Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G492.45 Capsicum annuum HOM05D004608 ORTHO05D006533 9.1e-229 796.6 410 100.0
Sopen10g001840 Solanum pennellii HOM05D004608 ORTHO05D006533 1.2e-212 743.0 410 93.9
Solyc10g005890.3 Solanum lycopersicum HOM05D004608 ORTHO05D006533 1.6e-212 742.7 410 93.7
PGSC0003DMG400014406 Solanum tuberosum HOM05D004608 ORTHO05D006533 1.7e-211 739.2 405 93.8
Nitab4.5_0007214g0010 Nicotiana tabacum HOM05D004608 ORTHO05D006533 1.4e-197 693.0 410 88.8
Peaxi162Scf00219g00158 Petunia axillaris HOM05D004608 ORTHO05D006533 1.1e-189 666.8 415 85.5
Cc05_g15480 Coffea canephora HOM05D004608 ORTHO05D006533 4.1e-189 664.8 411 83.0
TWI38G2408 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 6.8e-184 647.5 412 81.3
Lj1C897G12 Lonicera japonica HOM05D004608 ORTHO05D006533 1.2e-183 646.7 413 80.6
DCAR_017596 Daucus carota HOM05D004608 ORTHO05D006533 4.4e-183 644.8 406 81.8
Prupe.6G031700 Prunus persica HOM05D004608 ORTHO05D006533 4.4e-183 644.8 412 82.3
TWI38G1265 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 4.4e-183 644.8 412 81.1
QL08p001615 Quercus lobata HOM05D004608 ORTHO05D006533 9.9e-183 643.7 409 80.7
SGA_v2.0_scaffold168G38588 Striga asiatica HOM05D004608 ORTHO05D006533 3.8e-182 641.7 411 81.5
MD03G1039600 Malus domestica HOM05D004608 ORTHO05D006533 6.4e-182 641.0 412 81.6
Ciclev10008478m.g Citrus clementina HOM05D004608 ORTHO05D006533 2.4e-181 639.0 413 80.6
Cfa016939 Carpinus fangiana HOM05D004608 ORTHO05D006533 9.2e-181 637.1 410 80.7
MD11G1040100 Malus domestica HOM05D004608 ORTHO05D006533 3.5e-180 635.2 412 80.8
Potri.001G469300 Populus trichocarpa HOM05D004608 ORTHO05D006533 3.5e-180 635.2 412 80.8
Potri.011G166100 Populus trichocarpa HOM05D004608 ORTHO05D006533 7.8e-180 634.0 412 80.8
Migut.M01599 Erythranthe guttata HOM05D004608 ORTHO05D006533 2.3e-179 632.5 414 81.4
Duzib213G0525 Durio zibethinus HOM05D004608 ORTHO05D006533 7.3e-178 627.5 411 79.8
MSTRG.7029 Avicennia marina HOM05D004608 ORTHO05D006533 1.6e-177 626.3 413 79.4
CiPaw.12G141700 Carya illinoinensis HOM05D004608 ORTHO05D006533 3.6e-177 625.2 413 78.7
Sabra16G0318300 Salix brachista HOM05D004608 ORTHO05D006533 6.2e-177 624.4 416 78.8
HanXRQChr05g0160221 Helianthus annuus HOM05D004608 ORTHO05D006533 1.4e-176 623.2 414 78.7
Rhsim06G0233900 Rhododendron simsii HOM05D004608 ORTHO05D006533 1.8e-176 622.9 410 79.3
CSS0047803 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 4.0e-176 621.7 410 78.5
HanXRQChr11g0334621 Helianthus annuus HOM05D004608 ORTHO05D006533 9.0e-176 620.5 410 79.0
PGR031G2516 Punica granatum HOM05D004608 ORTHO05D006533 9.0e-176 620.5 414 78.0
Actinidia30368 Actinidia chinensis HOM05D004608 ORTHO05D006533 1.5e-175 619.8 410 78.0
Sed0006020 Sechium edule HOM05D004608 ORTHO05D006533 1.3e-174 616.7 408 77.7
Gohir.D13G133200 Gossypium hirsutum HOM05D004608 ORTHO05D006533 1.7e-174 616.3 411 77.9
Gohir.A13G130142 Gossypium hirsutum HOM05D004608 ORTHO05D006533 2.9e-174 615.5 411 77.6
