Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G484.113 Capsicum annuum HOM05D002092 ORTHO05D024780 5.3e-170 600.9 297 100.0
CAN.G3901.1 Capsicum annuum HOM05D002092 ORTHO05D024780 1.4e-50 204.1 98 100.0
CAN.G484.114 Capsicum annuum HOM05D002092 ORTHO05D007041 2.2e-46 190.3 159 66.0
Solyc12g098830.2 Solanum lycopersicum HOM05D002092 ORTHO05D007041 7.0e-45 185.3 159 64.2
Sopen12g033570 Solanum pennellii HOM05D002092 ORTHO05D007041 1.2e-44 184.5 159 64.2
Nitab4.5_0000978g0080 Nicotiana tabacum HOM05D002092 ORTHO05D007041 2.6e-44 183.3 159 62.9
Haze_00759 Corylus avellana HOM05D002092 ORTHO05D007041 5.9e-44 182.2 114 77.2
Nitab4.5_0002466g0050 Nicotiana tabacum HOM05D002092 ORTHO05D007041 7.7e-44 181.8 159 62.3
Peaxi162Scf00323g00822 Petunia axillaris HOM05D002092 ORTHO05D007041 1.3e-43 181.0 152 63.2
Cfa015737 Carpinus fangiana HOM05D002092 ORTHO05D007041 2.2e-43 180.3 101 85.1
DCAR_023413 Daucus carota HOM05D002092 ORTHO05D007041 1.6e-41 174.1 114 71.9
Dinv01476 Davidia involucrata HOM05D002092 ORTHO05D007041 2.0e-39 167.2 161 55.3
Oeu002202.1 Olea europaea HOM05D002092 ORTHO05D007041 9.7e-39 164.9 159 56.0
PGR004G1753 Punica granatum HOM05D002092 ORTHO05D007041 3.7e-38 162.9 161 55.3
FvH4_4g21590 Fragaria vesca HOM05D002092 ORTHO05D007041 4.8e-38 162.5 154 57.1
FAN07G0083 Fragaria x ananassa HOM05D002092 ORTHO05D007041 4.8e-38 162.5 154 57.1
FAN12G0996 Fragaria x ananassa HOM05D002092 ORTHO05D007041 4.8e-38 162.5 154 57.1
FAN17G1215 Fragaria x ananassa HOM05D002092 ORTHO05D007041 4.8e-38 162.5 154 57.1
EL10Ac3g06236 Beta vulgaris HOM05D002092 ORTHO05D007041 1.1e-37 161.4 191 49.7
Glyma.13G119100 Glycine max HOM05D002092 ORTHO05D007041 1.1e-37 161.4 154 57.1
Phvul.003G122300 Phaseolus vulgaris HOM05D002092 ORTHO05D007041 1.1e-37 161.4 155 56.8
ClCG06G004150 Citrullus lanatus HOM05D002092 ORTHO05D007041 1.4e-37 161.0 153 55.6
Glyma.17G041100 Glycine max HOM05D002092 ORTHO05D007041 1.4e-37 161.0 154 57.1
MELO3C021226.2 Cucumis melo HOM05D002092 ORTHO05D007041 1.8e-37 160.6 153 55.6
arahy.Tifrunner.gnm1.ann1.06DG1T Arachis hypogaea HOM05D002092 ORTHO05D007041 2.4e-37 160.2 154 57.1
arahy.Tifrunner.gnm1.ann1.GJZ8MD Arachis hypogaea HOM05D002092 ORTHO05D007041 2.4e-37 160.2 154 57.1
AUR62002541 Chenopodium quinoa HOM05D002092 ORTHO05D007041 2.4e-37 160.2 156 55.1
CsaV3_6G000280 Cucumis sativus L. HOM05D002092 ORTHO05D007041 2.4e-37 160.2 224 45.1
RcHm_v2.0_Chr4g0427701 Rosa chinensis HOM05D002092 ORTHO05D007041 2.4e-37 160.2 154 57.1
CANSAT78G1398 Cannabis sativa HOM05D002092 ORTHO05D007041 3.1e-37 159.8 153 56.2
