Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G493.1 Capsicum annuum HOM05D003748 ORTHO05D004108 3.0e-35 151.4 79 100.0
CAN.G199.10 Capsicum annuum HOM05D003748 ORTHO05D004108 2.4e-21 105.1 77 74.0
Solyc06g065370.3 Solanum lycopersicum HOM05D003748 ORTHO05D004108 1.0e-19 99.8 75 69.3
Sopen06g023850 Solanum pennellii HOM05D003748 ORTHO05D004108 3.9e-19 97.8 75 66.7
PGSC0003DMG400026076 Solanum tuberosum HOM05D003748 ORTHO05D004108 3.9e-19 97.8 78 69.2
Peaxi162Scf00268g01130 Petunia axillaris HOM05D003748 ORTHO05D004108 5.1e-19 97.4 67 76.1
Nitab4.5_0000303g0140 Nicotiana tabacum HOM05D003748 ORTHO05D004108 2.8e-17 91.7 77 67.5
Cc10_g10370 Coffea canephora HOM05D003748 ORTHO05D004108 4.8e-17 90.9 77 62.3
Migut.N03349 Erythranthe guttata HOM05D003748 ORTHO05D004108 1.8e-16 89.0 68 69.1
Oeu039618.1 Olea europaea HOM05D003748 ORTHO05D004108 3.1e-16 88.2 67 70.1
MSTRG.22452 Avicennia marina HOM05D003748 ORTHO05D004108 4.0e-16 87.8 69 65.2
Peaxi162Scf00560g00736 Petunia axillaris HOM05D003748 ORTHO05D004108 4.0e-16 87.8 77 62.3
Oeu038195.1 Olea europaea HOM05D003748 ORTHO05D004108 5.3e-16 87.4 68 66.2
BcaC03g15314 Brassica carinata HOM05D003748 ORTHO05D004108 6.9e-16 87.0 76 57.9
A02p17590 Brassica napus HOM05D003748 ORTHO05D004108 6.9e-16 87.0 77 57.1
C02p29240 Brassica napus HOM05D003748 ORTHO05D004108 6.9e-16 87.0 76 57.9
BolC2t08974H Brassica oleracea HOM05D003748 ORTHO05D004108 6.9e-16 87.0 76 57.9
BraA02t06805Z Brassica rapa HOM05D003748 ORTHO05D004108 6.9e-16 87.0 77 57.1
unitig_61.g26074 Utricularia gibba HOM05D003748 ORTHO05D004108 9.0e-16 86.7 69 65.2
Thhalv10019318m.g Eutrema salsugineum HOM05D003748 ORTHO05D004108 2.6e-15 85.1 77 55.8
BcaB05g24695 Brassica carinata HOM05D003748 ORTHO05D004108 4.5e-15 84.3 77 55.8
Dinv03390 Davidia involucrata HOM05D003748 ORTHO05D004108 5.8e-15 84.0 77 58.4
PGSC0003DMG400000891 Solanum tuberosum HOM05D003748 ORTHO05D004108 5.8e-15 84.0 77 61.0
THA.LOC104809742 Tarenaya hassleriana HOM05D003748 ORTHO05D004108 5.8e-15 84.0 77 54.5
Nitab4.5_0000807g0010 Nicotiana tabacum HOM05D003748 ORTHO05D004108 7.6e-15 83.6 68 64.7
THA.LOC104800113 Tarenaya hassleriana HOM05D003748 ORTHO05D004108 7.6e-15 83.6 77 55.8
SalBow6G2274 Salvia bowleyana HOM05D003748 ORTHO05D004108 9.9e-15 83.2 68 61.8
DCAR_014361 Daucus carota HOM05D003748 ORTHO05D004108 2.2e-14 82.0 75 56.0
Nitab4.5_0002500g0020 Nicotiana tabacum HOM05D003748 ORTHO05D004108 2.2e-14 82.0 91 57.1
AL2G31560 Arabidopsis lyrata HOM05D003748 ORTHO05D004108 2.9e-14 81.6 79 55.7
Rhsim06G0096300 Rhododendron simsii HOM05D003748 ORTHO05D004108 2.9e-14 81.6 68 57.4
TWI74G0020 Tripterygium wilfordii HOM05D003748 ORTHO05D004108 2.9e-14 81.6 67 61.2
AT1G71950 Arabidopsis thaliana HOM05D003748 ORTHO05D004108 3.8e-14 81.3 68 60.3
