Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G484.49 Capsicum annuum HOM05D005204 ORTHO05D006037 0.0e+00 1365.5 690 100.0
PGSC0003DMG400004628 Solanum tuberosum HOM05D005204 ORTHO05D006037 0.0e+00 1135.9 698 84.7
Sopen12g034090 Solanum pennellii HOM05D005204 ORTHO05D006037 0.0e+00 1110.1 691 82.6
Solyc12g099420.2 Solanum lycopersicum HOM05D005204 ORTHO05D006037 0.0e+00 1103.2 691 82.5
Peaxi162Scf00646g00324 Petunia axillaris HOM05D005204 ORTHO05D006037 4.5e-289 997.7 679 76.3
Nitab4.5_0003484g0040 Nicotiana tabacum HOM05D005204 ORTHO05D006037 3.4e-276 954.9 696 74.1
Nitab4.5_0000570g0320 Nicotiana tabacum HOM05D005204 ORTHO05D006037 1.6e-273 946.0 715 71.3
Nitab4.5_0003767g0030 Nicotiana tabacum HOM05D005204 ORTHO05D006037 2.6e-236 822.4 698 65.0
Peaxi162Scf00065g01219 Petunia axillaris HOM05D005204 ORTHO05D006037 2.9e-235 818.9 678 65.5
Nitab4.5_0000695g0090 Nicotiana tabacum HOM05D005204 ORTHO05D006037 3.1e-229 798.9 681 64.2
CSS0048761 Camellia sinensis var. sinensis HOM05D005204 ORTHO05D006037 7.7e-196 688.0 704 56.1
QL06p010355 Quercus lobata HOM05D005204 ORTHO05D006037 2.7e-193 679.5 707 56.4
Rhsim02G0007000 Rhododendron simsii HOM05D005204 ORTHO05D006037 1.1e-191 674.1 697 56.0
Oeu016254.2 Olea europaea HOM05D005204 ORTHO05D006037 4.4e-191 672.2 718 54.9
Oeu031982.1 Olea europaea HOM05D005204 ORTHO05D006037 2.2e-190 669.8 722 55.4
COL.COLO4_13824 Corchorus olitorius HOM05D005204 ORTHO05D006037 1.8e-189 666.8 719 53.8
Hma1.2p1_0078F.1_g040360 Hydrangea macrophylla HOM05D005204 ORTHO05D006037 1.9e-186 656.8 687 55.2
SalBow5G0318 Salvia bowleyana HOM05D005204 ORTHO05D006037 1.2e-185 654.1 687 56.3
Thecc.04G288800 Theobroma cacao HOM05D005204 ORTHO05D006037 4.0e-184 649.0 706 53.5
Atru.chr4.2898 Acer truncatum HOM05D005204 ORTHO05D006037 3.4e-183 646.0 695 54.7
MD16G1164600 Malus domestica HOM05D005204 ORTHO05D006037 3.4e-183 646.0 711 52.3
Prupe.1G123900 Prunus persica HOM05D005204 ORTHO05D006037 1.7e-182 643.7 707 53.2
Cfa015426 Carpinus fangiana HOM05D005204 ORTHO05D006037 4.8e-182 642.1 721 51.6
TAR633G1027 Trochodendron aralioides HOM05D005204 ORTHO05D006037 1.1e-181 641.0 688 54.5
vmacro15212 Vaccinium macrocarpon HOM05D005204 ORTHO05D006037 1.4e-181 640.6 713 54.3
Ciclev10004466m.g Citrus clementina HOM05D005204 ORTHO05D006037 1.6e-180 637.1 700 54.6
CiPaw.02G079900 Carya illinoinensis HOM05D005204 ORTHO05D006037 1.7e-179 633.6 694 53.7
Actinidia14280 Actinidia chinensis HOM05D005204 ORTHO05D006037 2.5e-178 629.8 650 56.2
