Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G484.7 Capsicum annuum HOM05D004400 ORTHO05D005479 2.1e-233 812.0 402 100.0
Nitab4.5_0011805g0020 Nicotiana tabacum HOM05D004400 ORTHO05D005479 4.0e-229 797.7 402 97.0
Solyc12g099930.2 Solanum lycopersicum HOM05D004400 ORTHO05D005479 6.8e-229 797.0 402 97.0
Sopen12g034550 Solanum pennellii HOM05D004400 ORTHO05D005479 6.8e-229 797.0 402 97.0
PGSC0003DMG400004652 Solanum tuberosum HOM05D004400 ORTHO05D005479 2.6e-228 795.0 402 96.8
Nitab4.5_0001925g0250 Nicotiana tabacum HOM05D004400 ORTHO05D005479 5.6e-223 777.3 438 88.8
Oeu025899.1 Olea europaea HOM05D004400 ORTHO05D005479 2.1e-222 775.4 402 93.0
unitig_8.g2992 Utricularia gibba HOM05D004400 ORTHO05D005479 3.1e-221 771.5 402 93.0
Rhsim13G0215900 Rhododendron simsii HOM05D004400 ORTHO05D005479 1.2e-220 769.6 402 91.5
DCAR_029980 Daucus carota HOM05D004400 ORTHO05D005479 3.4e-220 768.1 402 92.5
COL.COLO4_07229 Corchorus olitorius HOM05D004400 ORTHO05D005479 1.3e-219 766.1 402 91.5
CSS0001177 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 1.7e-219 765.8 402 91.8
CSS0015379 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 1.7e-219 765.8 402 91.8
MSTRG.17628 Avicennia marina HOM05D004400 ORTHO05D005479 2.2e-219 765.4 402 91.8
Nn2g14932 Nelumbo nucifera HOM05D004400 ORTHO05D005479 2.2e-219 765.4 402 91.3
FAN25G1578 Fragaria x ananassa HOM05D004400 ORTHO05D005479 6.4e-219 763.8 402 91.5
FAN11G2969 Fragaria x ananassa HOM05D004400 ORTHO05D005479 1.1e-218 763.1 402 91.3
FAN21G0985 Fragaria x ananassa HOM05D004400 ORTHO05D005479 1.1e-218 763.1 402 91.5
FvH4_3g28090 Fragaria vesca HOM05D004400 ORTHO05D005479 1.4e-218 762.7 402 91.3
MD03G1168700 Malus domestica HOM05D004400 ORTHO05D005479 1.4e-218 762.7 402 92.0
RcHm_v2.0_Chr5g0050781 Rosa chinensis HOM05D004400 ORTHO05D005479 3.2e-218 761.5 402 91.3
Duzib170G1108 Durio zibethinus HOM05D004400 ORTHO05D005479 4.2e-218 761.1 402 90.5
FAN16G1059 Fragaria x ananassa HOM05D004400 ORTHO05D005479 5.4e-218 760.8 402 91.3
TWI75G1130 Tripterygium wilfordii HOM05D004400 ORTHO05D005479 5.4e-218 760.8 402 90.8
DCAR_002094 Daucus carota HOM05D004400 ORTHO05D005479 7.1e-218 760.4 402 91.0
Dinv36191 Davidia involucrata HOM05D004400 ORTHO05D005479 9.3e-218 760.0 402 90.8
Cpa.g.sc892.2 Carica papaya HOM05D004400 ORTHO05D005479 1.6e-217 759.2 402 91.3
Gohir.D13G221100 Gossypium hirsutum HOM05D004400 ORTHO05D005479 2.1e-217 758.8 402 90.3
Gorai.013G252200 Gossypium raimondii HOM05D004400 ORTHO05D005479 2.1e-217 758.8 402 90.3
Manes.02G141600 Manihot esculenta HOM05D004400 ORTHO05D005479 2.1e-217 758.8 402 90.5
Gohir.A05G070800 Gossypium hirsutum HOM05D004400 ORTHO05D005479 3.5e-217 758.1 402 90.3
MD11G1194500 Malus domestica HOM05D004400 ORTHO05D005479 3.5e-217 758.1 402 91.0
Thecc.09G244100 Theobroma cacao HOM05D004400 ORTHO05D005479 3.5e-217 758.1 402 89.8