CiPaw.01G128500 Carya illinoinensis HOM05D002092 ORTHO05D007041 3.1e-37 159.8 154 55.8
Cc03_g00070 Coffea canephora HOM05D002092 ORTHO05D007041 3.1e-37 159.8 159 54.7
Lalb_Chr12g0200551 Lupinus albus HOM05D002092 ORTHO05D007041 3.1e-37 159.8 141 61.0
COL.COLO4_34508 Corchorus olitorius HOM05D002092 ORTHO05D007041 4.1e-37 159.5 154 54.5
Sed0019064 Sechium edule HOM05D002092 ORTHO05D007041 4.1e-37 159.5 154 54.5
Ca_21373_v3 Cicer arietinum L. HOM05D002092 ORTHO05D007041 5.3e-37 159.1 153 54.9
SGA_v2.0_scaffold157G37393 Striga asiatica HOM05D002092 ORTHO05D007041 5.3e-37 159.1 159 52.8
Eucgr.H04128 Eucalyptus grandis HOM05D002092 ORTHO05D007041 7.0e-37 158.7 154 54.5
Medtr4g123980 Medicago truncatula HOM05D002092 ORTHO05D007041 7.0e-37 158.7 153 54.2
Thecc.04G313900 Theobroma cacao HOM05D002092 ORTHO05D007041 9.1e-37 158.3 154 53.9
Cpa.g.sc146.15 Carica papaya HOM05D002092 ORTHO05D007041 1.2e-36 157.9 140 59.3
Hma1.2p1_1449F.1_g284065 Hydrangea macrophylla HOM05D002092 ORTHO05D007041 1.6e-36 157.5 159 53.5
Prupe.1G104500 Prunus persica HOM05D002092 ORTHO05D007041 1.6e-36 157.5 154 55.2
QL06p014383 Quercus lobata HOM05D002092 ORTHO05D007041 2.0e-36 157.1 154 53.9
TPR.G12594 Trifolium pratense HOM05D002092 ORTHO05D007041 2.7e-36 156.8 153 53.6
vmacro08015 Vaccinium macrocarpon HOM05D002092 ORTHO05D007041 2.7e-36 156.8 154 55.2
AUR62023651 Chenopodium quinoa HOM05D002092 ORTHO05D007041 3.5e-36 156.4 142 57.7
Psat4g021200 Pisum sativum HOM05D002092 ORTHO05D007041 3.5e-36 156.4 153 53.6
Potri.008G205900 Populus trichocarpa HOM05D002092 ORTHO05D007041 3.5e-36 156.4 154 55.2
VMungo1215G0636 Vigna mungo HOM05D002092 ORTHO05D007041 3.5e-36 156.4 154 55.2
Ciclev10004546m.g Citrus clementina HOM05D002092 ORTHO05D007041 4.5e-36 156.0 154 55.2
Gohir.A02G059000 Gossypium hirsutum HOM05D002092 ORTHO05D007041 5.9e-36 155.6 154 53.2
Gohir.D02G064700 Gossypium hirsutum HOM05D002092 ORTHO05D007041 5.9e-36 155.6 154 53.2
Gorai.005G073300 Gossypium raimondii HOM05D002092 ORTHO05D007041 5.9e-36 155.6 154 53.2
Lalb_Chr07g0181631 Lupinus albus HOM05D002092 ORTHO05D007041 5.9e-36 155.6 141 58.9
Rhsim04G0249000 Rhododendron simsii HOM05D002092 ORTHO05D007041 5.9e-36 155.6 143 58.7
Atru.chr4.3168 Acer truncatum HOM05D002092 ORTHO05D007041 7.7e-36 155.2 154 54.5
CiPaw.02G068900 Carya illinoinensis HOM05D002092 ORTHO05D007041 7.7e-36 155.2 154 53.9
Hma1.2p1_2234F.1_g317640 Hydrangea macrophylla HOM05D002092 ORTHO05D007041 7.7e-36 155.2 156 53.2
THA.LOC104818932 Tarenaya hassleriana HOM05D002092 ORTHO05D007041 7.7e-36 155.2 141 58.9
