Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G48.40 Capsicum annuum HOM05D000229 ORTHO05D000182 5.4e-49 197.2 91 100.0
CAN.G48.35 Capsicum annuum HOM05D000229 ORTHO05D000182 1.1e-20 103.2 53 84.9
Sopen03g024070 Solanum pennellii HOM05D000229 ORTHO05D000182 1.1e-20 103.2 53 84.9
PGSC0003DMG400039522 Solanum tuberosum HOM05D000229 ORTHO05D000182 1.1e-20 103.2 53 84.9
PGSC0003DMG400041306 Solanum tuberosum HOM05D000229 ORTHO05D000182 1.1e-20 103.2 53 84.9
Nitab4.5_0002816g0070 Nicotiana tabacum HOM05D000229 ORTHO05D000182 1.4e-20 102.8 53 84.9
Nitab4.5_0003490g0050 Nicotiana tabacum HOM05D000229 ORTHO05D000182 4.1e-20 101.3 53 81.1
CAN.G48.36 Capsicum annuum HOM05D000229 ORTHO05D000182 5.3e-20 100.9 53 79.2
Nitab4.5_0002816g0100 Nicotiana tabacum HOM05D000229 ORTHO05D000182 5.3e-20 100.9 53 83.0
Solyc03g093280.3 Solanum lycopersicum HOM05D000229 ORTHO05D000182 9.0e-20 100.1 53 83.0
Solyc03g093270.3 Solanum lycopersicum HOM05D000229 ORTHO05D000182 2.6e-19 98.6 53 79.2
Sopen03g024060 Solanum pennellii HOM05D000229 ORTHO05D000182 2.6e-19 98.6 53 79.2
PGSC0003DMG400014822 Solanum tuberosum HOM05D000229 ORTHO05D000182 2.6e-19 98.6 53 79.2
Peaxi162Scf00241g00024 Petunia axillaris HOM05D000229 ORTHO05D000182 1.3e-18 96.3 53 75.5
Solyc03g093290.2 Solanum lycopersicum HOM05D000229 ORTHO05D000182 2.2e-18 95.5 92 53.3
Peaxi162Scf00167g00518 Petunia axillaris HOM05D000229 ORTHO05D000182 1.4e-17 92.8 53 69.8
TPR.G3677 Trifolium pratense HOM05D000229 ORTHO05D000182 1.9e-17 92.4 53 71.7
CiPaw.04G059300 Carya illinoinensis HOM05D000229 ORTHO05D000182 2.5e-17 92.0 53 73.6
Psat7g159600 Pisum sativum HOM05D000229 ORTHO05D000182 2.5e-17 92.0 53 69.8
Oeu022473.1 Olea europaea HOM05D000229 ORTHO05D000182 4.2e-17 91.3 54 75.9
VMungo1127G2160 Vigna mungo HOM05D000229 ORTHO05D000182 4.2e-17 91.3 53 67.9
Phvul.011G007600 Phaseolus vulgaris HOM05D000229 ORTHO05D000182 5.5e-17 90.9 53 67.9
Glyma.09G229500 Glycine max HOM05D000229 ORTHO05D000182 7.2e-17 90.5 53 67.9
Glyma.12G006800 Glycine max HOM05D000229 ORTHO05D000182 7.2e-17 90.5 53 67.9
Sc19g0002060 Simmondsia chinensis HOM05D000229 ORTHO05D000182 7.2e-17 90.5 53 69.8
Lj3g0005558 Lotus japonicus HOM05D000229 ORTHO05D000182 9.3e-17 90.1 53 67.9
Medtr4g036845 Medicago truncatula HOM05D000229 ORTHO05D000182 1.2e-16 89.7 53 67.9
Manes.06G133900 Manihot esculenta HOM05D000229 ORTHO05D000182 1.6e-16 89.4 53 67.9
Manes.06G134000 Manihot esculenta HOM05D000229 ORTHO05D000182 1.6e-16 89.4 53 67.9
arahy.Tifrunner.gnm1.ann1.6W49KF Arachis hypogaea HOM05D000229 ORTHO05D000182 2.7e-16 88.6 53 66.0
arahy.Tifrunner.gnm1.ann1.P7LS6G Arachis hypogaea HOM05D000229 ORTHO05D000182 2.7e-16 88.6 53 66.0
