Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G484.104 Capsicum annuum HOM05D000198 ORTHO05D006356 1.1e-69 266.5 134 100.0
CAN.G484.59 Capsicum annuum HOM05D000198 ORTHO05D006356 5.2e-40 167.9 125 73.6
Solyc12g099290.2 Solanum lycopersicum HOM05D000198 ORTHO05D006356 2.0e-39 166.0 125 72.0
Sopen12g033970 Solanum pennellii HOM05D000198 ORTHO05D006356 2.0e-39 166.0 125 72.0
PGSC0003DMG400004698 Solanum tuberosum HOM05D000198 ORTHO05D006356 9.8e-39 163.7 125 70.4
Peaxi162Scf00120g00020 Petunia axillaris HOM05D000198 ORTHO05D006356 5.4e-37 157.9 125 67.2
Migut.G00054 Erythranthe guttata HOM05D000198 ORTHO05D006356 2.7e-36 155.6 125 67.2
CSS0039927 Camellia sinensis var. sinensis HOM05D000198 ORTHO05D006356 1.5e-34 149.8 125 63.2
MD16G1154800 Malus domestica HOM05D000198 ORTHO05D006356 4.3e-34 148.3 125 61.6
SGA_v2.0_scaffold104G30081 Striga asiatica HOM05D000198 ORTHO05D006356 4.3e-34 148.3 125 62.4
CiPaw.02G075200 Carya illinoinensis HOM05D000198 ORTHO05D006356 5.6e-34 147.9 124 62.9
SalBow8G4861 Salvia bowleyana HOM05D000198 ORTHO05D006356 9.5e-34 147.1 125 61.6
Dinv15183 Davidia involucrata HOM05D000198 ORTHO05D006356 1.6e-33 146.4 125 63.2
ECA233G5766 Erigeron canadensis HOM05D000198 ORTHO05D006356 2.8e-33 145.6 129 59.7
Actinidia15605 Actinidia chinensis HOM05D000198 ORTHO05D006356 3.6e-33 145.2 125 62.4
Eucgr.H04040 Eucalyptus grandis HOM05D000198 ORTHO05D006356 3.6e-33 145.2 125 61.6
Manes.15G004800 Manihot esculenta HOM05D000198 ORTHO05D006356 3.6e-33 145.2 129 57.4
Prupe.1G118500 Prunus persica HOM05D000198 ORTHO05D006356 4.7e-33 144.8 125 60.8
Actinidia40374 Actinidia chinensis HOM05D000198 ORTHO05D006356 6.2e-33 144.4 125 62.4
CANSAT78G1506 Cannabis sativa HOM05D000198 ORTHO05D006356 6.2e-33 144.4 125 61.6
Cc03_g00900 Coffea canephora HOM05D000198 ORTHO05D006356 6.2e-33 144.4 125 62.4
HanXRQChr13g0393411 Helianthus annuus HOM05D000198 ORTHO05D006356 6.2e-33 144.4 129 59.7
Lj6A690G69 Lonicera japonica HOM05D000198 ORTHO05D006356 6.2e-33 144.4 129 59.7
Potri.008G106000 Populus trichocarpa HOM05D000198 ORTHO05D006356 8.0e-33 144.1 125 59.2
Sabra10G0111400 Salix brachista HOM05D000198 ORTHO05D006356 8.0e-33 144.1 125 59.2
Nn4g25579 Nelumbo nucifera HOM05D000198 ORTHO05D006356 1.0e-32 143.7 125 59.2
Rhsim04G0235300 Rhododendron simsii HOM05D000198 ORTHO05D006356 1.0e-32 143.7 124 62.1
vmacro08054 Vaccinium macrocarpon HOM05D000198 ORTHO05D006356 1.0e-32 143.7 128 62.5
MD13G1155400 Malus domestica HOM05D000198 ORTHO05D006356 1.4e-32 143.3 125 60.8
DCAR_002508 Daucus carota HOM05D000198 ORTHO05D006356 1.8e-32 142.9 129 57.4
TAR636G3353 Trochodendron aralioides HOM05D000198 ORTHO05D006356 1.8e-32 142.9 124 62.1
Cfa015321 Carpinus fangiana HOM05D000198 ORTHO05D006356 2.3e-32 142.5 125 59.2