GSVIVG01014786001 Vitis vinifera HOM05D004608 ORTHO05D006533 3.8e-174 615.1 413 78.0
vmacro11628 Vaccinium macrocarpon HOM05D004608 ORTHO05D006533 4.9e-174 614.8 423 76.6
RcHm_v2.0_Chr5g0075221 Rosa chinensis HOM05D004608 ORTHO05D006533 1.1e-173 613.6 412 78.2
Oeu026626.2 Olea europaea HOM05D004608 ORTHO05D006533 1.4e-173 613.2 420 77.1
CsaV3_7G021370 Cucumis sativus L. HOM05D004608 ORTHO05D006533 2.4e-173 612.5 408 77.7
ECA236G2785 Erigeron canadensis HOM05D004608 ORTHO05D006533 3.2e-173 612.1 412 77.9
Glyma.18G072500 Glycine max HOM05D004608 ORTHO05D006533 3.2e-173 612.1 413 77.0
Sp3g11470 Schrenkiella parvula HOM05D004608 ORTHO05D006533 4.2e-173 611.7 411 77.4
Gorai.013G149500 Gossypium raimondii HOM05D004608 ORTHO05D006533 9.3e-173 610.5 419 76.4
AT3G13235 Arabidopsis thaliana HOM05D004608 ORTHO05D006533 1.2e-172 610.1 415 76.6
Eucgr.F03661 Eucalyptus grandis HOM05D004608 ORTHO05D006533 1.6e-172 609.8 415 77.3
Thhalv10020839m.g Eutrema salsugineum HOM05D004608 ORTHO05D006533 1.6e-172 609.8 411 77.1
COL.COLO4_07760 Corchorus olitorius HOM05D004608 ORTHO05D006533 2.1e-172 609.4 411 76.9
EL10Ac4g07509 Beta vulgaris HOM05D004608 ORTHO05D006533 7.8e-172 607.4 411 76.2
THA.LOC104815684 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 7.8e-172 607.4 416 76.7
Ca_14850_v3 Cicer arietinum L. HOM05D004608 ORTHO05D006533 1.3e-171 606.7 418 76.1
AL3G25090 Arabidopsis lyrata HOM05D004608 ORTHO05D006533 3.0e-171 605.5 419 75.9
CARHR087890 Cardamine hirsuta HOM05D004608 ORTHO05D006533 3.0e-171 605.5 415 75.9
Atru.chr2.3848 Acer truncatum HOM05D004608 ORTHO05D006533 3.9e-171 605.1 408 76.7
Cpa.g.sc12.91 Carica papaya HOM05D004608 ORTHO05D006533 3.9e-171 605.1 412 76.9
Sed0022757 Sechium edule HOM05D004608 ORTHO05D006533 6.6e-171 604.4 408 77.0
ClCG09G021670 Citrullus lanatus HOM05D004608 ORTHO05D006533 1.5e-170 603.2 430 74.0
Glyma.08G337500 Glycine max HOM05D004608 ORTHO05D006533 1.5e-170 603.2 413 76.5
Nn1g07694 Nelumbo nucifera HOM05D004608 ORTHO05D006533 1.5e-170 603.2 410 76.8
Hund22995 Selenicereus undatus HOM05D004608 ORTHO05D006533 2.5e-170 602.4 411 74.5
C03p46240 Brassica napus HOM05D004608 ORTHO05D006533 5.6e-170 601.3 419 75.4
Lsat_1_v5_gn_7_116460 Lactuca sativa HOM05D004608 ORTHO05D006533 5.6e-170 601.3 412 76.5
BraA03t12964Z Brassica rapa HOM05D004608 ORTHO05D006533 1.3e-169 600.1 412 76.0
Phvul.006G060300 Phaseolus vulgaris HOM05D004608 ORTHO05D006533 1.3e-169 600.1 413 76.5
A03p38110 Brassica napus HOM05D004608 ORTHO05D006533 1.6e-169 599.7 412 76.0
Thecc.07G005400 Theobroma cacao HOM05D004608 ORTHO05D006533 2.8e-169 599.0 412 76.2
Gorai.009G453300 Gossypium raimondii HOM05D004608 ORTHO05D006533 3.6e-169 598.6 412 75.0
VMungo0540G0162 Vigna mungo HOM05D004608 ORTHO05D006533 4.8e-169 598.2 413 75.5
CSS0013715 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 8.1e-169 597.4 410 77.3
