO05D004159 5.6e-39 166.4 146 62.3
BcaNung02199 Brassica carinata HOM05D003495 ORTHO05D004159 2.1e-38 164.5 146 61.0
A02p03170 Brassica napus HOM05D003495 ORTHO05D004159 2.1e-38 164.5 146 61.6
BraA02t05287Z Brassica rapa HOM05D003495 ORTHO05D004159 2.1e-38 164.5 146 61.6
Sc04g0005950 Simmondsia chinensis HOM05D003495 ORTHO05D004159 2.8e-38 164.1 147 61.2
C02p07920 Brassica napus HOM05D003495 ORTHO05D004159 6.1e-38 162.9 146 61.0
BolC2t06715H Brassica oleracea HOM05D003495 ORTHO05D004159 6.1e-38 162.9 146 61.0
BcaC03g18444 Brassica carinata HOM05D003495 ORTHO05D004159 1.4e-37 161.8 146 60.3
Sp6g28440 Schrenkiella parvula HOM05D003495 ORTHO05D004159 1.8e-37 161.4 149 59.7
CARHR197650 Cardamine hirsuta HOM05D003495 ORTHO05D004159 2.3e-37 161.0 149 59.1
AL6G26520 Arabidopsis lyrata HOM05D003495 ORTHO05D004159 3.1e-37 160.6 149 59.1
Aa31LG11G13890 Aethionema arabicum HOM05D003495 ORTHO05D004159 4.0e-37 160.2 144 59.0
AT5G15680 Arabidopsis thaliana HOM05D003495 ORTHO05D004159 5.2e-37 159.8 149 59.1
Gohir.A01G142600 Gossypium hirsutum HOM05D003495 ORTHO05D004159 6.8e-37 159.5 196 48.5
Carub.0006s1383 Capsella rubella HOM05D003495 ORTHO05D004159 1.2e-36 158.7 149 59.1
Gorai.002G166500 Gossypium raimondii HOM05D003495 ORTHO05D004159 2.0e-36 157.9 146 59.6
Thhalv10012410m.g Eutrema salsugineum HOM05D003495 ORTHO05D004159 3.4e-36 157.1 149 57.7
THA.LOC104802983 Tarenaya hassleriana HOM05D003495 ORTHO05D004159 3.4e-36 157.1 146 60.3
Gohir.D01G134500 Gossypium hirsutum HOM05D003495 ORTHO05D004159 7.5e-36 156.0 146 59.6
PSO063G7059 Papaver somniferum HOM05D003495 ORTHO05D004159 9.8e-36 155.6 155 56.8
unitig_748.g7269 Utricularia gibba HOM05D003495 ORTHO05D004159 3.7e-35 153.7 148 60.1
PSO063G5616 Papaver somniferum HOM05D003495 ORTHO05D004159 4.9e-35 153.3 146 59.6
THA.LOC104820987 Tarenaya hassleriana HOM05D003495 ORTHO05D004159 1.1e-34 152.1 145 58.6
C03p08360 Brassica napus HOM05D003495 ORTHO05D004159 1.9e-34 151.4 145 56.6
BolC3t13343H Brassica oleracea HOM05D003495 ORTHO05D004159 1.9e-34 151.4 145 56.6
BcaB01g05032 Brassica carinata HOM05D003495 ORTHO05D004159 7.0e-34 149.4 144 54.9
SEGI_22880 Sequoiadendron giganteum HOM05D003495 ORTHO05D004159 1.6e-33 148.3 147 56.5
BraA03t10052Z Brassica rapa HOM05D003495 ORTHO05D004159 2.7e-33 147.5 145 55.2
A03p07290 Brassica napus HOM05D003495 ORTHO05D004159 1.0e-32 145.6 145 54.5
Hund20735 Selenicereus undatus HOM05D003495 ORTHO05D004159 1.0e-32 145.6 146 52.1
Sopen02g027480 Solanum pennellii HOM05D012253 ORTHO05D015025 1.7e-32 144.8 260 31.2