RcHm_v2.0_Chr4g0424861 Rosa chinensis HOM05D000198 ORTHO05D006356 4.0e-32 141.7 124 60.5
Duzib212G0663 Durio zibethinus HOM05D000198 ORTHO05D006356 5.2e-32 141.4 125 58.4
FAN07G1118 Fragaria x ananassa HOM05D000198 ORTHO05D006356 5.2e-32 141.4 124 60.5
MBI18_g32020_MAGBIO Magnolia biondii HOM05D000198 ORTHO05D006356 5.2e-32 141.4 125 58.4
Thecc.04G299600 Theobroma cacao HOM05D000198 ORTHO05D006356 5.2e-32 141.4 123 59.3
MSTRG.10149 Avicennia marina HOM05D000198 ORTHO05D006356 6.8e-32 141.0 125 60.8
Gohir.D02G059100 Gossypium hirsutum HOM05D000198 ORTHO05D006356 6.8e-32 141.0 124 59.7
PGR004G0803 Punica granatum HOM05D000198 ORTHO05D006356 6.8e-32 141.0 125 61.6
TAR107G0002 Trochodendron aralioides HOM05D000198 ORTHO05D006356 6.8e-32 141.0 125 58.4
CDE09G0351 Ceratophyllum demersum HOM05D000198 ORTHO05D006356 8.9e-32 140.6 125 60.0
FvH4_4g19600 Fragaria vesca HOM05D000198 ORTHO05D006356 8.9e-32 140.6 124 60.5
FAN12G3961 Fragaria x ananassa HOM05D000198 ORTHO05D006356 8.9e-32 140.6 124 60.5
Lalb_Chr13g0298451 Lupinus albus HOM05D000198 ORTHO05D006356 8.9e-32 140.6 125 60.0
COL.COLO4_34626 Corchorus olitorius HOM05D000198 ORTHO05D006356 1.2e-31 140.2 125 56.8
PSO170G3445 Papaver somniferum HOM05D000198 ORTHO05D006356 1.2e-31 140.2 125 59.2
PSO357G0208 Papaver somniferum HOM05D000198 ORTHO05D006356 1.2e-31 140.2 125 59.2
Gohir.A02G054100 Gossypium hirsutum HOM05D000198 ORTHO05D006356 1.5e-31 139.8 124 58.9
TWI53G2032 Tripterygium wilfordii HOM05D000198 ORTHO05D006356 1.5e-31 139.8 125 57.6
Gorai.005G066700 Gossypium raimondii HOM05D000198 ORTHO05D006356 2.0e-31 139.4 124 58.9
QL06p011923 Quercus lobata HOM05D000198 ORTHO05D006356 2.0e-31 139.4 125 58.4
GSVIVG01035003001 Vitis vinifera HOM05D000198 ORTHO05D006356 3.4e-31 138.7 125 59.2
Aqoxy5G02589 Aquilegia oxysepala HOM05D000198 ORTHO05D006356 4.4e-31 138.3 125 58.4
Lj6g0007194 Lotus japonicus HOM05D000198 ORTHO05D006356 4.4e-31 138.3 129 55.8
Lj6g0022295 Lotus japonicus HOM05D000198 ORTHO05D006356 4.4e-31 138.3 129 55.8
Psat1g161360 Pisum sativum HOM05D000198 ORTHO05D006356 4.4e-31 138.3 125 59.2
Lsat_1_v5_gn_6_16801 Lactuca sativa HOM05D000198 ORTHO05D006356 5.8e-31 137.9 125 59.2
Hund03122 Selenicereus undatus HOM05D000198 ORTHO05D006356 5.8e-31 137.9 125 58.4
arahy.Tifrunner.gnm1.ann1.6QU7U5 Arachis hypogaea HOM05D000198 ORTHO05D006356 7.5e-31 137.5 125 59.2
arahy.Tifrunner.gnm1.ann1.F4QS6F Arachis hypogaea HOM05D000198 ORTHO05D006356 7.5e-31 137.5 125 59.2
VMungo1215G0804 Vigna mungo HOM05D000198 ORTHO05D006356 9.8e-31 137.1 125 59.2
Zm00001eb331300 Zea mays HOM05D000198 ORTHO05D006356 9.8e-31 137.1 125 58.4
Haze_01293 Corylus avellana HOM05D000198 ORTHO05D006356 1.3e-30 136.7 123 58.5