Cc01_g05790 Coffea canephora HOM05D004400 ORTHO05D005479 4.6e-217 757.7 402 90.5
Gorai.009G074800 Gossypium raimondii HOM05D004400 ORTHO05D005479 4.6e-217 757.7 402 90.3
Hma1.2p1_0115F.1_g056060 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 4.6e-217 757.7 402 90.5
Hma1.2p1_0922F.1_g236910 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 6.0e-217 757.3 402 90.3
Prupe.4G258800 Prunus persica HOM05D004400 ORTHO05D005479 7.9e-217 756.9 402 90.5
Gohir.D05G073700 Gossypium hirsutum HOM05D004400 ORTHO05D005479 1.3e-216 756.1 402 90.3
Manes.01G181700 Manihot esculenta HOM05D004400 ORTHO05D005479 1.7e-216 755.7 402 89.8
SalBow6G1637 Salvia bowleyana HOM05D004400 ORTHO05D005479 1.7e-216 755.7 402 90.8
QL01p017697 Quercus lobata HOM05D004400 ORTHO05D005479 3.0e-216 755.0 401 90.0
SGA_v2.0_scaffold3G01468 Striga asiatica HOM05D004400 ORTHO05D005479 5.1e-216 754.2 402 90.8
Gohir.A13G217500 Gossypium hirsutum HOM05D004400 ORTHO05D005479 6.6e-216 753.8 402 90.0
Potri.001G253300 Populus trichocarpa HOM05D004400 ORTHO05D005479 6.6e-216 753.8 402 90.5
Duzib150G0360 Durio zibethinus HOM05D004400 ORTHO05D005479 2.5e-215 751.9 402 89.6
ECA233G2606 Erigeron canadensis HOM05D004400 ORTHO05D005479 3.3e-215 751.5 402 88.8
Lalb_Chr14g0365141 Lupinus albus HOM05D004400 ORTHO05D005479 4.3e-215 751.1 402 90.8
CANSAT64G2455 Cannabis sativa HOM05D004400 ORTHO05D005479 5.6e-215 750.7 402 90.5
CiPaw.14G115100 Carya illinoinensis HOM05D004400 ORTHO05D005479 5.6e-215 750.7 402 89.8
Atru.chr3.2806 Acer truncatum HOM05D004400 ORTHO05D005479 7.4e-215 750.4 402 89.1
AUR62000174 Chenopodium quinoa HOM05D004400 ORTHO05D004881 7.4e-215 750.4 402 88.8
CiPaw.13G152600 Carya illinoinensis HOM05D004400 ORTHO05D005479 9.6e-215 750.0 402 89.3
BcaC04g23083 Brassica carinata HOM05D004400 ORTHO05D005479 1.3e-214 749.6 402 89.3
A09p10380 Brassica napus HOM05D004400 ORTHO05D005479 1.3e-214 749.6 402 89.3
BraA09t36682Z Brassica rapa HOM05D004400 ORTHO05D005479 1.3e-214 749.6 402 89.3
Ca_13793_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 1.3e-214 749.6 402 89.1
HanXRQChr12g0381201 Helianthus annuus HOM05D004400 ORTHO05D005479 1.3e-214 749.6 402 89.1
Lalb_Chr17g0348031 Lupinus albus HOM05D004400 ORTHO05D005479 1.3e-214 749.6 402 90.0
C09p12320 Brassica napus HOM05D004400 ORTHO05D005479 1.6e-214 749.2 402 89.3
BolC9t54125H Brassica oleracea HOM05D004400 ORTHO05D005479 1.6e-214 749.2 402 89.3
PGR102G2835 Punica granatum HOM05D004400 ORTHO05D005479 2.1e-214 748.8 402 90.0
HPP92_001014 Vanilla planifolia HOM05D004400 ORTHO05D005479 2.1e-214 748.8 402 89.8
Haze_23202 Corylus avellana HOM05D004400 ORTHO05D005479 2.8e-214 748.4 402 89.1
Lsat_1_v5_gn_5_64980 Lactuca sativa HOM05D004400 ORTHO05D005479 2.8e-214 748.4 402 88.8
Potri.009G047700 Populus trichocarpa HOM05D004400 ORTHO05D005479 2.8e-214 748.4 402 89.8
