Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G48.15 Capsicum annuum HOM05D005186 ORTHO05D006278 1.2e-204 716.5 405 100.0
Nitab4.5_0001383g0010 Nicotiana tabacum HOM05D005186 ORTHO05D006278 3.7e-166 588.6 413 82.3
Solyc03g083970.3 Solanum lycopersicum HOM05D005186 ORTHO05D006278 1.5e-162 576.6 409 84.1
Sopen03g023730 Solanum pennellii HOM05D005186 ORTHO05D006278 5.6e-162 574.7 410 83.9
PGSC0003DMG400013858 Solanum tuberosum HOM05D005186 ORTHO05D006278 7.3e-162 574.3 415 84.1
Nitab4.5_0003875g0030 Nicotiana tabacum HOM05D005186 ORTHO05D006278 2.5e-154 549.3 410 80.7
Peaxi162Scf00241g00318 Petunia axillaris HOM05D005186 ORTHO05D006278 3.9e-139 498.8 414 75.1
Dinv28566 Davidia involucrata HOM05D005186 ORTHO05D006278 2.3e-107 393.3 420 59.8
SGA_v2.0_scaffold543G52822 Striga asiatica HOM05D005186 ORTHO05D006278 3.0e-107 392.9 420 60.0
Cc02_g04200 Coffea canephora HOM05D005186 ORTHO05D006278 3.9e-107 392.5 426 63.4
Oeu022491.2 Olea europaea HOM05D005186 ORTHO05D006278 1.1e-106 391.0 455 59.8
Oeu042561.2 Olea europaea HOM05D005186 ORTHO05D006278 2.0e-103 380.2 449 55.0
Hma1.2p1_0432F.1_g151690 Hydrangea macrophylla HOM05D005186 ORTHO05D006278 5.9e-103 378.6 414 60.4
HanXRQChr14g0461411 Helianthus annuus HOM05D005186 ORTHO05D006278 7.2e-101 371.7 415 60.2
TWI39G1272 Tripterygium wilfordii HOM05D005186 ORTHO05D006278 1.4e-99 367.5 421 58.2
vmacro06793 Vaccinium macrocarpon HOM05D005186 ORTHO05D006278 6.7e-99 365.2 435 54.9
Migut.F00469 Erythranthe guttata HOM05D005186 ORTHO05D006278 5.7e-98 362.1 419 55.6
SGA_v2.0_scaffold2G01194 Striga asiatica HOM05D005186 ORTHO05D006278 1.8e-96 357.1 419 60.4
Actinidia13575 Actinidia chinensis HOM05D005186 ORTHO05D006278 1.2e-95 354.4 453 55.8
RhsimUnG0046700 Rhododendron simsii HOM05D005186 ORTHO05D006278 2.6e-95 353.2 436 57.3
Nn1g01074 Nelumbo nucifera HOM05D005186 ORTHO05D006278 1.3e-94 350.9 425 54.4
Ciclev10005111m.g Citrus clementina HOM05D005186 ORTHO05D006278 5.0e-94 349.0 419 57.0
CANSAT56G0052 Cannabis sativa HOM05D005186 ORTHO05D006278 2.5e-93 346.7 423 54.8
Hma1.2p1_1640F.1_g295100 Hydrangea macrophylla HOM05D005186 ORTHO05D006278 5.5e-93 345.5 412 56.1
Thecc.03G156500 Theobroma cacao HOM05D005186 ORTHO05D006278 7.2e-93 345.1 409 59.9
TWI23G1038 Tripterygium wilfordii HOM05D005186 ORTHO05D006278 7.2e-93 345.1 419 55.4
Atru.chr1.716 Acer truncatum HOM05D005186 ORTHO05D006278 3.6e-92 342.8 413 53.5
MSTRG.128 Avicennia marina HOM05D005186 ORTHO05D006278 4.7e-92 342.4 429 55.0
Aqoxy7G00728 Aquilegia oxysepala HOM05D005186 ORTHO05D006278 2.3e-91 340.1 423 53.4
Duzib205G1009 Durio zibethinus HOM05D005186 ORTHO05D006278 8.8e-91 338.2 412 59.7
