Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G490.6 Capsicum annuum HOM05D002310 ORTHO05D002326 2.7e-118 428.7 220 100.0
Solyc09g076040.3 Solanum lycopersicum HOM05D002310 ORTHO05D002326 1.2e-12 77.8 40 87.5
Sopen09g030870 Solanum pennellii HOM05D002310 ORTHO05D002326 1.2e-12 77.8 40 87.5
PGSC0003DMG400030084 Solanum tuberosum HOM05D002310 ORTHO05D002326 1.2e-12 77.8 40 87.5
CAN.G490.5 Capsicum annuum HOM05D002310 ORTHO05D002326 2.0e-12 77.0 40 85.0
Peaxi162Scf00092g01019 Petunia axillaris HOM05D002310 ORTHO05D002326 2.6e-12 76.6 43 79.1
AUR62033632 Chenopodium quinoa HOM05D002310 ORTHO05D002326 1.7e-11 73.9 40 82.5
AUR62034749 Chenopodium quinoa HOM05D002310 ORTHO05D002326 1.7e-11 73.9 40 82.5
Aqoxy2G03391 Aquilegia oxysepala HOM05D002310 ORTHO05D002326 2.9e-11 73.2 48 68.8
EL10As3g23290 Beta vulgaris HOM05D002310 ORTHO05D002326 6.4e-11 72.0 40 82.5
Dinv44536 Davidia involucrata HOM05D002310 ORTHO05D002326 8.3e-11 71.6 43 74.4
Nn4g26323 Nelumbo nucifera HOM05D002310 ORTHO05D002326 2.4e-10 70.1 43 69.8
Potri.008G152900 Populus trichocarpa HOM05D002310 ORTHO05D002326 3.2e-10 69.7 40 72.5
ClCG06G006230 Citrullus lanatus HOM05D002310 ORTHO05D002326 9.2e-10 68.2 40 75.0
MELO3C012650.2 Cucumis melo HOM05D002310 ORTHO05D002326 9.2e-10 68.2 40 75.0
CsaV3_7G022500 Cucumis sativus L. HOM05D002310 ORTHO05D002326 9.2e-10 68.2 40 75.0
Phvul.007G057400 Phaseolus vulgaris HOM05D002310 ORTHO05D002326 9.2e-10 68.2 40 72.5
Cpa.g.sc58.107 Carica papaya HOM05D002310 ORTHO05D002326 1.2e-09 67.8 40 70.0
Glyma.20G146000 Glycine max HOM05D002310 ORTHO05D002326 1.2e-09 67.8 97 37.1
Lj5g0003431 Lotus japonicus HOM05D002310 ORTHO05D002326 1.2e-09 67.8 40 70.0
Sabra10G0055400 Salix brachista HOM05D002310 ORTHO05D002326 1.2e-09 67.8 40 72.5
PSO832G1500 Papaver somniferum HOM05D002310 ORTHO05D002326 1.6e-09 67.4 91 39.6
Ah.04g157080 Amaranthus hybridus HOM05D002310 ORTHO05D002326 2.0e-09 67.0 53 58.5
CSS0035785 Camellia sinensis var. sinensis HOM05D002310 ORTHO05D002326 2.0e-09 67.0 40 70.0
Cfa015645 Carpinus fangiana HOM05D002310 ORTHO05D002326 2.0e-09 67.0 40 67.5
Eucgr.H03481 Eucalyptus grandis HOM05D002310 ORTHO05D002326 2.0e-09 67.0 40 70.0
TAR362G0728 Trochodendron aralioides HOM05D002310 ORTHO05D002326 2.0e-09 67.0 38 71.1
GSVIVG01017976001 Vitis vinifera HOM05D002310 ORTHO05D002326 2.0e-09 67.0 43 65.1
CiPaw.01G166000 Carya illinoinensis HOM05D002310 ORTHO05D002326 2.7e-09 66.6 40 65.0
Ciclev10005817m.g Citrus clementina HOM05D002310 ORTHO05D002326 2.7e-09 66.6 40 70.0
DCAR_027217 Daucus carota HOM05D002310 ORTHO05D002326 2.7e-09 66.6 46 65.2
Cc03_g03780 Coffea canephora HOM05D002310 ORTHO05D002326 3.5e-09 66.2 38 76.3
Dinv13995 Davidia involucrata HOM05D002310 ORTHO05D002326 3.5e-09 66.2 41 70.7
Duzib151G0125 Durio zibethinus HOM05D002310 ORTHO05D002326 3.5e-09 66.2 103 35.0
Glyma.10G248100 Glycine max HOM05D002310 ORTHO05D002326 3.5e-09 66.2 97 36.1
Nn1g02320 Nelumbo nucifera HOM05D002310 ORTHO05D002326 3.5e-09 66.2 40 67.5