MSTRG.24802 Avicennia marina HOM05D005204 ORTHO05D006037 2.5e-178 629.8 682 54.0
Migut.N00079 Erythranthe guttata HOM05D005204 ORTHO05D006037 5.5e-178 628.6 677 54.7
Duzib052G0651 Durio zibethinus HOM05D005204 ORTHO05D006037 1.6e-177 627.1 692 53.6
Gohir.A02G050800 Gossypium hirsutum HOM05D005204 ORTHO05D006037 3.0e-176 622.9 709 53.7
Gohir.D02G055700 Gossypium hirsutum HOM05D005204 ORTHO05D006037 2.0e-175 620.2 708 53.8
SGA_v2.0_scaffold428G51532 Striga asiatica HOM05D005204 ORTHO05D006037 5.7e-175 618.6 686 55.1
Gorai.005G061700 Gossypium raimondii HOM05D005204 ORTHO05D006037 3.1e-173 612.8 708 53.5
TWI73G0558 Tripterygium wilfordii HOM05D005204 ORTHO05D006037 1.6e-172 610.5 705 52.1
Nn1g01973 Nelumbo nucifera HOM05D005204 ORTHO05D006037 2.0e-172 610.1 697 51.1
RcHm_v2.0_Chr4g0423341 Rosa chinensis HOM05D005204 ORTHO05D006037 7.7e-172 608.2 702 52.3
Manes.03G200100 Manihot esculenta HOM05D005204 ORTHO05D006037 1.0e-171 607.8 688 52.9
FvH4_4g18640 Fragaria vesca HOM05D005204 ORTHO05D006037 2.3e-171 606.7 700 52.0
Cc03_g01540 Coffea canephora HOM05D005204 ORTHO05D006037 9.5e-170 601.3 725 52.0
FAN12G0364 Fragaria x ananassa HOM05D005204 ORTHO05D006037 2.1e-169 600.1 690 52.2
MD13G1164900 Malus domestica HOM05D005204 ORTHO05D006037 5.2e-168 595.5 714 51.0
Sabra08G0151500 Salix brachista HOM05D005204 ORTHO05D006037 5.2e-168 595.5 692 52.2
ECA246G1739 Erigeron canadensis HOM05D005204 ORTHO05D006037 6.8e-168 595.1 692 52.9
Potri.008G219100 Populus trichocarpa HOM05D005204 ORTHO05D006037 1.5e-167 594.0 686 51.9
FAN12G3005 Fragaria x ananassa HOM05D005204 ORTHO05D006037 3.4e-167 592.8 693 51.8
FAN07G2681 Fragaria x ananassa HOM05D005204 ORTHO05D006037 1.3e-166 590.9 690 51.4
Cpa.g.sc50.164 Carica papaya HOM05D005204 ORTHO05D006037 3.7e-166 589.3 708 50.4
Haze_01167 Corylus avellana HOM05D005204 ORTHO05D006037 8.3e-166 588.2 864 43.5
FAN17G1530 Fragaria x ananassa HOM05D005204 ORTHO05D006037 1.1e-165 587.8 700 51.0
Potri.010G010480 Populus trichocarpa HOM05D005204 ORTHO05D006037 1.1e-165 587.8 684 52.6
arahy.Tifrunner.gnm1.ann1.02VXE5 Arachis hypogaea HOM05D005204 ORTHO05D006037 2.7e-164 583.2 700 50.6
Lalb_Chr20g0117381 Lupinus albus HOM05D005204 ORTHO05D006037 5.9e-164 582.0 685 50.5
arahy.Tifrunner.gnm1.ann1.J2HRGN Arachis hypogaea HOM05D005204 ORTHO05D006037 7.8e-164 581.6 699 50.2
MBI18_g25094_MAGBIO Magnolia biondii HOM05D005204 ORTHO05D006037 1.9e-162 577.0 699 50.8