CSS0002469 Camellia sinensis var. sinensis HOM05D002092 ORTHO05D007041 1.0e-35 154.8 216 45.4
MSTRG.10185 Avicennia marina HOM05D002092 ORTHO05D007041 1.3e-35 154.5 160 51.2
Lj6A702G44 Lonicera japonica HOM05D002092 ORTHO05D007041 1.3e-35 154.5 162 53.1
GSVIVG01017695001 Vitis vinifera HOM05D002092 ORTHO05D007041 1.7e-35 154.1 141 57.4
Prupe.1G104000 Prunus persica HOM05D002092 ORTHO05D007041 2.2e-35 153.7 154 53.9
Sabra08G0149600 Salix brachista HOM05D002092 ORTHO05D007041 2.2e-35 153.7 154 54.5
Potri.010G002900 Populus trichocarpa HOM05D002092 ORTHO05D007041 2.9e-35 153.3 154 54.5
Duzib212G0591 Durio zibethinus HOM05D002092 ORTHO05D007041 3.8e-35 152.9 153 52.3
Lj4g0022953 Lotus japonicus HOM05D002092 ORTHO05D007041 6.5e-35 152.1 153 54.9
MD13G1140600 Malus domestica HOM05D002092 ORTHO05D007041 8.5e-35 151.8 154 53.9
TAR636G2233 Trochodendron aralioides HOM05D001914 ORTHO05D007041 8.5e-35 151.8 154 53.2
Dinv29499 Davidia involucrata HOM05D002092 ORTHO05D000562 1.1e-34 151.4 141 58.2
THA.LOC104827346 Tarenaya hassleriana HOM05D002092 ORTHO05D007041 1.1e-34 151.4 141 56.7
Nn4g25366 Nelumbo nucifera HOM05D002092 ORTHO05D007041 1.5e-34 151.0 158 51.9
Migut.G00901 Erythranthe guttata HOM05D002092 ORTHO05D007041 1.9e-34 150.6 221 43.0
Aqoxy2G02499 Aquilegia oxysepala HOM05D002092 ORTHO05D007041 3.2e-34 149.8 154 50.6
Lsat_1_v5_gn_6_118301 Lactuca sativa HOM05D002092 ORTHO05D007041 3.2e-34 149.8 146 54.1
Manes.03G212300 Manihot esculenta HOM05D002092 ORTHO05D007041 3.2e-34 149.8 147 53.1
Hund22644 Selenicereus undatus HOM05D002092 ORTHO05D007041 3.2e-34 149.8 212 44.8
Thhalv10003802m.g Eutrema salsugineum HOM05D002092 ORTHO05D007041 4.2e-34 149.4 145 55.2
HanXRQChr05g0148981 Helianthus annuus HOM05D002092 ORTHO05D007041 4.2e-34 149.4 159 50.9
A02p37830 Brassica napus HOM05D002092 ORTHO05D007041 5.5e-34 149.1 145 54.5
BolC2t11769H Brassica oleracea HOM05D002092 ORTHO05D007041 5.5e-34 149.1 145 54.5
BraA02t08765Z Brassica rapa HOM05D002092 ORTHO05D007041 5.5e-34 149.1 145 54.5
MD16G1135200 Malus domestica HOM05D002092 ORTHO05D007041 5.5e-34 149.1 161 51.6
PSO761G0176 Papaver somniferum HOM05D002092 ORTHO05D007041 5.5e-34 149.1 141 54.6
BcaC03g17690 Brassica carinata HOM05D002092 ORTHO05D007041 9.4e-34 148.3 145 54.5
C02p56990 Brassica napus HOM05D002092 ORTHO05D007041 9.4e-34 148.3 145 54.5
Actinidia01069 Actinidia chinensis HOM05D002092 ORTHO05D007041 1.2e-33 147.9 223 43.5
Actinidia18512 Actinidia chinensis HOM05D002092 ORTHO05D007041 1.2e-33 147.9 223 43.5
Aa31sc279G30 Aethionema arabicum HOM05D002092 ORTHO05D007041 1.2e-33 147.9 134 56.0