Gohir.D05G386600 Gossypium hirsutum HOM05D004608 ORTHO05D006533 8.1e-169 597.4 412 74.8
BolC3t16895H Brassica oleracea HOM05D004608 ORTHO05D006533 1.8e-168 596.3 421 75.3
Lalb_Chr15g0082461 Lupinus albus HOM05D004608 ORTHO05D006533 2.4e-168 595.9 411 75.7
arahy.Tifrunner.gnm1.ann1.R4UTE8 Arachis hypogaea HOM05D004608 ORTHO05D006533 3.1e-168 595.5 416 75.2
Haze_09894 Corylus avellana HOM05D004608 ORTHO05D006533 9.0e-168 594.0 425 74.4
CANSAT11G0422 Cannabis sativa HOM05D004608 ORTHO05D006533 1.2e-167 593.6 411 74.5
MELO3C013214.2 Cucumis melo HOM05D004608 ORTHO05D006533 1.2e-167 593.6 409 76.5
MBI14_g00953_MAGBIO Magnolia biondii HOM05D004608 ORTHO05D006533 1.2e-167 593.6 412 74.0
C01p51800 Brassica napus HOM05D004608 ORTHO05D006533 1.5e-167 593.2 411 74.5
Gohir.A04G003100 Gossypium hirsutum HOM05D004608 ORTHO05D006533 3.4e-167 592.0 412 74.3
FvH4_3g42010 Fragaria vesca HOM05D004608 ORTHO05D006533 1.3e-166 590.1 412 75.5
Sabra11G0139800 Salix brachista HOM05D004608 ORTHO05D006533 3.8e-166 588.6 449 71.7
Lj6g0013957 Lotus japonicus HOM05D004608 ORTHO05D006533 4.9e-166 588.2 412 75.2
Aqoxy4G02317 Aquilegia oxysepala HOM05D004608 ORTHO05D006533 8.4e-166 587.4 413 76.0
TPR.G17932 Trifolium pratense HOM05D004608 ORTHO05D006533 8.4e-166 587.4 412 74.3
arahy.Tifrunner.gnm1.ann1.EI2AUC Arachis hypogaea HOM05D004608 ORTHO05D006533 1.4e-165 586.6 430 72.6
Nitab4.5_0001622g0040 Nicotiana tabacum HOM05D004608 ORTHO05D006533 1.4e-165 586.6 355 85.6
FAN16G3187 Fragaria x ananassa HOM05D004608 ORTHO05D006533 7.1e-165 584.3 423 73.5
A01p40280 Brassica napus HOM05D004608 ORTHO05D006533 4.6e-164 581.6 412 73.3
Carub.0003s1265 Capsella rubella HOM05D004608 ORTHO05D006533 4.6e-164 581.6 415 73.5
AUR62017165 Chenopodium quinoa HOM05D004608 ORTHO05D006533 4.6e-164 581.6 409 73.3
Aa31LG8G500 Aethionema arabicum HOM05D004608 ORTHO05D006533 1.0e-163 580.5 424 71.5
FAN25G0703 Fragaria x ananassa HOM05D004608 ORTHO05D006533 1.3e-163 580.1 423 73.0
BraA01t04064Z Brassica rapa HOM05D004608 ORTHO05D006533 5.1e-163 578.2 414 73.4
AUR62035639 Chenopodium quinoa HOM05D004608 ORTHO05D006533 8.7e-163 577.4 409 73.1
FAN11G3108 Fragaria x ananassa HOM05D004608 ORTHO05D006533 2.5e-162 575.9 443 70.2
FAN21G2140 Fragaria x ananassa HOM05D004608 ORTHO05D006533 2.5e-162 575.9 443 70.2
PSO541G2325 Papaver somniferum HOM05D004608 ORTHO05D006533 2.5e-162 575.9 412 72.3
Dinv40894 Davidia involucrata HOM05D004608 ORTHO05D006533 1.1e-157 560.5 360 80.8
Os02g0198600 Oryza sativa ssp. japonica HOM05D004608 ORTHO05D006533 1.6e-156 556.6 418 71.3
ATR0587G001 Amborella trichopoda HOM05D004608 ORTHO05D006533 3.9e-155 552.0 390 73.3
Manes.05G206400 Manihot esculenta HOM05D004608 ORTHO05D006533 9.0e-152 540.8 338 82.5
Hma1.2p1_0193F.1_g084100 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 1.4e-149 533.5 478 63.6
Hma1.2p1_2995F.1_g331425 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 1.4e-149 533.5 478 63.6