Migut.F00483 Erythranthe guttata HOM05D000229 ORTHO05D000182 2.7e-16 88.6 53 66.0
Ca_25530_v3 Cicer arietinum L. HOM05D000229 ORTHO05D000182 4.6e-16 87.8 53 66.0
AUR62015489 Chenopodium quinoa HOM05D000229 ORTHO05D000182 6.1e-16 87.4 53 64.2
Actinidia13580 Actinidia chinensis HOM05D000229 ORTHO05D000182 1.0e-15 86.7 53 66.0
Thecc.03G154000 Theobroma cacao HOM05D000229 ORTHO05D000182 1.0e-15 86.7 53 66.0
EL10Ac3g05851 Beta vulgaris HOM05D000229 ORTHO05D000182 1.4e-15 86.3 53 64.2
SGA_v2.0_scaffold2G01217 Striga asiatica HOM05D000229 ORTHO05D000182 1.4e-15 86.3 53 66.0
Lj8A43T53 Lonicera japonica HOM05D000229 ORTHO05D000182 1.8e-15 85.9 53 64.2
Dinv06567 Davidia involucrata HOM05D000229 ORTHO05D000182 2.3e-15 85.5 53 64.2
Hma1.2p1_0432F.1_g151840 Hydrangea macrophylla HOM05D000229 ORTHO05D000182 2.3e-15 85.5 53 66.0
CiPaw.03G092500 Carya illinoinensis HOM05D000229 ORTHO05D000182 3.0e-15 85.1 53 66.0
AUR62002210 Chenopodium quinoa HOM05D000229 ORTHO05D000182 3.0e-15 85.1 53 62.3
COL.COLO4_14106 Corchorus olitorius HOM05D000229 ORTHO05D000182 3.0e-15 85.1 53 66.0
Lalb_Chr01g0022421 Lupinus albus HOM05D000229 ORTHO05D000182 5.1e-15 84.3 53 64.2
Nn1g00978 Nelumbo nucifera HOM05D000229 ORTHO05D000182 5.1e-15 84.3 75 50.7
GSVIVG01014048001 Vitis vinifera HOM05D000229 ORTHO05D000182 5.1e-15 84.3 53 62.3
TAR375G0843 Trochodendron aralioides HOM05D000229 ORTHO05D000182 6.7e-15 84.0 53 69.8
Ah.07g207730 Amaranthus hybridus HOM05D000229 ORTHO05D000182 1.1e-14 83.2 53 62.3
Nn6g33940 Nelumbo nucifera HOM05D000229 ORTHO05D000182 1.1e-14 83.2 53 64.2
Rhsim03G0166200 Rhododendron simsii HOM05D000229 ORTHO05D000182 1.1e-14 83.2 54 63.0
Actinidia24998 Actinidia chinensis HOM05D000229 ORTHO05D000182 1.9e-14 82.4 53 64.2
CANSAT56G2434 Cannabis sativa HOM05D000229 ORTHO05D000182 2.5e-14 82.0 53 60.4
Cfa008154 Carpinus fangiana HOM05D000229 ORTHO05D000182 2.5e-14 82.0 53 66.0
Ciclev10005463m.g Citrus clementina HOM05D000229 ORTHO05D000182 3.3e-14 81.6 54 64.8
Haze_13891 Corylus avellana HOM05D000229 ORTHO05D000182 3.3e-14 81.6 53 64.2
Dinv16842 Davidia involucrata HOM05D000229 ORTHO05D000182 3.3e-14 81.6 53 60.4
QL09p005415 Quercus lobata HOM05D000229 ORTHO05D000182 3.3e-14 81.6 53 62.3
MELO3C017668.2 Cucumis melo HOM05D000229 ORTHO05D000182 5.7e-14 80.9 54 63.0
CsaV3_4G003990 Cucumis sativus L. HOM05D000229 ORTHO05D000182 5.7e-14 80.9 54 63.0
Aqoxy7G00774 Aquilegia oxysepala HOM05D000229 ORTHO05D000182 9.7e-14 80.1 53 58.5
ClCG07G016800 Citrullus lanatus HOM05D000229 ORTHO05D000182 9.7e-14 80.1 54 61.1
Oeu042555.1 Olea europaea HOM05D000229 ORTHO05D000182 1.7e-13 79.3 54 66.7
Atru.chr1.759 Acer truncatum HOM05D000229 ORTHO05D000182 2.8e-13 78.6 53 58.5