Sabra10G0002300 Salix brachista HOM05D002092 ORTHO05D007041 1.2e-33 147.9 154 52.6
BcaB07g34209 Brassica carinata HOM05D002092 ORTHO05D007041 2.7e-33 146.7 145 53.8
A06p38670 Brassica napus HOM05D002092 ORTHO05D007041 2.7e-33 146.7 145 53.8
ECA246G4720 Erigeron canadensis HOM05D002092 ORTHO05D007041 2.7e-33 146.7 151 51.7
AT5G48960 Arabidopsis thaliana HOM05D002092 ORTHO05D007041 3.6e-33 146.4 139 54.7
Carub.0008s0871 Capsella rubella HOM05D002092 ORTHO05D007041 3.6e-33 146.4 139 54.7
MBI18_g10381_MAGBIO Magnolia biondii HOM05D002092 ORTHO05D007041 3.6e-33 146.4 154 51.9
CARHR284570 Cardamine hirsuta HOM05D002092 ORTHO05D007041 4.7e-33 146.0 139 54.7
PSO210G1155 Papaver somniferum HOM05D002092 ORTHO05D007041 4.7e-33 146.0 141 53.9
Sp2g19340 Schrenkiella parvula HOM05D002092 ORTHO05D007041 6.1e-33 145.6 134 54.5
AL8G22200 Arabidopsis lyrata HOM05D002092 ORTHO05D007041 1.0e-32 144.8 139 54.0
VMungo1309G2400 Vigna mungo HOM05D002092 ORTHO05D007041 1.4e-32 144.4 142 53.5
BolC7t44483H Brassica oleracea HOM05D002092 ORTHO05D007041 1.8e-32 144.1 145 52.4
BraA06t26781Z Brassica rapa HOM05D002092 ORTHO05D007041 1.8e-32 144.1 145 53.1
TAR633G1005 Trochodendron aralioides HOM05D002092 ORTHO05D007041 1.8e-32 144.1 154 51.3
Glyma.15G187000 Glycine max HOM05D002092 ORTHO05D007041 2.3e-32 143.7 140 57.1
C07p39590 Brassica napus HOM05D002092 ORTHO05D007041 4.0e-32 142.9 145 51.7
BcaC06g30737 Brassica carinata HOM05D002092 ORTHO05D007041 5.2e-32 142.5 141 53.2
ATR0796G082 Amborella trichopoda HOM05D002092 ORTHO05D007041 6.8e-32 142.1 146 51.4
HPP92_001181 Vanilla planifolia HOM05D002092 ORTHO05D007041 5.7e-31 139.0 156 48.7
Sc13g0008020 Simmondsia chinensis HOM05D002092 ORTHO05D007041 1.3e-30 137.9 88 72.7
CDE02G3170 Ceratophyllum demersum HOM05D002092 ORTHO05D007041 1.7e-30 137.5 160 48.8
Phvul.009G220400 Phaseolus vulgaris HOM05D002092 ORTHO05D007041 1.7e-30 137.5 92 70.7
Os01g0250900 Oryza sativa ssp. japonica HOM05D002092 ORTHO05D007041 2.8e-30 136.7 155 48.4
SalBow8G4005 Salvia bowleyana HOM05D002092 ORTHO05D007041 3.7e-30 136.3 69 88.4
AagrBONN_evm.TU.Sc2ySwM_117.1377 Anthoceros agrestis HOM05D002092 ORTHO05D007041 2.4e-29 133.7 147 47.6
Pp3c8_7530 Physcomitrium patens HOM05D002092 ORTHO05D007041 1.6e-28 131.0 135 51.1
Rhsim04G0249600 Rhododendron simsii HOM05D002092 ORTHO05D007041 2.0e-28 130.6 81 74.1
CAN.G1744.9 Capsicum annuum HOM05D000011 ORTHO05D001721 4.5e-28 129.4 74 85.1
Mapoly0044s0089 Marchantia polymorpha HOM05D002092 ORTHO05D007041 4.5e-28 129.4 134 48.5
Pp3c3_29260 Physcomitrium patens HOM05D002092 ORTHO05D007041 1.3e-27 127.9 135 49.6