Lsat_1_v5_gn_2_129120 Lactuca sativa HOM05D005186 ORTHO05D006278 1.1e-90 337.8 412 59.0
Dinv22950 Davidia involucrata HOM05D005186 ORTHO05D006278 1.5e-90 337.4 368 61.4
Gohir.D03G107500 Gossypium hirsutum HOM05D005186 ORTHO05D006278 2.6e-90 336.7 405 60.7
Gorai.003G113800 Gossypium raimondii HOM05D005186 ORTHO05D006278 6.3e-89 332.0 405 60.2
Potri.012G126000 Populus trichocarpa HOM05D005186 ORTHO05D006278 8.2e-89 331.6 423 57.0
Gohir.A03G058600 Gossypium hirsutum HOM05D005186 ORTHO05D006278 1.1e-88 331.3 411 59.9
Lj8A42G21 Lonicera japonica HOM05D005186 ORTHO05D006278 1.1e-88 331.3 439 54.4
Nn6g34030 Nelumbo nucifera HOM05D005186 ORTHO05D006278 1.1e-88 331.3 429 51.5
TAR374G0329 Trochodendron aralioides HOM05D005186 ORTHO05D006278 1.8e-88 330.5 422 53.3
Haze_13870 Corylus avellana HOM05D005186 ORTHO05D006278 2.2e-86 323.6 409 55.7
SalBow2G2587 Salvia bowleyana HOM05D005186 ORTHO05D006278 8.5e-86 321.6 411 52.6
Manes.14G035500 Manihot esculenta HOM05D005186 ORTHO05D006278 5.5e-85 318.9 407 54.1
Sabra15G0140200 Salix brachista HOM05D005186 ORTHO05D006278 5.5e-85 318.9 421 53.2
CsaV3_7G006320 Cucumis sativus L. HOM05D005186 ORTHO05D006278 2.1e-84 317.0 417 49.9
unitig_1.g29355 Utricularia gibba HOM05D005186 ORTHO05D006278 2.7e-84 316.6 402 54.5
unitig_747.g22057 Utricularia gibba HOM05D005186 ORTHO05D006278 2.7e-84 316.6 402 54.5
ECA238G0955 Erigeron canadensis HOM05D005186 ORTHO05D006278 8.0e-84 315.1 415 56.1
QL09p019611 Quercus lobata HOM05D005186 ORTHO05D006278 8.0e-84 315.1 440 54.8
Cpa.g.sc3.315 Carica papaya HOM05D005186 ORTHO05D006278 1.0e-83 314.7 420 55.2
arahy.Tifrunner.gnm1.ann1.7NC073 Arachis hypogaea HOM05D005186 ORTHO05D006278 2.0e-82 310.5 424 55.4
Prupe.2G277700 Prunus persica HOM05D005186 ORTHO05D006278 3.3e-82 309.7 425 55.5
Manes.06G135200 Manihot esculenta HOM05D005186 ORTHO05D006278 1.7e-81 307.4 421 53.7
PGR142G0385 Punica granatum HOM05D005186 ORTHO05D006278 2.2e-81 307.0 434 53.0
COL.COLO4_14129 Corchorus olitorius HOM05D005186 ORTHO05D006278 3.7e-81 306.2 404 52.7
PGR042G0730 Punica granatum HOM05D005186 ORTHO05D006278 6.3e-81 305.4 422 49.8
Hund11823 Selenicereus undatus HOM05D005186 ORTHO05D006278 1.4e-80 304.3 429 57.3
Lj3g0017931 Lotus japonicus HOM05D005186 ORTHO05D006278 1.8e-80 303.9 428 51.6
arahy.Tifrunner.gnm1.ann1.UNN1LQ Arachis hypogaea HOM05D005186 ORTHO05D006278 5.3e-80 302.4 433 53.8
Potri.015G126800 Populus trichocarpa HOM05D005186 ORTHO05D006278 5.3e-80 302.4 423 53.4
Eucgr.A02891 Eucalyptus grandis HOM05D005186 ORTHO05D006278 7.0e-80 302.0 435 52.0
TPR.G3671 Trifolium pratense HOM05D005186 ORTHO05D006278 7.0e-80 302.0 436 53.2