DCAR_020184 Daucus carota HOM05D000229 ORTHO05D000182 2.8e-13 78.6 53 58.5
MD07G1252700 Malus domestica HOM05D000229 ORTHO05D000182 2.8e-13 78.6 53 60.4
Nitab4.5_0003490g0090 Nicotiana tabacum HOM05D000229 ORTHO05D000182 2.8e-13 78.6 41 82.9
vmacro06813 Vaccinium macrocarpon HOM05D000229 ORTHO05D000182 2.8e-13 78.6 54 61.1
Duzib205G0617 Durio zibethinus HOM05D000229 ORTHO05D000182 1.1e-12 76.6 54 63.0
Potri.001G125400 Populus trichocarpa HOM05D000229 ORTHO05D000182 1.1e-12 76.6 53 58.5
SalBow6G5779 Salvia bowleyana HOM05D000229 ORTHO05D000182 1.1e-12 76.6 53 56.6
CSS0023192 Camellia sinensis var. sinensis HOM05D000229 ORTHO05D000182 1.4e-12 76.3 54 59.3
Gohir.A03G059266 Gossypium hirsutum HOM05D000229 ORTHO05D000182 1.4e-12 76.3 54 59.3
RcHm_v2.0_Chr1g0374161 Rosa chinensis HOM05D000229 ORTHO05D000182 1.8e-12 75.9 53 58.5
CsaV3_1G007520 Cucumis sativus L. HOM05D000229 ORTHO05D000182 2.4e-12 75.5 53 50.9
SalBow6G6874 Salvia bowleyana HOM05D000229 ORTHO05D000182 2.4e-12 75.5 53 58.5
FvH4_7g27320 Fragaria vesca HOM05D000229 ORTHO05D000182 3.1e-12 75.1 53 58.5
FAN03G1108 Fragaria x ananassa HOM05D000229 ORTHO05D000182 3.1e-12 75.1 53 58.5
FAN03G1512 Fragaria x ananassa HOM05D000229 ORTHO05D000182 3.1e-12 75.1 53 58.5
FAN06G2303 Fragaria x ananassa HOM05D000229 ORTHO05D000182 3.1e-12 75.1 53 58.5
FAN06G3514 Fragaria x ananassa HOM05D000229 ORTHO05D000182 3.1e-12 75.1 53 58.5
FAN10G2752 Fragaria x ananassa HOM05D000229 ORTHO05D000182 3.1e-12 75.1 53 58.5
Gohir.D03G106800 Gossypium hirsutum HOM05D000229 ORTHO05D000182 3.1e-12 75.1 54 59.3
Gorai.003G113200 Gossypium raimondii HOM05D000229 ORTHO05D000182 3.1e-12 75.1 54 59.3
Carub.0008s2310 Capsella rubella HOM05D000229 ORTHO05D000182 4.1e-12 74.7 54 63.0
Cc02_g04360 Coffea canephora HOM05D000229 ORTHO05D000182 4.1e-12 74.7 53 62.3
CSS0045689 Camellia sinensis var. sinensis HOM05D000229 ORTHO05D000182 5.3e-12 74.3 54 61.1
PGR042G1397 Punica granatum HOM05D000229 ORTHO05D000182 5.3e-12 74.3 54 61.1
CARHR276210 Cardamine hirsuta HOM05D000229 ORTHO05D000182 6.9e-12 73.9 54 61.1
BcaB07g29833 Brassica carinata HOM05D000229 ORTHO05D000182 9.1e-12 73.6 54 61.1
Prupe.2G276200 Prunus persica HOM05D000229 ORTHO05D000182 9.1e-12 73.6 53 56.6
ATR0317G010 Amborella trichopoda HOM05D000229 ORTHO05D000182 1.2e-11 73.2 53 56.6
BcaC01g02467 Brassica carinata HOM05D000229 ORTHO05D000182 1.2e-11 73.2 54 59.3
C03p64470 Brassica napus HOM05D000229 ORTHO05D000182 1.2e-11 73.2 54 59.3
BraA06t25860Z Brassica rapa HOM05D000229 ORTHO05D000182 1.2e-11 73.2 54 59.3
Thhalv10004621m.g Eutrema salsugineum HOM05D000229 ORTHO05D000182 1.2e-11 73.2 54 61.1
