Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G492.69 Capsicum annuum HOM05D005971 ORTHO05D007459 0.0e+00 2050.4 1018 100.0
Sopen10g001570 Solanum pennellii HOM05D005971 ORTHO05D007459 0.0e+00 1781.1 1013 86.9
Nitab4.5_0000611g0060 Nicotiana tabacum HOM05D005971 ORTHO05D007459 0.0e+00 1604.7 981 82.0
Solyc10g005600.4 Solanum lycopersicum HOM05D005971 ORTHO05D007459 0.0e+00 1592.8 1013 80.0
Nitab4.5_0004488g0030 Nicotiana tabacum HOM05D005971 ORTHO05D007459 0.0e+00 1539.2 1001 77.6
Peaxi162Scf00267g01016 Petunia axillaris HOM05D005971 ORTHO05D007459 0.0e+00 1538.9 1007 75.6
Dinv19623 Davidia involucrata HOM05D005971 ORTHO05D007459 0.0e+00 1212.2 1014 59.3
Cc05_g16010 Coffea canephora HOM05D005971 ORTHO05D007459 0.0e+00 1097.0 1002 55.6
Actinidia35435 Actinidia chinensis HOM05D005971 ORTHO05D007459 0.0e+00 1087.8 1014 54.5
CSS0033662 Camellia sinensis var. sinensis HOM05D005971 ORTHO05D007459 1.5e-309 1066.2 981 54.8
Lj1C905G3 Lonicera japonica HOM05D005971 ORTHO05D007459 3.4e-309 1065.1 1015 52.9
CSS0049989 Camellia sinensis var. sinensis HOM05D005971 ORTHO05D007459 1.0e-305 1053.5 981 54.6
PGSC0003DMG402011239 Solanum tuberosum HOM05D005971 ORTHO05D007459 4.0e-302 1041.6 573 89.9
TAR626G0017 Trochodendron aralioides HOM05D005971 ORTHO05D007459 5.3e-302 1041.2 1024 51.6
Migut.M01561 Erythranthe guttata HOM05D005971 ORTHO05D007459 5.8e-301 1037.7 1019 52.2
Oeu052011.1 Olea europaea HOM05D005971 ORTHO05D007459 2.1e-298 1029.2 1014 52.6
Potri.001G457550 Populus trichocarpa HOM05D005971 ORTHO05D007459 5.7e-296 1021.1 1001 50.7
SGA_v2.0_scaffold7G03577 Striga asiatica HOM05D005971 ORTHO05D007459 4.1e-294 1015.0 1001 51.0
Atru.chr12.2184 Acer truncatum HOM05D005971 ORTHO05D007459 2.2e-292 1009.2 1008 50.7
Cfa019419 Carpinus fangiana HOM05D005971 ORTHO05D007459 2.3e-289 999.2 1013 50.5
Sabra16G0310100 Salix brachista HOM05D005971 ORTHO05D007459 3.9e-289 998.4 1023 49.7
MD05G1219300 Malus domestica HOM05D005971 ORTHO05D007459 5.7e-288 994.6 1017 50.9
QL04p073974 Quercus lobata HOM05D005971 ORTHO05D007459 1.3e-287 993.4 1051 50.0
Ciclev10018677m.g Citrus clementina HOM05D005971 ORTHO05D007459 1.1e-283 980.3 1012 49.9
FvH4_3g15860 Fragaria vesca HOM05D005971 ORTHO05D007459 2.2e-276 956.1 1014 47.7
FAN11G3334 Fragaria x ananassa HOM05D005971 ORTHO05D007459 6.5e-276 954.5 1014 47.9
FAN16G0465 Fragaria x ananassa HOM05D005971 ORTHO05D007459 1.1e-270 937.2 1014 47.7
RcHm_v2.0_Chr5g0026671 Rosa chinensis HOM05D005971 ORTHO05D007459 1.8e-270 936.4 1005 47.9
CANSAT80G2256 Cannabis sativa HOM05D005971 ORTHO05D007459 1.5e-264 916.8 1018 47.2
SalBow8G3201 Salvia bowleyana HOM05D005971 ORTHO05D007459 8.2e-263 911.0 992 47.3
vmacro09786 Vaccinium macrocarpon HOM05D005971 ORTHO05D007459 1.8e-262 909.8 1015 46.8
