Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G484.32 Capsicum annuum HOM05D003821 ORTHO05D004449 6.4e-76 287.3 145 100.0
Nitab4.5_0000191g0110 Nicotiana tabacum HOM05D003821 ORTHO05D004449 5.8e-21 104.8 144 50.7
Nitab4.5_0004438g0100 Nicotiana tabacum HOM05D003821 ORTHO05D004449 1.7e-20 103.2 133 56.4
vmacro08148 Vaccinium macrocarpon HOM05D003821 ORTHO05D004449 1.0e-17 94.0 155 45.8
SGA_v2.0_scaffold91G27999 Striga asiatica HOM05D003821 ORTHO05D004449 2.3e-17 92.8 131 48.9
CAN.G185.14 Capsicum annuum HOM05D003821 ORTHO05D004449 6.7e-17 91.3 133 47.4
Nitab4.5_0003546g0070 Nicotiana tabacum HOM05D003821 ORTHO05D004449 1.5e-16 90.1 135 49.6
PGSC0003DMG400022856 Solanum tuberosum HOM05D003821 ORTHO05D004449 1.5e-16 90.1 134 52.2
Rhsim02G0009100 Rhododendron simsii HOM05D003821 ORTHO05D004449 1.3e-15 87.0 132 50.8
Atru.chr4.2835 Acer truncatum HOM05D003821 ORTHO05D004449 3.7e-15 85.5 137 48.2
Nitab4.5_0000570g0120 Nicotiana tabacum HOM05D003821 ORTHO05D004449 1.1e-14 84.0 131 45.8
Oeu026313.1 Olea europaea HOM05D003821 ORTHO05D004449 1.1e-14 84.0 132 48.5
Hma1.2p1_0078F.1_g040550 Hydrangea macrophylla HOM05D003821 ORTHO05D004449 1.8e-14 83.2 132 47.7
Rhsim04G0221500 Rhododendron simsii HOM05D003821 ORTHO05D004449 5.3e-14 81.6 154 42.2
Haze_01204 Corylus avellana HOM05D003821 ORTHO05D004449 2.6e-13 79.3 142 42.3
Oeu027727.1 Olea europaea HOM05D003821 ORTHO05D004449 4.5e-13 78.6 130 46.9
SalBow2G1159 Salvia bowleyana HOM05D003821 ORTHO05D004449 1.0e-12 77.4 130 46.9
Medtr1g088760 Medicago truncatula HOM05D003821 ORTHO05D004449 1.7e-12 76.6 129 42.6
MSTRG.3917 Avicennia marina HOM05D003821 ORTHO05D004449 2.2e-12 76.3 134 45.5
TPR.G33980 Trifolium pratense HOM05D003821 ORTHO05D004449 2.9e-12 75.9 131 43.5
QL10p053326 Quercus lobata HOM05D003821 ORTHO05D004449 6.5e-12 74.7 131 45.0
QL10p054532 Quercus lobata HOM05D003821 ORTHO05D004449 6.5e-12 74.7 131 45.0
Sed0001615 Sechium edule HOM05D003821 ORTHO05D004449 8.5e-12 74.3 132 44.7
TPR.G9594 Trifolium pratense HOM05D003821 ORTHO05D004449 1.9e-11 73.2 134 44.0
MSTRG.24794 Avicennia marina HOM05D003821 ORTHO05D004449 2.5e-11 72.8 131 43.5
EL10Ac7g17441 Beta vulgaris HOM05D003821 ORTHO05D004449 4.2e-11 72.0 138 37.7
Gorai.004G142200 Gossypium raimondii HOM05D003821 ORTHO05D004449 5.5e-11 71.6 127 42.5
Migut.G00164 Erythranthe guttata HOM05D003821 ORTHO05D004449 7.2e-11 71.2 130 43.8
BraA08t33190Z Brassica rapa HOM05D003821 ORTHO05D004449 9.4e-11 70.9 131 41.2
Haze_04896 Corylus avellana HOM05D003821 ORTHO05D004449 2.1e-10 69.7 133 45.1
Manes.15G012400 Manihot esculenta HOM05D003821 ORTHO05D004449 2.1e-10 69.7 132 43.2
CSS0027872 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 2.7e-10 69.3 122 44.3
SGA_v2.0_scaffold147G36288 Striga asiatica HOM05D003821 ORTHO05D004449 3.6e-10 68.9 130 43.1
TWI09G0102 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 4.6e-10 68.6 128 43.0
arahy.Tifrunner.gnm1.ann1.LH51N9 Arachis hypogaea HOM05D003821 ORTHO05D004449 1.0e-09 67.4 121 44.6
COL.COLO4_13871 Corchorus olitorius HOM05D003821 ORTHO05D004449 1.0e-09 67.4 126 43.7
Sabra08G0153500 Salix brachista HOM05D003821 ORTHO05D004449 1.0e-09 67.4 135 44.4
FAN07G0841 Fragaria x ananassa HOM05D003821 ORTHO05D004449 1.8e-09 66.6 131 42.0
SGA_v2.0_scaffold428G51522 Striga asiatica HOM05D003821 ORTHO05D004449 1.8e-09 66.6 130 41.5
arahy.Tifrunner.gnm1.ann1.UD53LE Arachis hypogaea HOM05D003821 ORTHO05D004449 2.3e-09 66.2 121 43.8
DCAR_013986 Daucus carota HOM05D003821 ORTHO05D004449 2.3e-09 66.2 132 44.7
Cpa.g.sc9.208 Carica papaya HOM05D003821 ORTHO05D004449 3.0e-09 65.9 125 41.6