BcaB03g14916 Brassica carinata HOM05D003748 ORTHO05D004108 3.8e-14 81.3 77 50.6
Sp5g27020 Schrenkiella parvula HOM05D003748 ORTHO05D004108 3.8e-14 81.3 71 57.7
A07p38120 Brassica napus HOM05D003748 ORTHO05D004108 4.9e-14 80.9 77 50.6
RcHm_v2.0_Chr2g0129441 Rosa chinensis HOM05D003748 ORTHO05D004108 4.9e-14 80.9 76 55.3
CSS0008856 Camellia sinensis var. sinensis HOM05D003748 ORTHO05D004108 6.4e-14 80.5 68 57.4
Carub.0002s1873 Capsella rubella HOM05D003748 ORTHO05D004108 6.4e-14 80.5 68 58.8
Thecc.08G183900 Theobroma cacao HOM05D003748 ORTHO05D004108 6.4e-14 80.5 66 63.6
Aa31LG4G8670 Aethionema arabicum HOM05D003748 ORTHO05D004108 8.4e-14 80.1 77 49.4
BraA07t31377Z Brassica rapa HOM05D003748 ORTHO05D004108 8.4e-14 80.1 77 50.6
Duzib177G0476 Durio zibethinus HOM05D003748 ORTHO05D004108 8.4e-14 80.1 68 61.8
Hma1.2p1_0342F.1_g130730 Hydrangea macrophylla HOM05D003748 ORTHO05D004108 8.4e-14 80.1 77 59.7
Sopen11g009560 Solanum pennellii HOM05D003748 ORTHO05D004108 8.4e-14 80.1 67 62.7
Actinidia02577 Actinidia chinensis HOM05D003748 ORTHO05D004108 1.1e-13 79.7 68 57.4
SGA_v2.0_scaffold25G11069 Striga asiatica HOM05D003748 ORTHO05D004108 1.4e-13 79.3 75 58.7
FvH4_6g27290 Fragaria vesca HOM05D003748 ORTHO05D004108 1.9e-13 79.0 82 53.7
FAN09G3472 Fragaria x ananassa HOM05D003748 ORTHO05D004108 1.9e-13 79.0 82 53.7
Nn5g27683 Nelumbo nucifera HOM05D003748 ORTHO05D004108 1.9e-13 79.0 68 61.8
BcaC08g46636 Brassica carinata HOM05D003748 ORTHO05D004108 2.4e-13 78.6 77 49.4
C06p46040 Brassica napus HOM05D003748 ORTHO05D004108 2.4e-13 78.6 77 49.4
BolC6t39656H Brassica oleracea HOM05D003748 ORTHO05D004108 2.4e-13 78.6 77 49.4
TWI53G0775 Tripterygium wilfordii HOM05D003748 ORTHO05D004108 2.4e-13 78.6 67 59.7
FAN02G1714 Fragaria x ananassa HOM05D001133 ORTHO05D004108 4.2e-13 77.8 81 53.1
FAN05G3939 Fragaria x ananassa HOM05D003748 ORTHO05D004108 4.2e-13 77.8 82 52.4
Gohir.A13G121200 Gossypium hirsutum HOM05D003748 ORTHO05D004108 4.2e-13 77.8 67 58.2
Gorai.013G140200 Gossypium raimondii HOM05D003748 ORTHO05D004108 4.2e-13 77.8 67 58.2
FAN14G5726 Fragaria x ananassa HOM05D003748 ORTHO05D004108 7.1e-13 77.0 82 52.4
Lj7A290T41 Lonicera japonica HOM05D003748 ORTHO05D004108 7.1e-13 77.0 68 54.4
Lj5g0010218 Lotus japonicus HOM05D003748 ORTHO05D004108 9.3e-13 76.6 64 59.4
Psat6g091520 Pisum sativum HOM05D003748 ORTHO05D004108 9.3e-13 76.6 75 50.7
TPR.G22711 Trifolium pratense HOM05D003748 ORTHO05D004108 9.3e-13 76.6 64 57.8
TAR381G1195 Trochodendron aralioides HOM05D003748 ORTHO05D004108 9.3e-13 76.6 66 57.6
vmacro12490 Vaccinium macrocarpon HOM05D003748 ORTHO05D004108 9.3e-13 76.6 67 55.2
arahy.Tifrunner.gnm1.ann1.W37VG6 Arachis hypogaea HOM05D003748 ORTHO05D004108 1.2e-12 76.3 66 59.1
COL.COLO4_04234 Corchorus olitorius HOM05D003748 ORTHO05D004108 1.2e-12 76.3 64 62.5