Sed0003248 Sechium edule HOM05D000229 ORTHO05D000182 1.2e-11 73.2 54 55.6
A02p42290 Brassica napus HOM05D000229 ORTHO05D000182 1.5e-11 72.8 54 59.3
A06p29120 Brassica napus HOM05D000229 ORTHO05D000182 1.5e-11 72.8 54 59.3
C02p62150 Brassica napus HOM05D000229 ORTHO05D000182 1.5e-11 72.8 54 59.3
BraA02t09158Z Brassica rapa HOM05D000229 ORTHO05D000182 1.5e-11 72.8 54 59.3
Eucgr.A02898 Eucalyptus grandis HOM05D000229 ORTHO05D000182 1.5e-11 72.8 54 61.1
FAN10G2574 Fragaria x ananassa HOM05D000229 ORTHO05D000182 1.5e-11 72.8 53 56.6
Sp2g25600 Schrenkiella parvula HOM05D000229 ORTHO05D000182 1.5e-11 72.8 54 61.1
AL8G39300 Arabidopsis lyrata HOM05D000229 ORTHO05D000182 2.0e-11 72.4 54 59.3
BolC3t18702H Brassica oleracea HOM05D000229 ORTHO05D000182 2.0e-11 72.4 54 59.3
TWI14G0996 Tripterygium wilfordii HOM05D000229 ORTHO05D000182 2.0e-11 72.4 54 61.1
AT5G62420 Arabidopsis thaliana HOM05D000229 ORTHO05D000182 2.6e-11 72.0 54 59.3
BcaC03g18147 Brassica carinata HOM05D000229 ORTHO05D000182 2.6e-11 72.0 54 59.3
BolC2t12274H Brassica oleracea HOM05D000229 ORTHO05D000182 2.6e-11 72.0 54 59.3
MELO3C002170.2 Cucumis melo HOM05D000229 ORTHO05D000182 5.9e-11 70.9 53 49.1
THA.LOC104821417 Tarenaya hassleriana HOM05D000229 ORTHO05D000182 5.9e-11 70.9 54 55.6
Aa31LG11G1210 Aethionema arabicum HOM05D000229 ORTHO05D000182 7.7e-11 70.5 54 55.6
Sabra01G0096500 Salix brachista HOM05D000229 ORTHO05D000182 2.2e-10 68.9 53 54.7
FAN01G1358 Fragaria x ananassa HOM05D000229 ORTHO05D000182 3.8e-10 68.2 53 56.6
Sed0006605 Sechium edule HOM05D000229 ORTHO05D000182 1.1e-09 66.6 53 47.2
SEGI_05977 Sequoiadendron giganteum HOM05D000229 ORTHO05D000182 3.6e-08 61.6 53 43.4
BcaB02g09644 Brassica carinata HOM05D000229 ORTHO05D000182 4.7e-08 61.2 48 56.2
SEGI_21484 Sequoiadendron giganteum HOM05D000229 ORTHO05D000182 6.1e-08 60.8 53 43.4
ClCG01G014810 Citrullus lanatus HOM05D000229 ORTHO05D000182 6.7e-07 57.4 45 44.4
SEGI_00736 Sequoiadendron giganteum HOM05D000229 ORTHO05D000182 2.0e-06 55.8 53 47.2
SEGI_06432 Sequoiadendron giganteum HOM05D000229 ORTHO05D000182 2.6e-06 55.5 53 47.2
SEGI_23411 Sequoiadendron giganteum HOM05D000229 ORTHO05D000182 3.3e-06 55.1 53 43.4
SEGI_02825 Sequoiadendron giganteum HOM05D000229 ORTHO05D000182 5.7e-06 54.3 53 45.3
SEGI_31906 Sequoiadendron giganteum HOM05D000229 ORTHO05D000182 5.7e-06 54.3 53 41.5
Manes.12G022700 Manihot esculenta HOM05D000229 ORTHO05D000182 7.4e-06 53.9 54 42.6
AUR62026550 Chenopodium quinoa HOM05D000229 ORTHO05D000182 9.7e-06 53.5 54 44.4
Nitab4.5_0003602g0050 Nicotiana tabacum HOM05D000229 ORTHO05D000182 9.7e-06 53.5 54 42.6


User provided reference genes

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