GSVIVG01035108001 Vitis vinifera HOM05D005204 ORTHO05D006037 1.0e-160 571.2 750 46.8
PGR004G0276 Punica granatum HOM05D005204 ORTHO05D006037 3.1e-160 569.7 691 50.7
Sc13g0003240 Simmondsia chinensis HOM05D005204 ORTHO05D006037 6.8e-160 568.5 674 50.9
Lalb_Chr18g0054391 Lupinus albus HOM05D005204 ORTHO05D006037 8.9e-160 568.2 665 50.4
EL10Ac3g06651 Beta vulgaris HOM05D005204 ORTHO05D006037 1.3e-158 564.3 717 50.1
HanXRQChr06g0173751 Helianthus annuus HOM05D005204 ORTHO05D006037 8.3e-158 561.6 697 50.2
Ca_01912_v3 Cicer arietinum L. HOM05D005204 ORTHO05D006037 9.2e-157 558.1 701 48.4
Dinv29726 Davidia involucrata HOM05D005204 ORTHO05D006037 9.2e-157 558.1 589 55.0
Sabra10G0006400 Salix brachista HOM05D005204 ORTHO05D006037 1.6e-156 557.4 683 50.7
Lsat_1_v5_gn_3_21680 Lactuca sativa HOM05D005204 ORTHO05D006037 1.3e-155 554.3 686 50.7
Psat1g155920 Pisum sativum HOM05D005204 ORTHO05D006037 1.7e-155 553.9 686 49.0
Lj6g0026338 Lotus japonicus HOM05D005204 ORTHO05D006037 2.5e-154 550.1 692 49.7
Lj6A680G91 Lonicera japonica HOM05D005204 ORTHO05D006037 7.3e-154 548.5 602 54.3
Hund20528 Selenicereus undatus HOM05D005204 ORTHO05D006037 3.6e-153 546.2 682 49.6
TPR.G28067 Trifolium pratense HOM05D005204 ORTHO05D006037 6.8e-152 542.0 638 51.3
THA.LOC104820287 Tarenaya hassleriana HOM05D005204 ORTHO05D006037 1.2e-151 541.2 692 49.0
Aqoxy5G00784 Aquilegia oxysepala HOM05D005204 ORTHO05D006037 2.6e-151 540.0 635 51.3
VMungo1309G0885 Vigna mungo HOM05D005204 ORTHO05D006037 9.8e-151 538.1 717 47.8
Glyma.09G042300 Glycine max HOM05D005204 ORTHO05D006037 1.7e-150 537.3 705 47.4
Glyma.15G150700 Glycine max HOM05D005204 ORTHO05D006037 2.2e-150 537.0 704 47.7
BcaB06g25769 Brassica carinata HOM05D005204 ORTHO05D006037 2.9e-150 536.6 670 50.0
A05p32870 Brassica napus HOM05D005204 ORTHO05D006037 5.4e-149 532.3 670 48.7
Sp3g15000 Schrenkiella parvula HOM05D005204 ORTHO05D006037 7.1e-149 531.9 674 49.1
AT3G16730 Arabidopsis thaliana HOM05D005204 ORTHO05D006037 9.2e-149 531.6 684 48.1
BraA05t22110Z Brassica rapa HOM05D005204 ORTHO05D006037 1.2e-148 531.2 670 48.5
AL3G29660 Arabidopsis lyrata HOM05D005204 ORTHO05D006037 2.7e-148 530.0 688 48.3
BcaC05g28856 Brassica carinata HOM05D005204 ORTHO05D006037 1.3e-147 527.7 672 49.0
Thhalv10020220m.g Eutrema salsugineum HOM05D005204 ORTHO05D006037 3.9e-147 526.2 687 48.8
Eucgr.H03961 Eucalyptus grandis HOM05D005204 ORTHO05D006037 8.6e-147 525.0 705 47.5
Carub.0003s1646 Capsella rubella HOM05D005204 ORTHO05D006037 1.1e-146 524.6 694 47.6