TAR624G0837 Trochodendron aralioides HOM05D004608 ORTHO05D006533 1.0e-147 527.3 413 70.2
Psat5g164640 Pisum sativum HOM05D004608 ORTHO05D006533 1.8e-147 526.6 348 77.3
HPP92_021912 Vanilla planifolia HOM05D004608 ORTHO05D006533 8.7e-147 524.2 415 66.7
THA.LOC104801910 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 1.3e-145 520.4 362 74.9
THA.LOC104810298 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 1.3e-145 520.4 362 74.9
Zm00001eb205890 Zea mays HOM05D004608 ORTHO05D006533 2.2e-142 509.6 353 75.1
BolC1t05127H Brassica oleracea HOM05D004608 ORTHO05D006533 2.9e-142 509.2 417 66.4
Pp3c4_20890 Physcomitrium patens HOM05D004608 ORTHO05D006533 1.1e-136 490.7 417 61.6
TAR626G0684 Trochodendron aralioides HOM05D004608 ORTHO05D006533 3.1e-136 489.2 316 78.5
Duzib268G0270 Durio zibethinus HOM05D004608 ORTHO05D006533 2.7e-132 476.1 412 63.6
AagrBONN_evm.TU.Sc2ySwM_117.3155 Anthoceros agrestis HOM05D004608 ORTHO05D006533 5.7e-130 468.4 425 58.4
Oeu019694.2 Olea europaea HOM05D004608 ORTHO05D006533 5.7e-122 441.8 426 60.1
Mapoly0030s0110 Marchantia polymorpha HOM05D004608 ORTHO05D006533 2.1e-116 423.3 383 57.4
Oeu019695.1 Olea europaea HOM05D004608 ORTHO05D006533 8.3e-113 411.4 405 57.8
Sc03g0011700 Simmondsia chinensis HOM05D004608 ORTHO05D006533 1.7e-110 403.7 273 77.3
unitig_899.g15266 Utricularia gibba HOM05D004608 ORTHO05D006533 1.1e-101 374.4 324 66.0
Actinidia10581 Actinidia chinensis HOM05D004608 ORTHO05D006533 7.2e-101 371.7 360 60.3
Ah.06g180960 Amaranthus hybridus HOM05D004608 ORTHO05D006533 1.8e-99 367.1 320 62.8
MCO11G772 Micromonas commoda HOM05D004608 ORTHO05D006533 1.6e-87 327.4 417 46.5
CBR_g36902 Chara braunii HOM05D004608 ORTHO05D006533 2.0e-87 327.0 316 55.1
PRCOL_00000426 Prasinoderma coloniale HOM05D004608 ORTHO05D006533 1.1e-80 304.7 428 42.3
CDE05G0237 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 7.6e-74 282.0 262 60.3
Pp3c17_4800 Physcomitrium patens HOM05D004608 ORTHO05D006533 8.4e-73 278.5 464 40.1
Cre10.g447300 Chlamydomonas reinhardtii HOM05D004608 ORTHO05D006533 1.7e-65 254.2 475 35.4
Aa31LG10G450 Aethionema arabicum HOM05D004608 ORTHO05D006533 6.4e-57 225.7 326 43.6
CDE05G1663 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 1.4e-56 224.6 126 84.1
QL09p009005 Quercus lobata HOM05D000176 ORTHO05D000106 1.7e-54 217.6 140 78.6
Cfa022177 Carpinus fangiana HOM05D004608 ORTHO05D006533 4.5e-50 203.0 344 39.0
Aa31LG10G470 Aethionema arabicum HOM05D004608 ORTHO05D006533 9.9e-50 201.8 316 41.5
unitig_699.g19599 Utricularia gibba HOM05D004608 ORTHO05D006533 1.0e-46 191.8 337 35.3
CSS0026438 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 8.1e-44 182.2 105 83.8
CSS0036658 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 2.4e-43 180.6 105 82.9
Ah.06g180950 Amaranthus hybridus HOM05D004608 ORTHO05D006533 2.5e-40 170.6 131 64.9
AL5G25300 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 2.5e-40 170.6 112 75.9