Sabra12G0094900 Salix brachista HOM05D005186 ORTHO05D006278 2.0e-79 300.4 447 51.5
DCAR_020192 Daucus carota HOM05D005186 ORTHO05D006278 2.6e-79 300.1 406 53.9
Ah.07g207900 Amaranthus hybridus HOM05D005186 ORTHO05D006278 3.8e-78 296.2 421 51.8
Medtr4g036110 Medicago truncatula HOM05D005186 ORTHO05D006278 1.1e-77 294.7 419 54.9
RcHm_v2.0_Chr1g0374461 Rosa chinensis HOM05D005186 ORTHO05D006278 4.2e-77 292.7 421 51.1
CiPaw.04G060200 Carya illinoinensis HOM05D005186 ORTHO05D006278 2.1e-76 290.4 417 53.0
MELO3C018660.2 Cucumis melo HOM05D005186 ORTHO05D006278 2.1e-76 290.4 417 47.2
ClCG09G015150 Citrullus lanatus HOM05D005186 ORTHO05D006278 4.7e-76 289.3 420 46.9
EL10Ac3g05838 Beta vulgaris HOM05D005186 ORTHO05D006278 1.0e-75 288.1 412 51.9
Glyma.12G005300 Glycine max HOM05D005186 ORTHO05D006278 1.0e-75 288.1 439 51.7
Glyma.09G231200 Glycine max HOM05D005186 ORTHO05D006278 2.3e-75 287.0 446 50.4
FAN06G5126 Fragaria x ananassa HOM05D005186 ORTHO05D006278 4.0e-75 286.2 420 50.5
Sed0005126 Sechium edule HOM05D005186 ORTHO05D006278 4.0e-75 286.2 342 52.9
Sc13g0007880 Simmondsia chinensis HOM05D005186 ORTHO05D006278 5.2e-75 285.8 361 54.6
FAN06G2498 Fragaria x ananassa HOM05D005186 ORTHO05D006278 6.7e-75 285.4 422 50.7
FvH4_7g27600 Fragaria vesca HOM05D005186 ORTHO05D006278 1.5e-74 284.3 422 50.9
MBI04_g37589_MAGBIO Magnolia biondii HOM05D005186 ORTHO05D006278 1.5e-74 284.3 416 49.8
PSO170G0780 Papaver somniferum HOM05D005186 ORTHO05D006278 2.0e-74 283.9 430 49.3
VMungo1127G0816 Vigna mungo HOM05D005186 ORTHO05D006278 2.0e-74 283.9 447 50.3
PSO017G1100 Papaver somniferum HOM05D005186 ORTHO05D006278 4.4e-74 282.7 434 50.0
TAR375G0993 Trochodendron aralioides HOM05D005186 ORTHO05D006278 1.3e-73 281.2 339 55.2
FAN01G3063 Fragaria x ananassa HOM05D005186 ORTHO05D006278 1.7e-73 280.8 421 49.9
FAN03G1399 Fragaria x ananassa HOM05D005186 ORTHO05D006278 4.8e-73 279.3 417 50.1
Lalb_Chr01g0000291 Lupinus albus HOM05D005186 ORTHO05D006278 1.8e-72 277.3 315 58.4
Lalb_Chr19g0140361 Lupinus albus HOM05D005186 ORTHO05D006278 1.8e-72 277.3 321 61.1
Phvul.011G006100 Phaseolus vulgaris HOM05D005186 ORTHO05D006278 1.8e-72 277.3 446 48.7
FAN10G1701 Fragaria x ananassa HOM05D005186 ORTHO05D006278 1.2e-71 274.6 423 49.4
CSS0020740 Camellia sinensis var. sinensis HOM05D005186 ORTHO05D006278 2.5e-69 266.9 338 57.1
CDE02G0091 Ceratophyllum demersum HOM05D005186 ORTHO05D006278 2.7e-68 263.5 406 47.5
AUR62015515 Chenopodium quinoa HOM05D005186 ORTHO05D006278 8.0e-68 261.9 193 74.6
Sed0012571 Sechium edule HOM05D005186 ORTHO05D006278 1.2e-66 258.1 408 48.5
AUR62002195 Chenopodium quinoa HOM05D005186 ORTHO05D006278 3.4e-66 256.5 248 65.3