TWI09G0856 Tripterygium wilfordii HOM05D002310 ORTHO05D002326 3.5e-09 66.2 40 72.5
TAR362G0281 Trochodendron aralioides HOM05D002310 ORTHO05D002326 3.5e-09 66.2 37 75.7
Actinidia23510 Actinidia chinensis HOM05D002310 ORTHO05D002326 4.6e-09 65.9 43 62.8
BcaB06g26348 Brassica carinata HOM05D002310 ORTHO05D002326 4.6e-09 65.9 104 37.5
Gohir.A09G056100 Gossypium hirsutum HOM05D002310 ORTHO05D002326 4.6e-09 65.9 40 65.0
Gohir.D09G055300 Gossypium hirsutum HOM05D002310 ORTHO05D002326 4.6e-09 65.9 40 65.0
Gorai.006G068300 Gossypium raimondii HOM05D002310 ORTHO05D002326 4.6e-09 65.9 40 65.0
PSO210G3829 Papaver somniferum HOM05D002310 ORTHO05D002326 6.0e-09 65.5 91 38.5
RcHm_v2.0_Chr4g0416221 Rosa chinensis HOM05D002310 ORTHO05D002326 6.0e-09 65.5 40 65.0
Sabra08G0116500 Salix brachista HOM05D002310 ORTHO05D002326 6.0e-09 65.5 40 67.5
Potri.010G087400 Populus trichocarpa HOM05D002310 ORTHO05D002326 7.8e-09 65.1 40 67.5
Prupe.1G013600 Prunus persica HOM05D002310 ORTHO05D002326 7.8e-09 65.1 40 65.0
Sc15g0003290 Simmondsia chinensis HOM05D002310 ORTHO05D002326 7.8e-09 65.1 40 65.0
VMungo0720G0449 Vigna mungo HOM05D002310 ORTHO05D002326 7.8e-09 65.1 93 36.6
Ca_10897_v3 Cicer arietinum L. HOM05D002310 ORTHO05D002326 1.0e-08 64.7 40 65.0
FvH4_4g15540 Fragaria vesca HOM05D002310 ORTHO05D002326 1.0e-08 64.7 40 62.5
FAN07G0096 Fragaria x ananassa HOM05D002310 ORTHO05D002326 1.0e-08 64.7 40 62.5
FAN12G2432 Fragaria x ananassa HOM05D002310 ORTHO05D002326 1.0e-08 64.7 40 62.5
FAN17G0990 Fragaria x ananassa HOM05D002310 ORTHO05D002326 1.0e-08 64.7 40 62.5
Thecc.04G232000 Theobroma cacao HOM05D002310 ORTHO05D002326 1.0e-08 64.7 103 35.0
BcaC05g28069 Brassica carinata HOM05D002310 ORTHO05D002326 1.3e-08 64.3 50 58.0
A05p26290 Brassica napus HOM05D002310 ORTHO05D002326 1.3e-08 64.3 50 58.0
C05p40910 Brassica napus HOM05D002310 ORTHO05D002326 1.3e-08 64.3 50 58.0
BolC5t32833H Brassica oleracea HOM05D002310 ORTHO05D002326 1.3e-08 64.3 50 58.0
BraA05t21506Z Brassica rapa HOM05D002310 ORTHO05D002326 1.3e-08 64.3 50 58.0
CiPaw.02G097300 Carya illinoinensis HOM05D002310 ORTHO05D002326 1.7e-08 63.9 40 62.5
MD13G1193000 Malus domestica HOM05D002310 ORTHO05D002326 1.7e-08 63.9 43 58.1
MD16G1193900 Malus domestica HOM05D002310 ORTHO05D002326 1.7e-08 63.9 43 58.1
QL06p002477 Quercus lobata HOM05D002310 ORTHO05D002326 1.7e-08 63.9 40 62.5
CARHR098340 Cardamine hirsuta HOM05D002310 ORTHO05D002326 2.3e-08 63.5 38 71.1
FAN22G1262 Fragaria x ananassa HOM05D002310 ORTHO05D002326 2.3e-08 63.5 40 62.5
PGR004G1373 Punica granatum HOM05D002310 ORTHO05D002326 2.3e-08 63.5 43 65.1
CSS0045550 Camellia sinensis var. sinensis HOM05D002310 ORTHO05D002326 3.0e-08 63.2 43 60.5
Manes.03G178600 Manihot esculenta HOM05D002310 ORTHO05D002326 3.0e-08 63.2 40 65.0
TWI73G1015 Tripterygium wilfordii HOM05D002310 ORTHO05D002326 3.0e-08 63.2 102 36.3
Atru.ctg752_3.77 Acer truncatum HOM05D002310 ORTHO05D002326 3.9e-08 62.8 40 65.0
Duzib212G0102 Durio zibethinus HOM05D002310 ORTHO05D002326 3.9e-08 62.8 43 58.1