Lalb_Chr18g0058711 Lupinus albus HOM05D000198 ORTHO05D006356 1.3e-30 136.7 125 59.2
THA.LOC104818885 Tarenaya hassleriana HOM05D000198 ORTHO05D006356 1.3e-30 136.7 125 59.2
Ciclev10004594m.g Citrus clementina HOM05D000198 ORTHO05D006356 2.2e-30 136.0 123 58.5
Cpa.g.sc9.66 Carica papaya HOM05D000198 ORTHO05D006356 2.9e-30 135.6 123 58.5
Glyma.07G240300 Glycine max HOM05D000198 ORTHO05D006356 2.9e-30 135.6 125 59.2
Lj4g0009022 Lotus japonicus HOM05D000198 ORTHO05D006356 2.9e-30 135.6 125 59.2
Aa31LG5G17230 Aethionema arabicum HOM05D000198 ORTHO05D006356 3.7e-30 135.2 129 55.0
Carub.0003s0615 Capsella rubella HOM05D000198 ORTHO05D006356 4.9e-30 134.8 125 57.6
Ca_01850_v3 Cicer arietinum L. HOM05D000198 ORTHO05D006356 4.9e-30 134.8 125 58.4
Medtr2g034160 Medicago truncatula HOM05D000198 ORTHO05D006356 4.9e-30 134.8 125 58.4
Os07g0688800 Oryza sativa ssp. japonica HOM05D000198 ORTHO05D006356 4.9e-30 134.8 125 58.4
Sp3g05630 Schrenkiella parvula HOM05D000198 ORTHO05D006356 4.9e-30 134.8 125 57.6
TPR.G27261 Trifolium pratense HOM05D000198 ORTHO05D006356 4.9e-30 134.8 125 56.8
CARHR081220 Cardamine hirsuta HOM05D000198 ORTHO05D006356 6.4e-30 134.4 125 56.8
Glyma.17G033100 Glycine max HOM05D000198 ORTHO05D006356 6.4e-30 134.4 125 59.2
C05p60610 Brassica napus HOM05D000198 ORTHO05D006356 8.3e-30 134.0 125 56.8
BraA05t22860Z Brassica rapa HOM05D000198 ORTHO05D006356 8.3e-30 134.0 125 56.8
Phvul.003G113500 Phaseolus vulgaris HOM05D000198 ORTHO05D006356 8.3e-30 134.0 125 57.6
A05p41390 Brassica napus HOM05D000198 ORTHO05D006356 1.1e-29 133.7 125 56.8
Thhalv10020345m.g Eutrema salsugineum HOM05D000198 ORTHO05D006356 1.1e-29 133.7 125 56.8
Glyma.15G140900 Glycine max HOM05D000198 ORTHO05D006356 1.1e-29 133.7 125 57.6
Atru.chr4.3011 Acer truncatum HOM05D000198 ORTHO05D006356 1.4e-29 133.3 123 56.1
EL10Ac3g05491 Beta vulgaris HOM05D000198 ORTHO05D006356 2.4e-29 132.5 125 56.8
Glyma.09G036000 Glycine max HOM05D000198 ORTHO05D006356 2.4e-29 132.5 125 58.4
Sc25g0003270 Simmondsia chinensis HOM05D000198 ORTHO05D006356 2.4e-29 132.5 125 56.0
BolC5t34718H Brassica oleracea HOM05D000198 ORTHO05D006356 3.2e-29 132.1 125 56.0
ATR0796G341 Amborella trichopoda HOM05D000198 ORTHO05D006356 4.1e-29 131.7 128 53.9
Ah.13g071920 Amaranthus hybridus HOM05D000198 ORTHO05D006356 5.4e-29 131.3 125 56.8
AL3G17750 Arabidopsis lyrata HOM05D000198 ORTHO05D006356 1.2e-28 130.2 125 55.2
AT3G66658 Arabidopsis thaliana HOM05D000198 ORTHO05D006356 1.2e-28 130.2 125 55.2
Lj4g0004127 Lotus japonicus HOM05D000198 ORTHO05D006356 2.0e-28 129.4 125 56.0
arahy.Tifrunner.gnm1.ann1.EEWD1J Arachis hypogaea HOM05D000198 ORTHO05D006356 2.7e-28 129.0 130 53.8
AUR62016198 Chenopodium quinoa HOM05D000198 ORTHO05D006356 6.0e-28 127.9 129 54.3