Dinv41714 Davidia involucrata HOM05D003748 ORTHO05D004108 1.2e-12 76.3 66 59.1
Glyma.02G158200 Glycine max HOM05D003748 ORTHO05D004108 1.2e-12 76.3 65 58.5
Manes.18G101100 Manihot esculenta HOM05D003748 ORTHO05D004108 1.2e-12 76.3 75 56.0
Oeu021207.1 Olea europaea HOM05D003748 ORTHO05D004108 1.2e-12 76.3 67 62.7
Solyc11g018590.1 Solanum lycopersicum HOM05D003748 ORTHO05D004108 1.2e-12 76.3 67 58.2
VMungo0720G2071 Vigna mungo HOM05D003748 ORTHO05D004108 1.2e-12 76.3 64 57.8
arahy.Tifrunner.gnm1.ann1.2U5UH6 Arachis hypogaea HOM05D003748 ORTHO05D004108 1.6e-12 75.9 66 57.6
CANSAT64G1217 Cannabis sativa HOM05D003748 ORTHO05D004108 1.6e-12 75.9 68 55.9
Lalb_Chr01g0010201 Lupinus albus HOM05D003748 ORTHO05D004108 1.6e-12 75.9 64 60.9
MBI16_g07669_MAGBIO Magnolia biondii HOM05D003748 ORTHO05D004108 1.6e-12 75.9 64 56.2
HanXRQChr09g0260341 Helianthus annuus HOM05D003748 ORTHO05D004108 2.1e-12 75.5 66 56.1
Sed0001630 Sechium edule HOM05D003748 ORTHO05D004108 2.1e-12 75.5 64 57.8
BcaC08g46634 Brassica carinata HOM05D003748 ORTHO05D004108 2.7e-12 75.1 71 49.3
Sabra13G0095600 Salix brachista HOM05D003748 ORTHO05D004108 2.7e-12 75.1 63 61.9
Ca_02751_v3 Cicer arietinum L. HOM05D003748 ORTHO05D004108 3.5e-12 74.7 75 50.7
MD05G1041700 Malus domestica HOM05D003748 ORTHO05D004108 3.5e-12 74.7 67 56.7
MD10G1048200 Malus domestica HOM05D003748 ORTHO05D004108 3.5e-12 74.7 67 56.7
Phvul.007G245700 Phaseolus vulgaris HOM05D003748 ORTHO05D004108 3.5e-12 74.7 64 57.8
Potri.013G112800 Populus trichocarpa HOM05D003748 ORTHO05D004108 3.5e-12 74.7 74 58.1
Cpa.g.sc66.42 Carica papaya HOM05D003748 ORTHO05D004108 4.6e-12 74.3 77 49.4
CsaV3_7G024420 Cucumis sativus L. HOM05D003748 ORTHO05D004108 4.6e-12 74.3 69 52.2
Gohir.D13G125300 Gossypium hirsutum HOM05D003748 ORTHO05D004108 4.6e-12 74.3 67 56.7
CDE08G0273 Ceratophyllum demersum HOM05D003748 ORTHO05D004108 6.0e-12 73.9 66 60.6
Prupe.8G057500 Prunus persica HOM05D003748 ORTHO05D004108 6.0e-12 73.9 67 58.2
SGA_v2.0_scaffold149G36586 Striga asiatica HOM05D003748 ORTHO05D004108 6.0e-12 73.9 68 54.4
GSVIVG01012792001 Vitis vinifera HOM05D003748 ORTHO05D004108 6.0e-12 73.9 66 56.1
Atru.chr13.1761_Atru.chr13.1772 Acer truncatum HOM05D003748 ORTHO05D004108 7.9e-12 73.6 77 46.8
CDE06G2501 Ceratophyllum demersum HOM05D003748 ORTHO05D004108 7.9e-12 73.6 66 60.6
MD11G1194700 Malus domestica HOM05D003748 ORTHO05D004108 7.9e-12 73.6 66 54.5
Medtr1g050640 Medicago truncatula HOM05D003748 ORTHO05D004108 7.9e-12 73.6 64 56.2
CARHR064760 Cardamine hirsuta HOM05D003748 ORTHO05D004108 1.0e-11 73.2 65 56.9
ClCG09G010270 Citrullus lanatus HOM05D003748 ORTHO05D004108 1.0e-11 73.2 69 52.2
Manes.02G192300 Manihot esculenta HOM05D003748 ORTHO05D004108 1.0e-11 73.2 68 55.9
Potri.019G083300 Populus trichocarpa HOM05D003748 ORTHO05D004108 1.0e-11 73.2 73 52.1