SMO118G0340 Selaginella moellendorffii HOM05D002092 ORTHO05D007041 1.3e-27 127.9 132 49.2
CAN.G712.2 Capsicum annuum HOM05D000138 ORTHO05D000078 3.3e-26 123.2 137 53.3
SEGI_14302 Sequoiadendron giganteum HOM05D002092 ORTHO05D007041 4.2e-26 122.9 76 73.7
CBR_g36889 Chara braunii HOM05D002092 ORTHO05D007041 3.0e-24 116.7 75 66.7
CAN.G1139.4 Capsicum annuum HOM05D000402 ORTHO05D011077 6.8e-24 115.5 137 52.6
Cre13.g573150 Chlamydomonas reinhardtii HOM05D002092 ORTHO05D007041 8.9e-24 115.2 76 67.1
CAN.G637.13 Capsicum annuum HOM05D000004 ORTHO05D000002 1.2e-23 114.8 140 50.0
CAN.G2793.1 Capsicum annuum HOM05D000673 ORTHO05D011077 1.3e-22 111.3 138 49.3
CAN.G126.64 Capsicum annuum HOM05D000025 ORTHO05D011077 2.2e-22 110.5 137 50.4
CAN.G968.14 Capsicum annuum HOM05D000673 ORTHO05D011077 2.7e-20 103.6 138 47.1
CAN.G453.3 Capsicum annuum HOM05D000004 ORTHO05D000002 5.9e-20 102.4 127 48.0
CAN.G126.70 Capsicum annuum HOM05D000025 ORTHO05D011077 9.5e-18 95.1 132 45.5
CAN.G710.21 Capsicum annuum HOM05D000009 ORTHO05D011077 4.7e-17 92.8 121 48.8
CAN.G997.1 Capsicum annuum HOM05D000067 ORTHO05D000280 4.7e-17 92.8 72 66.7
Migut.C00318 Erythranthe guttata HOM05D002092 ORTHO05D007041 1.0e-16 91.7 176 40.3
Lsat_1_v5_gn_3_136841 Lactuca sativa HOM05D002092 ORTHO05D024780 1.0e-16 91.7 47 83.0
CAN.G668.14 Capsicum annuum HOM05D000064 ORTHO05D011077 1.8e-16 90.9 117 51.3
CAN.G4.4 Capsicum annuum HOM05D000190 ORTHO05D011077 6.8e-16 89.0 126 43.7
CAN.G86.10 Capsicum annuum HOM05D004198 ORTHO05D006470 1.5e-15 87.8 127 46.5
CAN.G126.61 Capsicum annuum HOM05D000025 ORTHO05D011077 7.5e-15 85.5 137 44.5
CAN.G1579.27 Capsicum annuum HOM05D000673 ORTHO05D011077 1.6e-12 77.8 116 46.6
CAN.G391.4 Capsicum annuum HOM05D001438 ORTHO05D001336 1.6e-12 77.8 120 43.3
CAN.G424.53 Capsicum annuum HOM05D000128 ORTHO05D000059 3.5e-12 76.6 62 67.7
CAN.G65.165 Capsicum annuum HOM05D000004 ORTHO05D000611 1.0e-11 75.1 72 58.3
CAN.G337.168 Capsicum annuum HOM05D000007 ORTHO05D011077 3.0e-11 73.6 106 45.3
CAN.G27.34 Capsicum annuum HOM05D005022 ORTHO05D011077 3.9e-11 73.2 114 41.2
CAN.G575.128 Capsicum annuum HOM05D000673 ORTHO05D011077 6.6e-11 72.4 113 43.4
Glyma.09G079500 Glycine max HOM05D002092 ORTHO05D024780 8.6e-11 72.0 39 76.9
CAN.G407.73 Capsicum annuum HOM05D000541 ORTHO05D000137 1.9e-10 70.9 79 50.6
CAN.G18.20 Capsicum annuum HOM05D000673 ORTHO05D011077 4.7e-09 66.2 114 39.5
CAN.G65.32 Capsicum annuum HOM05D000147 ORTHO05D011077 3.1e-08 63.5 55 63.6
CAN.G1676.2 Capsicum annuum HOM05D000673 ORTHO05D011077 4.0e-08 63.2 40 77.5