HPP92_025565 Vanilla planifolia HOM05D003495 ORTHO05D004159 1.2e-28 132.1 149 49.7
Peaxi162Scf00475g00121 Petunia axillaris HOM05D012253 ORTHO05D015025 1.7e-27 128.3 256 32.8
Os02g0830900 Oryza sativa ssp. japonica HOM05D003495 ORTHO05D004159 2.2e-27 127.9 146 49.3
Peaxi162Scf01072g00049 Petunia axillaris HOM05D012253 ORTHO05D015025 2.9e-27 127.5 260 33.1
ATR0618G126 Amborella trichopoda HOM05D003495 ORTHO05D004159 3.7e-27 127.1 140 52.9
CDE04G3053 Ceratophyllum demersum HOM05D003495 ORTHO05D004159 4.1e-26 123.6 148 48.6
SHI33626 Sapria himalayana HOM05D003495 ORTHO05D004159 4.1e-26 123.6 138 49.3
Zm00001eb190620 Zea mays HOM05D003495 ORTHO05D004159 4.1e-26 123.6 148 48.0
Manes.04G051800 Manihot esculenta HOM05D012253 ORTHO05D015025 1.6e-25 121.7 222 34.2
SEGI_11817 Sequoiadendron giganteum HOM05D003495 ORTHO05D004159 6.6e-24 116.3 144 50.7
SMO351G0561 Selaginella moellendorffii HOM05D003495 ORTHO05D004159 1.5e-23 115.2 148 48.6
ECA238G4655 Erigeron canadensis HOM05D003495 ORTHO05D004159 3.3e-23 114.0 74 71.6
Solyc02g089390.3 Solanum lycopersicum HOM05D003495 ORTHO05D004159 4.3e-23 113.6 89 68.5
Manes.04G051700 Manihot esculenta HOM05D012253 ORTHO05D015025 7.3e-23 112.8 234 34.6
HanXRQChr14g0447961 Helianthus annuus HOM05D003495 ORTHO05D004159 2.1e-22 111.3 139 47.5
Mapoly0124s0011 Marchantia polymorpha HOM05D003495 ORTHO05D004159 2.1e-22 111.3 156 43.6
AagrBONN_evm.TU.Sc2ySwM_228.311 Anthoceros agrestis HOM05D003495 ORTHO05D004159 2.8e-22 110.9 150 45.3
Psat6g133600 Pisum sativum HOM05D003495 ORTHO05D004159 2.3e-21 107.8 102 58.8
Pp3c12_3160 Physcomitrium patens HOM05D003495 ORTHO05D004159 1.4e-18 98.6 74 62.2
Pp3c3_1860 Physcomitrium patens HOM05D003495 ORTHO05D004159 7.1e-18 96.3 107 45.8
Pp3c13_5370 Physcomitrium patens HOM05D003495 ORTHO05D004159 1.6e-17 95.1 106 45.3
CAN.G497.63 Capsicum annuum HOM05D003495 ORTHO05D004159 1.7e-16 91.7 64 75.0
Lsat_1_v5_gn_2_85980 Lactuca sativa HOM05D003495 ORTHO05D004159 8.6e-16 89.4 135 40.0
CAN.G497.64 Capsicum annuum HOM05D012253 ORTHO05D015025 1.4e-13 82.0 253 24.9
CBR_g31516 Chara braunii HOM05D003495 ORTHO05D004159 1.4e-10 72.0 72 43.1
Actinidia36279 Actinidia chinensis HOM05D003495 ORTHO05D004159 1.6e-09 68.6 52 67.3
DCAR_002645 Daucus carota HOM05D012253 ORTHO05D015025 3.0e-08 64.3 84 40.5
vmacro19785 Vaccinium macrocarpon HOM05D012909 ORTHO05D012446 3.0e-08 64.3 262 23.7
Os03g0608600 Oryza sativa ssp. japonica HOM05D012253 ORTHO05D012446 1.5e-07 62.0 261 23.8


User provided reference genes

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