GSVIVG01018630001 Vitis vinifera HOM05D005186 ORTHO05D006278 7.5e-66 255.4 247 61.5
CiPaw.03G094100 Carya illinoinensis HOM05D005186 ORTHO05D006278 3.1e-64 250.0 346 55.2
HPP92_022436 Vanilla planifolia HOM05D005186 ORTHO05D006278 1.0e-62 245.0 366 46.2
Psat7g207000 Pisum sativum HOM05D005186 ORTHO05D006278 2.3e-62 243.8 196 68.4
AL8G39220 Arabidopsis lyrata HOM05D005186 ORTHO05D006278 4.7e-60 236.1 463 44.1
Migut.F01178 Erythranthe guttata HOM05D005186 ORTHO05D006278 4.7e-60 236.1 173 72.3
Thhalv10004201m.g Eutrema salsugineum HOM05D005186 ORTHO05D006278 1.4e-59 234.6 463 44.3
Hund04601 Selenicereus undatus HOM05D005186 ORTHO05D006278 1.4e-59 234.6 395 45.3
Ca_25005_v3 Cicer arietinum L. HOM05D005186 ORTHO05D006278 3.4e-58 229.9 173 72.8
C03p64500 Brassica napus HOM05D005186 ORTHO05D006278 4.9e-57 226.1 446 41.0
AT5G62390 Arabidopsis thaliana HOM05D005186 ORTHO05D006278 8.3e-57 225.3 462 42.6
BcaC01g02463 Brassica carinata HOM05D005186 ORTHO05D006278 1.4e-56 224.6 446 40.8
Sp2g25560 Schrenkiella parvula HOM05D005186 ORTHO05D006278 1.8e-56 224.2 475 43.8
Carub.0008s2307 Capsella rubella HOM05D005186 ORTHO05D006278 5.4e-56 222.6 476 41.8
CARHR276170 Cardamine hirsuta HOM05D005186 ORTHO05D006278 2.0e-55 220.7 461 44.0
THA.LOC104821410 Tarenaya hassleriana HOM05D005186 ORTHO05D006278 2.0e-55 220.7 169 68.0
BolC3t18705H Brassica oleracea HOM05D005186 ORTHO05D006278 2.3e-54 217.2 452 40.9
BolC1t01505H Brassica oleracea HOM05D005186 ORTHO05D006278 8.6e-54 215.3 301 53.2
Thecc.01G380900 Theobroma cacao HOM05D005186 ORTHO05D006278 1.9e-53 214.2 401 41.9
BcaNung02779 Brassica carinata HOM05D005186 ORTHO05D006278 5.6e-53 212.6 169 66.9
C01p15530 Brassica napus HOM05D005186 ORTHO05D006278 6.1e-52 209.1 484 43.2
A01p12890 Brassica napus HOM05D005186 ORTHO05D006278 1.0e-51 208.4 168 66.7
Aa31LG11G1230 Aethionema arabicum HOM05D005186 ORTHO05D006278 1.2e-50 204.9 456 42.3
BraA01t01233Z Brassica rapa HOM05D005186 ORTHO05D006278 1.2e-50 204.9 467 43.7
ATR1153G063 Amborella trichopoda HOM05D005186 ORTHO05D006278 1.3e-49 201.4 431 40.6
Zm00001eb379410 Zea mays HOM05D005186 ORTHO05D006278 3.2e-48 196.8 409 37.2
CDE11G1075 Ceratophyllum demersum HOM05D005186 ORTHO05D006278 4.1e-48 196.4 412 40.3
COL.COLO4_12507 Corchorus olitorius HOM05D005186 ORTHO05D006278 2.7e-47 193.7 331 44.4
BcaC01g02462 Brassica carinata HOM05D005186 ORTHO05D006278 1.2e-44 184.9 143 69.2
HanXRQChr05g0146091 Helianthus annuus HOM05D005186 ORTHO05D006278 6.8e-43 179.1 155 65.2
Os06g0104400 Oryza sativa ssp. japonica HOM05D005186 ORTHO05D006278 7.5e-42 175.6 306 46.1
Zm00001eb229450 Zea mays HOM05D005186 ORTHO05D006278 4.1e-40 169.9 311 42.4