Os06g0274000 Oryza sativa ssp. japonica HOM05D003821 ORTHO05D004449 3.0e-09 65.9 135 39.3
VMungo1309G1076 Vigna mungo HOM05D003821 ORTHO05D004449 3.0e-09 65.9 124 39.5
FAN20G2567 Fragaria x ananassa HOM05D000897 ORTHO05D000716 3.9e-09 65.5 132 40.2
vmacro15236 Vaccinium macrocarpon HOM05D003821 ORTHO05D004449 3.9e-09 65.5 50 78.0
BraA01t02079Z Brassica rapa HOM05D000802 ORTHO05D013138 5.1e-09 65.1 140 37.1
FAN24G2279 Fragaria x ananassa HOM05D003821 ORTHO05D004449 5.1e-09 65.1 132 40.2
C07p47410 Brassica napus HOM05D003821 ORTHO05D004449 6.7e-09 64.7 131 42.0
FAN15G2810 Fragaria x ananassa HOM05D003821 ORTHO05D004449 6.7e-09 64.7 131 39.7
Psat3g022560 Pisum sativum HOM05D003821 ORTHO05D004449 6.7e-09 64.7 122 41.8
CiPaw.07G106400 Carya illinoinensis HOM05D003821 ORTHO05D004449 8.8e-09 64.3 125 40.8
RcHm_v2.0_Chr6g0293541 Rosa chinensis HOM05D003821 ORTHO05D004449 8.8e-09 64.3 135 39.3
Ah.04g153550 Amaranthus hybridus HOM05D003821 ORTHO05D004449 1.1e-08 63.9 131 35.9
FAN12G1096 Fragaria x ananassa HOM05D003821 ORTHO05D004449 1.1e-08 63.9 134 40.3
TWI53G1984 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 1.1e-08 63.9 128 41.4
Ca_10352_v3 Cicer arietinum L. HOM05D003821 ORTHO05D004449 1.5e-08 63.5 132 40.9
Carub.0007s2585 Capsella rubella HOM05D003821 ORTHO05D004449 2.0e-08 63.2 120 39.2
Ciclev10007067m.g Citrus clementina HOM05D003821 ORTHO05D004449 2.0e-08 63.2 126 41.3
Actinidia32231 Actinidia chinensis HOM05D003821 ORTHO05D004449 2.5e-08 62.8 132 41.7
AUR62008616 Chenopodium quinoa HOM05D003821 ORTHO05D004449 2.5e-08 62.8 130 37.7
FAN27G2508 Fragaria x ananassa HOM05D003821 ORTHO05D004449 2.5e-08 62.8 132 38.6
A03p49340 Brassica napus HOM05D003821 ORTHO05D004449 3.3e-08 62.4 127 40.9
CiPaw.08G097300 Carya illinoinensis HOM05D003821 ORTHO05D004449 3.3e-08 62.4 132 38.6
Sc24g0003850 Simmondsia chinensis HOM05D000714 ORTHO05D000544 3.3e-08 62.4 132 37.9
CARHR290310 Cardamine hirsuta HOM05D003821 ORTHO05D004449 5.7e-08 61.6 130 39.2
AT4G15802 Arabidopsis thaliana HOM05D003821 ORTHO05D004449 7.4e-08 61.2 130 39.2
DCAR_002813 Daucus carota HOM05D003821 ORTHO05D004449 9.7e-08 60.8 132 40.2
AL7G39490 Arabidopsis lyrata HOM05D003821 ORTHO05D004449 1.7e-07 60.1 130 38.5
Aa31LG10G6300 Aethionema arabicum HOM05D003821 ORTHO05D004449 2.2e-07 59.7 137 38.7
AUR62033168 Chenopodium quinoa HOM05D003821 ORTHO05D004449 2.2e-07 59.7 130 36.9
Peaxi162Scf00048g00209 Petunia axillaris HOM05D003821 ORTHO05D004449 2.2e-07 59.7 122 40.2
FAN17G0959 Fragaria x ananassa HOM05D003821 ORTHO05D004449 3.7e-07 58.9 125 40.8
Hund20554 Selenicereus undatus HOM05D003821 ORTHO05D004449 4.8e-07 58.5 143 34.3
A01p21700 Brassica napus HOM05D000802 ORTHO05D013138 8.2e-07 57.8 140 35.0
Medtr7g108610 Medicago truncatula HOM05D003821 ORTHO05D004449 8.2e-07 57.8 50 62.0
Thecc.04G284600 Theobroma cacao HOM05D003821 ORTHO05D004449 8.2e-07 57.8 128 37.5
Phvul.009G247900 Phaseolus vulgaris HOM05D003821 ORTHO05D004449 1.1e-06 57.4 108 39.8
BcaC06g33446 Brassica carinata HOM05D003821 ORTHO05D004449 1.4e-06 57.0 127 39.4
ATR0580G132 Amborella trichopoda HOM05D003821 ORTHO05D004449 2.4e-06 56.2 123 37.4
unitig_32.g10644 Utricularia gibba HOM05D003821 ORTHO05D004449 2.4e-06 56.2 39 76.9
BcaC07g37933 Brassica carinata HOM05D003821 ORTHO05D004449 5.3e-06 55.1 131 37.4
Glyma.03G213100 Glycine max HOM05D003821 ORTHO05D004449 5.3e-06 55.1 68 55.9
SalBow5G0239 Salvia bowleyana HOM05D007625 ORTHO05D009738 5.3e-06 55.1 33 81.8
RcHm_v2.0_Chr4g0422221 Rosa chinensis HOM05D003821 ORTHO05D004449 6.9e-06 54.7 46 71.7


User provided reference genes

Program Settings