AUR62039290 Chenopodium quinoa HOM05D000198 ORTHO05D006356 1.7e-27 126.3 129 53.5
ClCG06G004610 Citrullus lanatus HOM05D000198 ORTHO05D006356 1.9e-26 122.9 124 53.2
CsaV3_6G022360 Cucumis sativus L. HOM05D000198 ORTHO05D006356 4.3e-26 121.7 124 53.2
SHI00147 Sapria himalayana HOM05D000198 ORTHO05D006356 1.1e-24 117.1 134 49.3
SEGI_35742 Sequoiadendron giganteum HOM05D000198 ORTHO05D006356 1.1e-24 117.1 126 50.0
Sed0015207 Sechium edule HOM05D000198 ORTHO05D006356 1.8e-24 116.3 124 50.0
MELO3C021272.2 Cucumis melo HOM05D000198 ORTHO05D006356 2.6e-23 112.5 128 48.4
SMO203G0073 Selaginella moellendorffii HOM05D000198 ORTHO05D006356 1.6e-20 103.2 131 43.5
AagrBONN_evm.TU.Sc2ySwM_117.3738 Anthoceros agrestis HOM05D000198 ORTHO05D006356 5.1e-19 98.2 127 40.9
HPP92_001926 Vanilla planifolia HOM05D005498 ORTHO05D006356 6.6e-19 97.8 107 49.5
SGA_v2.0_scaffold263G46020 Striga asiatica HOM05D000198 ORTHO05D006356 6.4e-14 81.3 123 41.5
SGA_v2.0_scaffold97G29254 Striga asiatica HOM05D000198 ORTHO05D006356 6.4e-14 81.3 123 41.5
Nitab4.5_0002150g0150 Nicotiana tabacum HOM05D000198 ORTHO05D006356 3.2e-13 79.0 123 41.5
Cre01.g033350 Chlamydomonas reinhardtii HOM05D000198 ORTHO05D006356 4.1e-13 78.6 121 38.0
PRCOL_00001219 Prasinoderma coloniale HOM05D000198 ORTHO05D006356 3.6e-09 65.5 123 32.5
MCO07G239 Micromonas commoda HOM05D000198 ORTHO05D006356 4.7e-09 65.1 123 34.1
Lalb_Chr25g0284351 Lupinus albus HOM05D000198 ORTHO05D005702 3.1e-08 62.4 107 35.5
Phvul.005G048150 Phaseolus vulgaris HOM05D000198 ORTHO05D005702 3.1e-08 62.4 107 33.6
unitig_32.g10632 Utricularia gibba HOM05D000198 ORTHO05D006356 4.0e-08 62.0 34 88.2
Solyc09g090700.1 Solanum lycopersicum HOM05D000198 ORTHO05D005702 1.2e-07 60.5 107 31.8
Glyma.08G163700 Glycine max HOM05D000198 ORTHO05D005702 1.5e-07 60.1 107 33.6
Psat1g015240 Pisum sativum HOM05D000198 ORTHO05D005702 1.5e-07 60.1 107 33.6
Ca_03179_v3 Cicer arietinum L. HOM05D000198 ORTHO05D005702 2.0e-07 59.7 107 32.7
Glyma.15G263500 Glycine max HOM05D000198 ORTHO05D005702 2.0e-07 59.7 107 31.8
HanXRQChr07g0190721 Helianthus annuus HOM05D000198 ORTHO05D005702 2.0e-07 59.7 107 31.8
HanXRQChr13g0419821 Helianthus annuus HOM05D000198 ORTHO05D005702 2.0e-07 59.7 107 31.8
DCAR_016507 Daucus carota HOM05D000198 ORTHO05D003365 4.4e-07 58.5 121 31.4
Lj3g0005942 Lotus japonicus HOM05D000198 ORTHO05D005702 4.4e-07 58.5 107 31.8
DCAR_004554 Daucus carota HOM05D000198 ORTHO05D005702 5.8e-07 58.2 107 30.8
Lsat_1_v5_gn_7_110980 Lactuca sativa HOM05D000198 ORTHO05D005702 5.8e-07 58.2 107 31.8
Medtr2g067660 Medicago truncatula HOM05D000198 ORTHO05D005702 7.6e-07 57.8 107 32.7
AUR62008285 Chenopodium quinoa HOM05D000198 ORTHO05D003365 9.9e-07 57.4 127 32.3