Sed0009312 Sechium edule HOM05D004400 ORTHO05D005479 2.8e-214 748.4 402 89.1
THA.LOC104826484 Tarenaya hassleriana HOM05D004400 ORTHO05D005479 2.8e-214 748.4 402 89.1
BcaC01g03126 Brassica carinata HOM05D004400 ORTHO05D005479 4.8e-214 747.7 402 89.1
C03p55800 Brassica napus HOM05D004400 ORTHO05D005479 4.8e-214 747.7 402 89.1
BolC3t17861H Brassica oleracea HOM05D004400 ORTHO05D005479 4.8e-214 747.7 402 89.1
Thhalv10022711m.g Eutrema salsugineum HOM05D004400 ORTHO05D005479 4.8e-214 747.7 402 89.1
MBI13_g29527_MAGBIO Magnolia biondii HOM05D004400 ORTHO05D005479 4.8e-214 747.7 402 88.8
PSO384G2058 Papaver somniferum HOM05D004400 ORTHO05D005479 4.8e-214 747.7 402 89.6
BcaB08g34528 Brassica carinata HOM05D004400 ORTHO05D005479 1.1e-213 746.5 402 89.1
A03p44920 Brassica napus HOM05D004400 ORTHO05D005479 1.1e-213 746.5 402 88.8
BraA03t13629Z Brassica rapa HOM05D004400 ORTHO05D005479 1.1e-213 746.5 402 88.8
CsaV3_6G039090 Cucumis sativus L. HOM05D004400 ORTHO05D005479 1.1e-213 746.5 402 88.8
PSO339G5023 Papaver somniferum HOM05D004400 ORTHO05D005479 3.1e-213 745.0 402 89.3
Ciclev10015490m.g Citrus clementina HOM05D004400 ORTHO05D005479 4.0e-213 744.6 402 88.1
Cfa009835 Carpinus fangiana HOM05D004400 ORTHO05D005479 5.3e-213 744.2 402 88.6
Aqoxy2G00323 Aquilegia oxysepala HOM05D004400 ORTHO05D005479 6.9e-213 743.8 402 88.1
Eucgr.B03720 Eucalyptus grandis HOM05D004400 ORTHO05D005479 6.9e-213 743.8 402 88.8
ClCG02G022970 Citrullus lanatus HOM05D004400 ORTHO05D005479 9.0e-213 743.4 411 87.3
Lj3C181G6 Lonicera japonica HOM05D004400 ORTHO05D005479 9.0e-213 743.4 416 87.5
TAR623G1228 Trochodendron aralioides HOM05D004400 ORTHO05D005479 9.0e-213 743.4 402 88.6
AUR62039836 Chenopodium quinoa HOM05D004400 ORTHO05D005479 2.0e-212 742.3 402 87.6
TPR.G8487 Trifolium pratense HOM05D004400 ORTHO05D005479 2.0e-212 742.3 402 88.3
Lj3A187G31 Lonicera japonica HOM05D004400 ORTHO05D005479 2.6e-212 741.9 416 87.3
Sp3g26830 Schrenkiella parvula HOM05D004400 ORTHO05D005479 2.6e-212 741.9 402 88.6
CARHR105160 Cardamine hirsuta HOM05D004400 ORTHO05D005479 3.4e-212 741.5 402 88.1
Aa31sc61G60 Aethionema arabicum HOM05D004400 ORTHO05D005479 4.5e-212 741.1 402 88.8
MELO3C015151.2 Cucumis melo HOM05D004400 ORTHO05D005479 4.5e-212 741.1 402 89.1
AT2G13360 Arabidopsis thaliana HOM05D004400 ORTHO05D005479 7.6e-212 740.3 402 87.8
ATR0721G062 Amborella trichopoda HOM05D004400 ORTHO05D005479 9.9e-212 740.0 402 88.1
CsaV3_1G043170 Cucumis sativus L. HOM05D004400 ORTHO05D005479 1.3e-211 739.6 402 89.1
MELO3C014568.2 Cucumis melo HOM05D004400 ORTHO05D005479 1.7e-211 739.2 417 86.1
AL3G45260 Arabidopsis lyrata HOM05D004400 ORTHO05D005479 4.9e-211 737.6 402 87.6
Glyma.08G302600 Glycine max HOM05D004400 ORTHO05D005479 8.4e-211 736.9 402 88.1
Carub.0003s2789 Capsella rubella HOM05D004400 ORTHO05D005479 3.2e-210 734.9 402 87.3