Medtr2g436080 Medicago truncatula HOM05D005204 ORTHO05D006037 1.5e-146 524.2 634 49.7
Sed0015514 Sechium edule HOM05D005204 ORTHO05D006037 9.5e-146 521.5 691 47.5
C05p49580 Brassica napus HOM05D005204 ORTHO05D006037 4.7e-145 519.2 672 48.1
BolC5t33716H Brassica oleracea HOM05D005204 ORTHO05D006037 6.2e-145 518.8 672 48.1
PSO832G0069 Papaver somniferum HOM05D005204 ORTHO05D006037 3.2e-141 506.5 723 46.2
PSO210G5425 Papaver somniferum HOM05D005204 ORTHO05D006037 4.1e-141 506.1 717 46.6
Phvul.009G250500 Phaseolus vulgaris HOM05D005204 ORTHO05D006037 2.1e-140 503.8 741 45.3
Manes.03G198500 Manihot esculenta HOM05D005204 ORTHO05D006037 3.5e-140 503.1 616 49.7
A01p37560 Brassica napus HOM05D005204 ORTHO05D006037 3.0e-139 500.0 668 48.2
BraA01t03817Z Brassica rapa HOM05D005204 ORTHO05D006037 5.1e-139 499.2 668 48.1
Ah.04g153660 Amaranthus hybridus HOM05D005204 ORTHO05D006037 5.6e-138 495.7 695 47.5
AUR62015273 Chenopodium quinoa HOM05D005204 ORTHO05D006037 5.6e-138 495.7 688 47.5
BolC1t04731H Brassica oleracea HOM05D005204 ORTHO05D006037 1.2e-137 494.6 674 47.9
C01p47610 Brassica napus HOM05D005204 ORTHO05D006037 2.8e-137 493.4 675 48.0
AUR62018070 Chenopodium quinoa HOM05D005204 ORTHO05D006037 8.9e-136 488.4 735 45.2
Aa31LG8G3820 Aethionema arabicum HOM05D005204 ORTHO05D006037 1.4e-133 481.1 678 47.2
BcaC09g48627 Brassica carinata HOM05D005204 ORTHO05D006037 5.4e-133 479.2 659 48.3
DCAR_030505 Daucus carota HOM05D005204 ORTHO05D006037 1.6e-132 477.6 641 46.8
ATR0693G386 Amborella trichopoda HOM05D005204 ORTHO05D006037 5.1e-131 472.6 683 43.8
MELO3C010685.2 Cucumis melo HOM05D005204 ORTHO05D006037 4.3e-130 469.5 622 47.1
ClCG08G017750 Citrullus lanatus HOM05D005204 ORTHO05D006037 2.1e-129 467.2 613 47.1
Zm00001eb322750 Zea mays HOM05D005204 ORTHO05D006037 3.4e-127 459.9 688 44.6
CsaV3_7G000690 Cucumis sativus L. HOM05D005204 ORTHO05D006037 2.3e-123 447.2 632 44.1
HPP92_012404 Vanilla planifolia HOM05D005204 ORTHO05D006037 2.3e-123 447.2 681 44.1
DCAR_023300 Daucus carota HOM05D005204 ORTHO05D006037 3.0e-123 446.8 649 44.8
SHI00244 Sapria himalayana HOM05D005204 ORTHO05D006037 1.1e-120 438.3 767 41.2
CsaV3_2G024870 Cucumis sativus L. HOM05D005204 ORTHO05D006037 9.0e-120 435.3 613 45.4
CDE05G2961 Ceratophyllum demersum HOM05D005204 ORTHO05D006037 4.0e-112 409.8 690 40.9
Nn3g19294 Nelumbo nucifera HOM05D005204 ORTHO05D006037 6.5e-110 402.5 637 41.9
Os07g0517300 Oryza sativa ssp. japonica HOM05D005204 ORTHO05D006037 6.3e-105 386.0 664 41.3