arahy.Tifrunner.gnm1.ann1.15VWWC Arachis hypogaea HOM05D000198 ORTHO05D005702 1.3e-06 57.0 107 30.8
EL10Ac5g10835 Beta vulgaris HOM05D000198 ORTHO05D003365 1.3e-06 57.0 127 31.5
Pp3s32_470 Physcomitrium patens HOM05D000198 ORTHO05D013560 1.3e-06 57.0 111 32.4
AUR62031049 Chenopodium quinoa HOM05D000198 ORTHO05D003365 1.7e-06 56.6 127 32.3
ECA236G0201 Erigeron canadensis HOM05D000198 ORTHO05D005702 1.7e-06 56.6 106 31.1
HanXRQChr11g0335861 Helianthus annuus HOM05D000198 ORTHO05D005702 1.7e-06 56.6 106 31.1
Lj5C120T17 Lonicera japonica HOM05D000198 ORTHO05D003365 1.7e-06 56.6 121 31.4
Sopen09g033640 Solanum pennellii HOM05D000198 ORTHO05D005702 1.7e-06 56.6 107 30.8
PGSC0003DMG400017144 Solanum tuberosum HOM05D000198 ORTHO05D005702 1.7e-06 56.6 107 30.8
CDE02G1446 Ceratophyllum demersum HOM05D000056 ORTHO05D000019 2.2e-06 56.2 33 75.8
Cfa021418 Carpinus fangiana HOM05D000198 ORTHO05D043608 2.9e-06 55.8 97 36.1
HanXRQChr07g0190661 Helianthus annuus HOM05D000198 ORTHO05D005702 2.9e-06 55.8 102 33.3
TPR.G28436 Trifolium pratense HOM05D000198 ORTHO05D005702 2.9e-06 55.8 103 31.1
arahy.Tifrunner.gnm1.ann1.D1NSDN Arachis hypogaea HOM05D000198 ORTHO05D005702 3.8e-06 55.5 107 29.9
HanXRQChr11g0335841 Helianthus annuus HOM05D000198 ORTHO05D005702 3.8e-06 55.5 125 29.6
Aa31LG4G1580 Aethionema arabicum HOM05D000198 ORTHO05D005702 4.9e-06 55.1 103 30.1
Cc05_g16560 Coffea canephora HOM05D000198 ORTHO05D005702 4.9e-06 55.1 107 29.9
CBR_g12537 Chara braunii HOM05D000198 ORTHO05D005702 6.4e-06 54.7 108 32.4
Dinv02661 Davidia involucrata HOM05D000198 ORTHO05D003365 6.4e-06 54.7 121 29.8
Os08g0424500 Oryza sativa ssp. japonica HOM05D000198 ORTHO05D003365 6.4e-06 54.7 121 28.9
Pp3c5_22400 Physcomitrium patens HOM05D000198 ORTHO05D003365 6.4e-06 54.7 123 29.3
Pp3s34_210 Physcomitrium patens HOM05D000198 ORTHO05D004797 6.4e-06 54.7 102 27.5
Sed0016621 Sechium edule HOM05D000198 ORTHO05D003365 6.4e-06 54.7 109 33.0
Ah.11g046210 Amaranthus hybridus HOM05D000198 ORTHO05D003365 8.4e-06 54.3 127 32.3
ATR0697G108 Amborella trichopoda HOM05D000198 ORTHO05D005702 8.4e-06 54.3 110 29.1
A06p27430 Brassica napus HOM05D000198 ORTHO05D003365 8.4e-06 54.3 122 29.5
BraA06t25682Z Brassica rapa HOM05D000198 ORTHO05D003365 8.4e-06 54.3 122 29.5
CAN.G524.27 Capsicum annuum HOM05D000198 ORTHO05D005702 8.4e-06 54.3 107 29.9
CBR_g12684 Chara braunii HOM05D000198 ORTHO05D005702 8.4e-06 54.3 124 29.0
Hma1.2p1_0002F.1_g002875 Hydrangea macrophylla HOM05D000198 ORTHO05D003365 8.4e-06 54.3 70 40.0
Lalb_Chr20g0108421 Lupinus albus HOM05D000198 ORTHO05D005702 8.4e-06 54.3 107 31.8
SMO364G0446 Selaginella moellendorffii HOM05D000198 ORTHO05D005702 8.4e-06 54.3 103 33.0


User provided reference genes

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