Thhalv10020450m.g Eutrema salsugineum HOM05D002310 ORTHO05D002326 3.9e-08 62.8 46 60.9
Lalb_Chr02g0140601 Lupinus albus HOM05D002310 ORTHO05D002326 3.9e-08 62.8 91 37.4
AL3G36740 Arabidopsis lyrata HOM05D002310 ORTHO05D002326 5.0e-08 62.4 40 67.5
arahy.Tifrunner.gnm1.ann1.5P4QKH Arachis hypogaea HOM05D002310 ORTHO05D002326 6.6e-08 62.0 40 65.0
arahy.Tifrunner.gnm1.ann1.Q8TT5G Arachis hypogaea HOM05D002310 ORTHO05D002326 6.6e-08 62.0 40 65.0
CANSAT78G0613 Cannabis sativa HOM05D002310 ORTHO05D002326 8.6e-08 61.6 40 65.0
Hma1.2p1_1344F.1_g277120 Hydrangea macrophylla HOM05D002310 ORTHO05D002326 8.6e-08 61.6 43 58.1
Sed0017994 Sechium edule HOM05D002310 ORTHO05D002326 8.6e-08 61.6 40 67.5
THA.LOC104808546 Tarenaya hassleriana HOM05D002310 ORTHO05D002326 8.6e-08 61.6 91 37.4
AT3G22430 Arabidopsis thaliana HOM05D002310 ORTHO05D002326 1.1e-07 61.2 40 65.0
ECA240G3014 Erigeron canadensis HOM05D002310 ORTHO05D002326 1.1e-07 61.2 100 34.0
CDE05G2383 Ceratophyllum demersum HOM05D002310 ORTHO05D002326 1.5e-07 60.8 40 57.5
Ah.13g072700 Amaranthus hybridus HOM05D000193 ORTHO05D002695 1.9e-07 60.5 40 62.5
Medtr1g103730 Medicago truncatula HOM05D002310 ORTHO05D002326 1.9e-07 60.5 40 62.5
Os03g0159200 Oryza sativa ssp. japonica HOM05D002310 ORTHO05D002326 2.5e-07 60.1 47 53.2
Sp3g20200 Schrenkiella parvula HOM05D002310 ORTHO05D002326 2.5e-07 60.1 52 48.1
Carub.0003s2261 Capsella rubella HOM05D002310 ORTHO05D002326 3.3e-07 59.7 40 62.5
CDE02G0428 Ceratophyllum demersum HOM05D002310 ORTHO05D002326 3.3e-07 59.7 40 55.0
HanXRQChr05g0145901 Helianthus annuus HOM05D002310 ORTHO05D002326 3.3e-07 59.7 40 60.0
Zm00001eb403270 Zea mays HOM05D002310 ORTHO05D002326 4.3e-07 59.3 103 35.9
Psat6g207480 Pisum sativum HOM05D002310 ORTHO05D002326 9.5e-07 58.2 40 55.0
Lsat_1_v5_gn_7_67261 Lactuca sativa HOM05D002310 ORTHO05D002326 1.2e-06 57.8 40 52.5
Lj6A608G62 Lonicera japonica HOM05D002310 ORTHO05D002326 1.2e-06 57.8 40 62.5
Nitab4.5_0004258g0040 Nicotiana tabacum HOM05D002310 ORTHO05D002326 1.2e-06 57.8 43 65.1
SalBow2G3435 Salvia bowleyana HOM05D002310 ORTHO05D002326 1.2e-06 57.8 38 60.5
Aa31LG8G9000 Aethionema arabicum HOM05D002310 ORTHO05D002326 1.6e-06 57.4 39 59.0
COL.COLO4_21478 Corchorus olitorius HOM05D002310 ORTHO05D002326 1.6e-06 57.4 43 53.5
ATR0697G286 Amborella trichopoda HOM05D002310 ORTHO05D002326 3.6e-06 56.2 43 48.8
TAR362G0961 Trochodendron aralioides HOM05D002310 ORTHO05D002326 3.6e-06 56.2 37 62.2
Oeu020078.1 Olea europaea HOM05D002310 ORTHO05D002326 4.7e-06 55.8 38 60.5
Sc19g0004150 Simmondsia chinensis HOM05D002310 ORTHO05D002326 4.7e-06 55.8 40 57.5
SGA_v2.0_scaffold39G15232 Striga asiatica HOM05D002310 ORTHO05D002326 4.7e-06 55.8 38 55.3
SGA_v2.0_scaffold257G45713 Striga asiatica HOM05D002310 ORTHO05D002326 6.2e-06 55.5 41 51.2
TPR.G5506 Trifolium pratense HOM05D002310 ORTHO05D002326 8.1e-06 55.1 91 33.0


User provided reference genes

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