QL05p082689 Quercus lobata HOM05D004608 ORTHO05D006533 9.0e-35 152.1 98 80.6
AUR62020809 Chenopodium quinoa HOM05D004608 ORTHO05D006533 2.1e-31 141.0 153 54.2
AL3G34310 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 1.0e-25 122.1 129 53.5
CSS0047513 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 3.0e-22 110.5 99 57.6
MD12G1084200 Malus domestica HOM05D004608 ORTHO05D249232 3.9e-22 110.2 65 81.5
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 4.8e-20 103.2 109 54.1
VMungo0954G0002 Vigna mungo HOM05D004608 ORTHO05D432787 2.0e-18 97.8 129 45.7
CDE05G3009 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 2.6e-18 97.4 73 67.1
unitig_899.g15265 Utricularia gibba HOM05D004608 ORTHO05D018951 2.1e-15 87.8 96 53.1
Ca_07476_v3 Cicer arietinum L. HOM05D004608 ORTHO05D018951 6.7e-14 82.8 59 74.6
A05p36340 Brassica napus HOM05D004608 ORTHO05D006533 1.1e-13 82.0 49 81.6
CBR_g31527 Chara braunii HOM05D004608 ORTHO05D006533 2.2e-12 77.8 96 43.8
TAR629G0124 Trochodendron aralioides HOM05D002759 ORTHO05D021026 4.8e-12 76.6 44 81.8
CDE05G1534 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 8.2e-12 75.9 54 66.7
CDE05G2773 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 9.1e-11 72.4 70 61.4
HanXRQChr05g0144601 Helianthus annuus HOM05D004608 ORTHO05D018951 1.0e-09 68.9 36 88.9
HanXRQChr08g0229721 Helianthus annuus HOM05D004608 ORTHO05D018951 1.0e-09 68.9 36 88.9
HanXRQChr12g0367991 Helianthus annuus HOM05D004608 ORTHO05D018951 1.0e-09 68.9 36 88.9
HanXRQChr16g0512931 Helianthus annuus HOM05D004608 ORTHO05D018951 2.5e-08 64.3 36 88.9
QL03p010974 Quercus lobata HOM05D003881 ORTHO05D004343 4.2e-08 63.5 49 65.3
Glyma.10G116100 Glycine max HOM05D004608 ORTHO05D021061 7.2e-08 62.8 31 87.1
QL09p040375 Quercus lobata HOM05D000176 ORTHO05D000106 7.2e-08 62.8 42 73.8
Sopen12g018380 Solanum pennellii HOM05D000691 ORTHO05D000378 7.2e-08 62.8 130 30.0
Sopen04g010080 Solanum pennellii HOM05D000004 ORTHO05D000002 9.4e-08 62.4 130 30.0
Sopen07g021860 Solanum pennellii HOM05D000004 ORTHO05D000002 9.4e-08 62.4 130 30.0
Sopen07g015160 Solanum pennellii HOM05D000691 ORTHO05D000378 1.2e-07 62.0 130 30.0
Lj3C745G8 Lonicera japonica HOM05D000041 ORTHO05D000452 2.1e-07 61.2 91 47.3
Sopen09g023520 Solanum pennellii HOM05D000004 ORTHO05D000002 2.1e-07 61.2 130 30.0
EL10Ac5g11554 Beta vulgaris HOM05D003131 ORTHO05D003761 2.7e-07 60.8 56 57.1
Sopen07g004930 Solanum pennellii HOM05D000004 ORTHO05D000002 4.7e-07 60.1 157 27.4
arahy.Tifrunner.gnm1.ann1.C1KQ7I Arachis hypogaea HOM05D004608 ORTHO05D006012 6.1e-07 59.7 50 62.0
MD05G1213200 Malus domestica HOM05D004608 ORTHO05D006533 8.0e-07 59.3 64 56.2
Sopen04g014250 Solanum pennellii HOM05D000004 ORTHO05D000378 1.0e-06 58.9 134 26.9
MD05G1213500 Malus domestica HOM05D004608 ORTHO05D246297 1.4e-06 58.5 61 57.4
QL05p082760 Quercus lobata HOM05D004608 ORTHO05D338097 3.0e-06 57.4 37 73.0


User provided reference genes

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