Rhsim04G0005800 Rhododendron simsii HOM05D005971 ORTHO05D007459 4.5e-261 905.2 1145 43.8
Duzib268G0338 Durio zibethinus HOM05D005971 ORTHO05D007459 1.7e-260 903.3 1016 47.9
TWI39G0032 Tripterygium wilfordii HOM05D005971 ORTHO05D007459 1.1e-259 900.6 1020 47.0
ECA240G1928 Erigeron canadensis HOM05D005971 ORTHO05D007459 3.2e-259 899.0 1003 47.3
Gorai.013G178300 Gossypium raimondii HOM05D005971 ORTHO05D007459 3.6e-258 895.6 1014 47.4
PGR031G0315 Punica granatum HOM05D005971 ORTHO05D007459 5.7e-256 888.3 1010 46.6
PSO675G3107 Papaver somniferum HOM05D005971 ORTHO05D007459 4.8e-255 885.2 1014 45.1
Glyma.15G255000 Glycine max HOM05D005971 ORTHO05D007459 1.4e-254 883.6 1014 45.5
Lsat_1_v5_gn_7_71401 Lactuca sativa HOM05D005971 ORTHO05D007459 2.0e-253 879.8 1025 47.0
PSO017G5934 Papaver somniferum HOM05D005971 ORTHO05D007459 2.2e-252 876.3 1014 45.1
Ah.06g185720 Amaranthus hybridus HOM05D005971 ORTHO05D007459 5.0e-252 875.2 1020 43.1
EL10Ac2g03354 Beta vulgaris HOM05D005971 ORTHO05D007459 1.5e-251 873.6 1006 44.1
DCAR_009638 Daucus carota HOM05D005971 ORTHO05D007459 1.5e-251 873.6 968 47.1
Carub.0001s0356 Capsella rubella HOM05D005971 ORTHO05D007459 1.0e-249 867.5 1012 45.4
THA.LOC104822751 Tarenaya hassleriana HOM05D005971 ORTHO05D007459 3.0e-249 865.9 993 45.4
Aa31LG1G20480 Aethionema arabicum HOM05D005971 ORTHO05D007459 8.8e-249 864.4 1012 43.9
TPR.G9756 Trifolium pratense HOM05D005971 ORTHO05D007459 9.8e-248 860.9 1027 44.5
arahy.Tifrunner.gnm1.ann1.MUD8D6 Arachis hypogaea HOM05D005971 ORTHO05D007459 1.7e-247 860.1 1019 44.3
Medtr2g069560 Medicago truncatula HOM05D005971 ORTHO05D007459 1.7e-247 860.1 1019 44.5
Lalb_Chr25g0285011 Lupinus albus HOM05D005971 ORTHO05D007459 4.9e-247 858.6 1013 44.9
AL1G14000 Arabidopsis lyrata HOM05D005971 ORTHO05D007459 8.3e-247 857.8 1017 44.0
AT1G04390 Arabidopsis thaliana HOM05D005971 ORTHO05D007459 1.6e-245 853.6 1012 43.7
ClCG11G016380 Citrullus lanatus HOM05D005971 ORTHO05D007459 2.0e-245 853.2 997 45.0
Phvul.005G056400 Phaseolus vulgaris HOM05D005971 ORTHO05D007459 5.9e-245 851.7 1021 44.3
HanXRQChr05g0160991 Helianthus annuus HOM05D005971 ORTHO05D007459 1.0e-244 850.9 1007 45.2
Psat1g011400 Pisum sativum HOM05D005971 ORTHO05D007459 3.6e-242 842.4 1022 43.7
CsaV3_4G031820 Cucumis sativus L. HOM05D005971 ORTHO05D007459 8.0e-242 841.3 998 44.6
Lj3g0007743 Lotus japonicus HOM05D005971 ORTHO05D007459 2.6e-240 836.3 1019 43.4
Ca_03684_v3 Cicer arietinum L. HOM05D005971 ORTHO05D007459 7.5e-240 834.7 1014 44.3
Prupe.4G140600 Prunus persica HOM05D005971 ORTHO05D007459 1.6e-237 827.0 934 46.6
A10p02830 Brassica napus HOM05D005971 ORTHO05D007459 3.9e-236 822.4 1012 43.1
Manes.14G015836 Manihot esculenta HOM05D005971 ORTHO05D007459 8.6e-236 821.2 840 48.7