CAN.G339.2 Capsicum annuum HOM05D000073 ORTHO05D011077 4.0e-08 63.2 107 42.1
CAN.G738.13 Capsicum annuum HOM05D000015 ORTHO05D011077 8.9e-08 62.0 102 46.1
Lsat_1_v5_gn_1_18740 Lactuca sativa HOM05D002092 ORTHO05D005410 8.9e-08 62.0 73 43.8
CAN.G1982.3 Capsicum annuum HOM05D000017 ORTHO05D011077 4.4e-07 59.7 114 37.7
HanXRQChr02g0039761 Helianthus annuus HOM05D002092 ORTHO05D005410 4.4e-07 59.7 73 42.5
SalBow7G2615 Salvia bowleyana HOM05D002092 ORTHO05D005410 5.8e-07 59.3 79 40.5
HanXRQChr04g0105681 Helianthus annuus HOM05D002092 ORTHO05D005410 7.5e-07 58.9 73 43.8
HanXRQChr04g0105691 Helianthus annuus HOM05D002092 ORTHO05D005410 7.5e-07 58.9 73 43.8
ECA247G0066 Erigeron canadensis HOM05D002092 ORTHO05D005410 9.8e-07 58.5 73 41.1
Eucgr.F01892 Eucalyptus grandis HOM05D002092 ORTHO05D005410 1.3e-06 58.2 79 40.5
PSO210G7256 Papaver somniferum HOM05D002092 ORTHO05D005410 1.3e-06 58.2 79 39.2
PSO731G0029 Papaver somniferum HOM05D002092 ORTHO05D005410 1.3e-06 58.2 79 39.2
PGR083G1162 Punica granatum HOM05D002092 ORTHO05D005410 2.2e-06 57.4 79 39.2
CiPaw.16G058900 Carya illinoinensis HOM05D002092 ORTHO05D005410 2.9e-06 57.0 69 43.5
Ca_13372_v3 Cicer arietinum L. HOM05D002092 ORTHO05D005410 2.9e-06 57.0 80 35.0
Gohir.A06G010100 Gossypium hirsutum HOM05D002092 ORTHO05D005410 2.9e-06 57.0 79 39.2
Gohir.D06G007500 Gossypium hirsutum HOM05D002092 ORTHO05D005410 2.9e-06 57.0 79 39.2
Gorai.010G010200 Gossypium raimondii HOM05D002092 ORTHO05D005410 2.9e-06 57.0 79 39.2
HanXRQChr05g0153601 Helianthus annuus HOM05D002092 ORTHO05D005410 2.9e-06 57.0 79 39.2
Lsat_1_v5_gn_5_27540 Lactuca sativa HOM05D002092 ORTHO05D005410 2.9e-06 57.0 79 39.2
PGSC0003DMG400038346 Solanum tuberosum HOM05D007249 ORTHO05D023158 2.9e-06 57.0 79 43.0
ECA246G1239 Erigeron canadensis HOM05D002092 ORTHO05D005410 3.7e-06 56.6 79 39.2
Lj4C786T3 Lonicera japonica HOM05D002092 ORTHO05D005410 3.7e-06 56.6 79 40.5
CAN.G5.43 Capsicum annuum HOM05D002610 ORTHO05D003612 4.9e-06 56.2 38 73.7
Glyma.17G250700 Glycine max HOM05D002092 ORTHO05D005410 4.9e-06 56.2 79 36.7
Os03g0774300 Oryza sativa ssp. japonica HOM05D002092 ORTHO05D005410 4.9e-06 56.2 79 40.5
Potri.014G196700 Populus trichocarpa HOM05D002092 ORTHO05D005410 4.9e-06 56.2 79 39.2
Medtr1g022260 Medicago truncatula HOM05D002092 ORTHO05D005410 6.4e-06 55.8 80 36.2
Migut.C00738 Erythranthe guttata HOM05D002092 ORTHO05D005410 8.3e-06 55.5 79 40.5
Psat6g008960 Pisum sativum HOM05D002092 ORTHO05D005410 8.3e-06 55.5 80 36.2


User provided reference genes

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