ClCG09G010620 Citrullus lanatus HOM05D003748 ORTHO05D004108 1.3e-11 72.8 64 53.1
MBI09_g01930_MAGBIO Magnolia biondii HOM05D003748 ORTHO05D004108 1.3e-11 72.8 67 55.2
SEGI_17758 Sequoiadendron giganteum HOM05D003748 ORTHO05D004108 1.3e-11 72.8 67 56.7
ClCG11G008120 Citrullus lanatus HOM05D003748 ORTHO05D004108 1.8e-11 72.4 64 56.2
Sed0020042 Sechium edule HOM05D003748 ORTHO05D004108 2.3e-11 72.0 64 54.7
ATR0584G219 Amborella trichopoda HOM05D003748 ORTHO05D004108 3.0e-11 71.6 68 57.4
Eucgr.F02610 Eucalyptus grandis HOM05D003748 ORTHO05D004108 3.0e-11 71.6 68 54.4
HanXRQChr05g0150261 Helianthus annuus HOM05D003748 ORTHO05D004108 3.0e-11 71.6 73 52.1
HPP92_003143 Vanilla planifolia HOM05D003748 ORTHO05D004108 3.0e-11 71.6 66 53.0
HPP92_003146 Vanilla planifolia HOM05D003748 ORTHO05D004108 3.0e-11 71.6 66 53.0
CiPaw.07G159900 Carya illinoinensis HOM05D003748 ORTHO05D004108 3.9e-11 71.2 68 54.4
Lsat_1_v5_gn_6_110641 Lactuca sativa HOM05D003748 ORTHO05D004108 3.9e-11 71.2 75 53.3
QL02p033706 Quercus lobata HOM05D003748 ORTHO05D004108 3.9e-11 71.2 69 56.5
MELO3C024124.2 Cucumis melo HOM05D003748 ORTHO05D004108 5.1e-11 70.9 64 51.6
PSO017G4343 Papaver somniferum HOM05D003748 ORTHO05D004108 5.1e-11 70.9 67 50.7
PSO063G2175 Papaver somniferum HOM05D003748 ORTHO05D004108 5.1e-11 70.9 67 50.7
HPP92_000073 Vanilla planifolia HOM05D003748 ORTHO05D004108 5.1e-11 70.9 64 57.8
Ciclev10002870m.g Citrus clementina HOM05D003748 ORTHO05D004108 6.7e-11 70.5 67 52.2
HanXRQChr05g0150061 Helianthus annuus HOM05D003748 ORTHO05D004108 6.7e-11 70.5 67 55.2
MELO3C028637.2 Cucumis melo HOM05D003748 ORTHO05D004108 8.7e-11 70.1 70 50.0
MELO3C008123.2 Cucumis melo HOM05D003748 ORTHO05D004108 1.1e-10 69.7 64 54.7
Os05g0432700 Oryza sativa ssp. japonica HOM05D003748 ORTHO05D004108 1.5e-10 69.3 67 53.7
Sabra11G0052500 Salix brachista HOM05D003748 ORTHO05D004108 1.5e-10 69.3 76 51.3
MELO3C023644.2 Cucumis melo HOM05D003748 ORTHO05D004108 1.9e-10 68.9 64 53.1
ECA232G2068 Erigeron canadensis HOM05D003748 ORTHO05D004108 1.9e-10 68.9 66 48.5
arahy.Tifrunner.gnm1.ann1.14DQKS Arachis hypogaea HOM05D003748 ORTHO05D004108 2.5e-10 68.6 66 53.0
arahy.Tifrunner.gnm1.ann1.V86M3D Arachis hypogaea HOM05D003748 ORTHO05D004108 2.5e-10 68.6 66 53.0
Sabra15G0067400 Salix brachista HOM05D003748 ORTHO05D004108 2.5e-10 68.6 75 50.7
Cfa013847 Carpinus fangiana HOM05D003748 ORTHO05D004108 3.3e-10 68.2 75 50.7
MELO3C008122.2 Cucumis melo HOM05D001651 ORTHO05D004108 3.3e-10 68.2 64 54.7
CsaV3_2G033500 Cucumis sativus L. HOM05D003748 ORTHO05D004108 3.3e-10 68.2 64 54.7
Aqoxy5G02591 Aquilegia oxysepala HOM05D003748 ORTHO05D004108 4.3e-10 67.8 66 51.5
Sabra10G0094400 Salix brachista HOM05D003748 ORTHO05D004108 4.3e-10 67.8 68 51.5
Haze_22521 Corylus avellana HOM05D003748 ORTHO05D004108 5.6e-10 67.4 74 50.0