SEGI_08509 Sequoiadendron giganteum HOM05D005204 ORTHO05D006037 2.3e-91 340.9 702 36.9
CARHR091990 Cardamine hirsuta HOM05D005204 ORTHO05D006037 5.1e-91 339.7 446 48.0
TAR362G0889 Trochodendron aralioides HOM05D005204 ORTHO05D006037 1.5e-90 338.2 504 45.6
Zm00001eb106060 Zea mays HOM05D005204 ORTHO05D006037 5.7e-82 309.7 584 37.3
Mapoly0137s0008 Marchantia polymorpha HOM05D005204 ORTHO05D006037 1.5e-74 285.0 728 34.5
unitig_749.g14080 Utricularia gibba HOM05D005204 ORTHO05D006037 7.0e-72 276.2 674 32.9
SMO367G0335 Selaginella moellendorffii HOM05D005204 ORTHO05D006037 4.7e-68 263.5 671 33.4
Dinv44351 Davidia involucrata HOM05D005204 ORTHO05D006037 1.1e-61 242.3 669 32.4
TAR624G0487 Trochodendron aralioides HOM05D005204 ORTHO05D006037 1.9e-53 214.9 327 43.1
CARHR091980 Cardamine hirsuta HOM05D005204 ORTHO05D006037 9.8e-50 202.6 224 51.8
Actinidia13388 Actinidia chinensis HOM05D005204 ORTHO05D006037 1.8e-48 198.4 206 55.8
ATR0693G078 Amborella trichopoda HOM05D005204 ORTHO05D006037 5.8e-42 176.8 222 46.8
TAR624G0737 Trochodendron aralioides HOM05D005204 ORTHO05D006037 3.5e-39 167.5 171 55.0
CBR_g38039 Chara braunii HOM05D005204 ORTHO05D006037 4.6e-39 167.2 773 27.3
AagrBONN_evm.TU.Sc2ySwM_340.303 Anthoceros agrestis HOM05D005204 ORTHO05D006037 1.9e-37 161.8 517 30.8
Dinv29725 Davidia involucrata HOM05D005204 ORTHO05D006037 2.0e-34 151.8 104 79.8
PGR004G0772 Punica granatum HOM05D005204 ORTHO05D006037 3.0e-30 137.9 119 60.5
DCAR_031703 Daucus carota HOM05D005204 ORTHO05D006037 5.4e-24 117.1 105 55.2
PRCOL_00000998 Prasinoderma coloniale HOM05D005204 ORTHO05D006037 6.0e-23 113.6 637 25.0
Manes.17G118669 Manihot esculenta HOM05D005204 ORTHO05D006037 1.5e-21 109.0 141 45.4
Cre09.g408900 Chlamydomonas reinhardtii HOM05D005204 ORTHO05D006037 6.2e-12 77.0 91 46.2
Zm00001eb139240 Zea mays HOM05D001287 ORTHO05D006037 2.2e-09 68.6 59 55.9
ATR0296G001 Amborella trichopoda HOM05D005204 ORTHO05D006037 8.4e-09 66.6 77 50.6
Atru.chr3.336 Acer truncatum HOM05D004186 ORTHO05D006037 1.6e-07 62.4 65 47.7
Zm00001eb009560 Zea mays HOM05D005204 ORTHO05D006037 4.6e-07 60.8 110 36.4
Zm00001eb046380 Zea mays HOM05D005204 ORTHO05D006037 4.6e-07 60.8 110 36.4
Zm00001eb219840 Zea mays HOM05D005204 ORTHO05D006037 4.6e-07 60.8 110 36.4
TAR362G0435 Trochodendron aralioides HOM05D005204 ORTHO05D006037 7.9e-07 60.1 76 43.4
CSS0012295 Camellia sinensis var. sinensis HOM05D005204 ORTHO05D006037 3.0e-06 58.2 98 38.8


User provided reference genes

Program Settings