BolC5t29039H Brassica oleracea HOM05D005971 ORTHO05D007459 1.5e-235 820.5 1012 42.6
C05p02580 Brassica napus HOM05D005971 ORTHO05D007459 9.5e-235 817.8 1012 42.6
Aqoxy2G04113 Aquilegia oxysepala HOM05D005971 ORTHO05D007459 3.1e-233 812.8 1025 43.7
GSVIVG01020430001 Vitis vinifera HOM05D005971 ORTHO05D007459 4.7e-226 788.9 928 44.9
PGSC0003DMG401011239 Solanum tuberosum HOM05D005971 ORTHO05D007459 1.7e-223 780.4 439 87.7
Sed0013026 Sechium edule HOM05D005971 ORTHO05D007459 1.2e-221 774.2 919 45.0
Atru.chr12.2179 Acer truncatum HOM05D005971 ORTHO05D007459 1.7e-215 753.8 750 51.1
Hund12466 Selenicereus undatus HOM05D005971 ORTHO05D007459 5.1e-212 742.3 883 43.7
AUR62038398 Chenopodium quinoa HOM05D005971 ORTHO05D007459 2.4e-209 733.4 1021 39.3
GSVIVG01020427001 Vitis vinifera HOM05D005971 ORTHO05D007459 1.4e-206 724.2 926 42.8
FAN21G1476 Fragaria x ananassa HOM05D005971 ORTHO05D007459 1.0e-204 718.0 1004 40.1
Nn7g37820 Nelumbo nucifera HOM05D005971 ORTHO05D007459 3.9e-204 716.1 833 45.0
Thecc.07G154200 Theobroma cacao HOM05D005971 ORTHO05D007459 1.5e-203 714.1 819 47.5
BraA10t42550Z Brassica rapa HOM05D005971 ORTHO05D007459 1.1e-198 698.0 1012 38.1
Hma1.2p1_0637F.1_g193590 Hydrangea macrophylla HOM05D005971 ORTHO05D007459 1.4e-198 697.6 1077 40.4
Thhalv10006788m.g Eutrema salsugineum HOM05D005971 ORTHO05D007459 3.6e-194 682.9 1012 37.9
Sc06g0001560 Simmondsia chinensis HOM05D005971 ORTHO05D007459 1.1e-193 681.4 742 46.6
MBI02_g40085_MAGBIO Magnolia biondii HOM05D005971 ORTHO05D007459 5.6e-187 659.1 857 42.2
Eucgr.F03182 Eucalyptus grandis HOM05D005971 ORTHO05D007459 2.0e-184 650.6 752 47.2
VMungo1080G0173 Vigna mungo HOM05D005971 ORTHO05D007459 9.3e-182 641.7 831 42.5
CARHR003720 Cardamine hirsuta HOM05D005971 ORTHO05D007459 3.9e-172 609.8 718 44.6
MELO3C010564.2 Cucumis melo HOM05D005971 ORTHO05D007459 8.7e-172 608.6 998 36.6
Sp1g03210 Schrenkiella parvula HOM05D005971 ORTHO05D007459 2.8e-170 603.6 715 43.5
ATR0165G004 Amborella trichopoda HOM05D005971 ORTHO05D007459 6.1e-165 585.9 1022 36.4
Cpa.g.sc10.37 Carica papaya HOM05D005971 ORTHO05D007459 1.1e-158 565.1 792 41.5
Gohir.D13G157500 Gossypium hirsutum HOM05D005971 ORTHO05D007459 8.0e-141 505.8 578 47.2
Zm00001eb273960 Zea mays HOM05D005971 ORTHO05D007459 2.3e-127 461.1 903 33.4
CDE12G0091 Ceratophyllum demersum HOM05D005971 ORTHO05D007459 5.0e-127 459.9 755 36.3
Peaxi162Scf01123g00003 Petunia axillaris HOM05D005971 ORTHO05D007459 4.6e-112 410.2 436 53.7
Gohir.A13G153066 Gossypium hirsutum HOM05D005971 ORTHO05D007459 3.9e-111 407.1 422 48.6
Peaxi162Scf00095g00013 Petunia axillaris HOM05D005971 ORTHO05D007459 2.7e-104 384.4 256 73.8
Peaxi162Scf01123g00008 Petunia axillaris HOM05D005971 ORTHO05D007459 1.5e-102 378.6 235 80.0