ATR0620G025 Amborella trichopoda HOM05D003748 ORTHO05D004108 7.4e-10 67.0 69 49.3
ECA246G4702 Erigeron canadensis HOM05D003748 ORTHO05D004108 9.6e-10 66.6 66 53.0
Zm00001eb289210 Zea mays HOM05D003748 ORTHO05D004108 9.6e-10 66.6 67 47.8
Sed0006671 Sechium edule HOM05D003748 ORTHO05D004108 2.1e-09 65.5 62 51.6
Sabra19G0072000 Salix brachista HOM05D003748 ORTHO05D004108 3.7e-09 64.7 75 48.0
Sc23g0001260 Simmondsia chinensis HOM05D003748 ORTHO05D004108 4.8e-09 64.3 77 46.8
HPP92_001081 Vanilla planifolia HOM05D003748 ORTHO05D004108 4.8e-09 64.3 67 49.3
CsaV3_7G024410 Cucumis sativus L. HOM05D003748 ORTHO05D004108 6.2e-09 63.9 77 44.2
Lalb_Chr19g0129441 Lupinus albus HOM05D003748 ORTHO05D004108 6.2e-09 63.9 64 54.7
Lalb_Chr19g0129451 Lupinus albus HOM05D003748 ORTHO05D004108 6.2e-09 63.9 64 50.0
HPP92_025042 Vanilla planifolia HOM05D003748 ORTHO05D004108 6.2e-09 63.9 76 47.4
Hund16797 Selenicereus undatus HOM05D003748 ORTHO05D004108 1.1e-08 63.2 75 50.7
PGR042G3867 Punica granatum HOM05D003748 ORTHO05D004108 1.4e-08 62.8 68 48.5
Sabra11G0051700 Salix brachista HOM05D000022 ORTHO05D000071 1.4e-08 62.8 75 48.0
CSS0005693 Camellia sinensis var. sinensis HOM05D003748 ORTHO05D004108 1.8e-08 62.4 83 43.4
Sabra15G0037700 Salix brachista HOM05D003748 ORTHO05D004108 2.4e-08 62.0 76 44.7
CANSAT56G2356 Cannabis sativa HOM05D003748 ORTHO05D004108 3.1e-08 61.6 67 47.8
AUR62004641 Chenopodium quinoa HOM05D003748 ORTHO05D004108 3.1e-08 61.6 66 51.5
AUR62022695 Chenopodium quinoa HOM05D003748 ORTHO05D004108 3.1e-08 61.6 66 51.5
Sabra11G0049800 Salix brachista HOM05D003748 ORTHO05D004108 9.0e-08 60.1 80 45.0
FvH4_6g27310 Fragaria vesca HOM05D003748 ORTHO05D004108 1.2e-07 59.7 67 50.7
FAN14G4728 Fragaria x ananassa HOM05D003748 ORTHO05D004108 1.2e-07 59.7 67 50.7
FAN02G3522 Fragaria x ananassa HOM05D003748 ORTHO05D004108 1.5e-07 59.3 67 50.7
Ah.05g178170 Amaranthus hybridus HOM05D003748 ORTHO05D004108 4.5e-07 57.8 68 47.1
EL10Ac1g00087 Beta vulgaris HOM05D003748 ORTHO05D004108 5.8e-07 57.4 64 46.9
FAN09G2657 Fragaria x ananassa HOM05D003748 ORTHO05D004108 5.8e-07 57.4 67 49.3
Sabra16G0264300 Salix brachista HOM05D003748 ORTHO05D004108 7.6e-07 57.0 67 50.7
Ciclev10007132m.g Citrus clementina HOM05D003748 ORTHO05D004108 1.3e-06 56.2 61 45.9
MBI09_g40923_MAGBIO Magnolia biondii HOM05D003748 ORTHO05D004108 1.3e-06 56.2 67 46.3
HPP92_006842 Vanilla planifolia HOM05D003748 ORTHO05D004108 3.8e-06 54.7 66 45.5
CsaV3_7G023810 Cucumis sativus L. HOM05D003748 ORTHO05D004108 4.9e-06 54.3 95 35.8
Mapoly0036s0083 Marchantia polymorpha HOM05D003748 ORTHO05D004108 4.9e-06 54.3 68 50.0
Ca_18001_v3 Cicer arietinum L. HOM05D000015 ORTHO05D001173 6.4e-06 53.9 73 41.1


User provided reference genes

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