Psat4g095360 Pisum sativum HOM05D004400 ORTHO05D005479 1.6e-209 732.6 402 87.1
Lj6g0016070 Lotus japonicus HOM05D004400 ORTHO05D005479 2.1e-209 732.3 402 86.6
Glyma.18G116900 Glycine max HOM05D004400 ORTHO05D005479 3.5e-209 731.5 402 87.3
CSS0007609 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 1.0e-208 729.9 402 87.1
Hund21989 Selenicereus undatus HOM05D004400 ORTHO05D005479 1.3e-208 729.6 402 86.1
VMungo0540G1800 Vigna mungo HOM05D004400 ORTHO05D005479 1.8e-208 729.2 402 87.6
LjContig00049g0014500 Lotus japonicus HOM05D004400 ORTHO05D005479 3.0e-208 728.4 398 86.7
Os08g0502700 Oryza sativa ssp. japonica HOM05D004400 ORTHO05D005479 8.7e-208 726.9 401 88.0
Phvul.006G029100 Phaseolus vulgaris HOM05D004400 ORTHO05D005479 1.5e-207 726.1 402 86.8
Sed0026623 Sechium edule HOM05D004400 ORTHO05D005479 1.5e-207 726.1 429 83.4
vmacro04009 Vaccinium macrocarpon HOM05D004400 ORTHO05D005479 4.8e-206 721.1 441 80.5
arahy.Tifrunner.gnm1.ann1.NTNX6Y Arachis hypogaea HOM05D004400 ORTHO05D005479 6.9e-205 717.2 402 87.1
arahy.Tifrunner.gnm1.ann1.U6ZXMA Arachis hypogaea HOM05D004400 ORTHO05D005479 1.0e-203 713.4 419 84.5
Hund07449 Selenicereus undatus HOM05D004400 ORTHO05D005479 2.9e-203 711.8 402 85.8
Actinidia16361 Actinidia chinensis HOM05D004400 ORTHO05D005479 1.4e-202 709.5 400 84.5
EL10Ac4g10172 Beta vulgaris HOM05D004400 ORTHO05D005479 3.2e-202 708.4 402 85.1
SEGI_24220 Sequoiadendron giganteum HOM05D004400 ORTHO05D005479 7.1e-202 707.2 402 83.1
Sabra09G0035000 Salix brachista HOM05D004400 ORTHO05D004881 3.7e-198 694.9 402 84.8
Zm00001eb034260 Zea mays HOM05D004400 ORTHO05D005479 4.8e-198 694.5 402 82.6
GSVIVG01037237001 Vitis vinifera HOM05D004400 ORTHO05D005479 1.4e-197 693.0 375 88.3
Sabra16G0154200 Salix brachista HOM05D004400 ORTHO05D004881 8.4e-195 683.7 402 83.8
Medtr5g090070 Medicago truncatula HOM05D004400 ORTHO05D005479 7.2e-194 680.6 402 81.8
Ca_06224_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 1.2e-193 679.9 402 81.3
Migut.N02365 Erythranthe guttata HOM05D004400 ORTHO05D005479 8.7e-192 673.7 361 90.9
Sc09g0000960 Simmondsia chinensis HOM05D004400 ORTHO05D005479 2.5e-191 672.2 357 89.9
TPR.G19354 Trifolium pratense HOM05D004400 ORTHO05D005479 7.4e-191 670.6 402 78.9
Psat2g019120 Pisum sativum HOM05D004400 ORTHO05D005479 9.7e-191 670.2 402 80.1
Medtr3g053890 Medicago truncatula HOM05D004400 ORTHO05D005479 5.3e-189 664.5 360 87.2
CDE08G1189 Ceratophyllum demersum HOM05D005522 ORTHO05D007414 8.8e-184 647.1 402 79.6
Peaxi162Scf00062g00919 Petunia axillaris HOM05D004400 ORTHO05D005479 4.3e-183 644.8 402 81.6
Oeu061291.1 Olea europaea HOM05D004400 ORTHO05D005479 2.2e-182 642.5 340 91.5
Mapoly0001s0436 Marchantia polymorpha HOM05D004400 ORTHO05D005479 9.1e-181 637.1 401 74.8
AagrBONN_evm.TU.Sc2ySwM_344.3612 Anthoceros agrestis HOM05D004400 ORTHO05D005479 3.0e-176 622.1 402 73.1