Gohir.A13G153099 Gossypium hirsutum HOM05D005971 ORTHO05D007459 1.2e-96 359.0 496 43.3
unitig_26.g10082 Utricularia gibba HOM05D005971 ORTHO05D007459 6.0e-96 356.7 1005 28.2
FAN25G3291 Fragaria x ananassa HOM05D005971 ORTHO05D007459 1.6e-85 322.0 375 45.9
Pp3c6_21780 Physcomitrium patens HOM05D005971 ORTHO05D007459 1.2e-83 315.8 1065 25.0
Mapoly0060s0028 Marchantia polymorpha HOM05D005971 ORTHO05D007459 9.9e-75 286.2 997 25.9
HPP92_026349 Vanilla planifolia HOM05D005971 ORTHO05D007459 1.2e-72 279.3 535 34.6
Cpa.g.sc10.38 Carica papaya HOM05D005971 ORTHO05D007459 5.5e-57 227.3 210 49.5
HPP92_026348 Vanilla planifolia HOM05D005971 ORTHO05D007459 7.2e-57 226.9 311 36.0
Os06g0674800 Oryza sativa ssp. japonica HOM05D005971 ORTHO05D007459 9.4e-57 226.5 430 31.2
Atru.chr12.2180 Acer truncatum HOM05D005971 ORTHO05D007459 6.7e-55 220.3 223 49.8
Nn7g37821 Nelumbo nucifera HOM05D005971 ORTHO05D007459 4.8e-53 214.2 191 50.8
CARHR003730 Cardamine hirsuta HOM05D005971 ORTHO05D007459 6.1e-48 197.2 231 43.3
Haze_08564 Corylus avellana HOM05D005971 ORTHO05D000006 3.7e-45 188.0 143 60.8
GSVIVG01020426001 Vitis vinifera HOM05D005971 ORTHO05D007459 1.5e-43 182.6 174 48.9
Gohir.D13G157600 Gossypium hirsutum HOM05D005971 ORTHO05D007459 3.2e-41 174.9 191 46.1
arahy.Tifrunner.gnm1.ann1.Q40ZT9 Arachis hypogaea HOM05D005971 ORTHO05D007459 1.8e-39 169.1 145 51.7
VMungo1080G1570 Vigna mungo HOM05D005971 ORTHO05D007459 2.6e-38 165.2 140 53.6
GSVIVG01020425001 Vitis vinifera HOM05D005971 ORTHO05D007459 3.5e-27 128.3 142 45.1
Glyma.13G098800 Glycine max HOM05D005971 ORTHO05D007459 1.0e-26 126.7 148 45.3
Glyma.13G358366 Glycine max HOM05D005971 ORTHO05D007459 3.8e-26 124.8 148 45.3
Zm00001eb395680 Zea mays HOM05D005971 ORTHO05D007459 6.5e-26 124.0 263 31.2
C03p00610 Brassica napus HOM05D005971 ORTHO05D040551 3.6e-24 118.2 155 38.1
COL.COLO4_20820 Corchorus olitorius HOM05D005971 ORTHO05D007459 6.1e-24 117.5 115 51.3
Glyma.08G171633 Glycine max HOM05D005971 ORTHO05D007459 4.4e-22 111.3 92 54.3
CAN.G1199.4 Capsicum annuum HOM05D002053 ORTHO05D007459 1.7e-18 99.4 118 46.6
Glyma.13G358300 Glycine max HOM05D005971 ORTHO05D007459 1.5e-17 96.3 167 39.5
Sc06g0001570 Simmondsia chinensis HOM05D005971 ORTHO05D007459 4.2e-17 94.7 94 46.8
BolC3t12626H Brassica oleracea HOM05D005971 ORTHO05D040551 1.3e-13 83.2 155 30.3
CDE12G0613 Ceratophyllum demersum HOM05D005971 ORTHO05D007459 4.9e-13 81.3 95 40.0
Glyma.13G052600 Glycine max HOM05D005971 ORTHO05D007459 3.8e-10 71.6 126 35.7
GSVIVG01020432001 Vitis vinifera HOM05D005971 ORTHO05D007459 8.0e-08 63.9 77 41.6
Glyma.08G171600 Glycine max HOM05D005971 ORTHO05D007459 2.0e-06 59.3 54 53.7


User provided reference genes

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