TAR369G0837 Trochodendron aralioides HOM05D004400 ORTHO05D005479 5.1e-176 621.3 334 89.2
SMO228G0177 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 8.8e-176 620.5 402 72.6
CBR_g39952 Chara braunii HOM05D004400 ORTHO05D005479 1.8e-173 612.8 402 72.4
Pp3c21_12100 Physcomitrium patens HOM05D004400 ORTHO05D005479 3.5e-172 608.6 403 71.7
Pp3c18_8240 Physcomitrium patens HOM05D004400 ORTHO05D005479 7.7e-172 607.4 403 71.2
SMO117G0208 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 3.3e-167 592.0 402 70.9
Mapoly0066s0091 Marchantia polymorpha HOM05D004400 ORTHO05D005479 1.7e-166 589.7 401 69.3
Pp3c1_24350 Physcomitrium patens HOM05D004400 ORTHO05D005479 3.0e-160 568.9 403 67.0
Dinv08771 Davidia involucrata HOM05D004400 ORTHO05D005479 5.2e-152 541.6 289 88.9
Medtr5g094410 Medicago truncatula HOM05D004400 ORTHO05D005479 5.6e-146 521.5 403 68.7
Sed0008818 Sechium edule HOM05D004400 ORTHO05D005479 7.5e-143 511.1 419 64.7
Medtr5g067370 Medicago truncatula HOM05D004400 ORTHO05D005479 1.5e-138 496.9 402 65.2
Zm00001eb034570 Zea mays HOM05D004400 ORTHO05D005479 1.1e-128 464.2 259 85.7
PRCOL_00005046 Prasinoderma coloniale HOM05D004400 ORTHO05D005479 1.6e-121 440.3 394 54.3
Cre01.g005150 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 9.2e-117 424.5 395 54.7
Psat5g194960 Pisum sativum HOM05D004400 ORTHO05D005479 6.6e-115 418.3 276 76.1
Zm00001eb034320 Zea mays HOM05D004400 ORTHO05D005479 5.8e-103 378.6 229 79.5
RcHm_v2.0_Chr2g0084601 Rosa chinensis HOM05D004400 ORTHO05D005479 1.2e-100 370.9 219 82.2
RcHm_v2.0_Chr5g0076081 Rosa chinensis HOM05D004400 ORTHO05D005479 4.6e-100 369.0 219 81.3
RcHm_v2.0_Chr2g0095031 Rosa chinensis HOM05D004400 ORTHO05D005479 1.0e-99 367.9 219 80.4
Pp3c10_5790 Physcomitrium patens HOM05D004400 ORTHO05D005479 3.5e-84 316.2 300 53.7
Actinidia06950 Actinidia chinensis HOM05D004400 ORTHO05D005479 1.7e-78 297.4 160 87.5
ClCG03G012880 Citrullus lanatus HOM05D004400 ORTHO05D005479 2.1e-76 290.4 163 85.3
Psat4g095320 Pisum sativum HOM05D004400 ORTHO05D005479 5.9e-55 219.2 116 89.7
Ca_13794_v3 Cicer arietinum L. HOM05D004400 ORTHO05D004881 3.7e-33 146.7 86 81.4
Cre06.g294650 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 4.1e-32 143.3 353 30.3
Cfa022418 Carpinus fangiana HOM05D004400 ORTHO05D005479 3.5e-31 140.2 351 27.6
Actinidia06949 Actinidia chinensis HOM05D004400 ORTHO05D005479 7.5e-18 95.9 47 93.6
Peaxi162Scf00234g00513 Petunia axillaris HOM05D004400 ORTHO05D306043 1.5e-13 81.6 72 61.1
Ah.08g223290 Amaranthus hybridus HOM05D004400 ORTHO05D005479 7.3e-13 79.3 45 75.6
CBR_g51244 Chara braunii HOM05D000019 ORTHO05D000353 8.1e-12 75.9 316 24.1
Pp3s34_170 Physcomitrium patens HOM05D000068 ORTHO05D011688 8.3e-09 65.9 355 21.7


User provided reference genes

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