Os02g0105500 Oryza sativa ssp. japonica HOM05D005186 ORTHO05D006278 3.5e-39 166.8 256 41.8
SHI13968 Sapria himalayana HOM05D005186 ORTHO05D006278 2.5e-37 160.6 422 33.4
CAN.G1067.7 Capsicum annuum HOM05D005186 ORTHO05D006278 2.6e-34 150.6 180 53.9
Atru.chr5.265 Acer truncatum HOM05D005186 ORTHO05D006278 5.4e-32 142.9 130 58.5
CAN.G319.13 Capsicum annuum HOM05D005186 ORTHO05D006278 1.3e-25 121.7 80 83.8
SEGI_24397 Sequoiadendron giganteum HOM05D005186 ORTHO05D006278 1.2e-20 105.1 114 48.2
GSVIVG01000691001 Vitis vinifera HOM05D005186 ORTHO05D006278 1.6e-20 104.8 86 68.6
COL.COLO4_07114 Corchorus olitorius HOM05D005186 ORTHO05D006278 3.6e-20 103.6 79 72.2
GSVIVG01000692001 Vitis vinifera HOM05D005186 ORTHO05D006278 4.7e-20 103.2 86 68.6
CSS0003747 Camellia sinensis var. sinensis HOM05D005186 ORTHO05D006278 1.1e-16 92.0 67 68.7
ECA238G1972 Erigeron canadensis HOM05D005186 ORTHO05D006278 1.9e-16 91.3 63 73.0
Nn3g18746 Nelumbo nucifera HOM05D005186 ORTHO05D006278 4.0e-11 73.6 67 53.7
Mapoly0035s0113 Marchantia polymorpha HOM05D006269 ORTHO05D001487 2.6e-10 70.9 116 35.3
vmacro13212 Vaccinium macrocarpon HOM05D006269 ORTHO05D001487 1.7e-09 68.2 174 28.7
Sc11g0004700 Simmondsia chinensis HOM05D005710 ORTHO05D004657 3.8e-09 67.0 105 43.8
SEGI_35486 Sequoiadendron giganteum HOM05D006269 ORTHO05D001487 2.4e-08 64.3 107 35.5
Ca_25004_v3 Cicer arietinum L. HOM05D005186 ORTHO05D006278 4.2e-08 63.5 276 34.8
FAN03G1572 Fragaria x ananassa HOM05D005186 ORTHO05D006278 4.2e-08 63.5 48 66.7
Sabra14G0043300 Salix brachista HOM05D005186 ORTHO05D006278 5.4e-08 63.2 61 54.1
ClCG11G004670 Citrullus lanatus HOM05D005710 ORTHO05D004657 7.1e-08 62.8 114 37.7
Mapoly0045s0108 Marchantia polymorpha HOM05D006269 ORTHO05D001487 7.1e-08 62.8 104 33.7
RcHm_v2.0_Chr1g0335331 Rosa chinensis HOM05D005186 ORTHO05D006278 9.3e-08 62.4 62 61.3
SEGI_27071 Sequoiadendron giganteum HOM05D006269 ORTHO05D001487 9.3e-08 62.4 107 35.5
Rhsim08G0074100 Rhododendron simsii HOM05D005710 ORTHO05D004657 1.6e-07 61.6 99 38.4
MELO3C022025.2 Cucumis melo HOM05D005710 ORTHO05D004657 2.1e-07 61.2 146 32.9
Hma1.2p1_0481F.1_g161930 Hydrangea macrophylla HOM05D005710 ORTHO05D004657 2.1e-07 61.2 99 39.4
Hund13162 Selenicereus undatus HOM05D005710 ORTHO05D004657 2.7e-07 60.8 99 41.4
SEGI_37331 Sequoiadendron giganteum HOM05D006269 ORTHO05D001487 2.7e-07 60.8 107 30.8
arahy.Tifrunner.gnm1.ann1.II6FYR Arachis hypogaea HOM05D006269 ORTHO05D001487 3.5e-07 60.5 117 32.5
CsaV3_5G038440 Cucumis sativus L. HOM05D005710 ORTHO05D004657 4.6e-07 60.1 140 33.6
Lsat_1_v5_gn_6_68201 Lactuca sativa HOM05D005186 ORTHO05D006278 4.6e-07 60.1 34 88.2
Pp3c13_3400 Physcomitrium patens HOM05D006269 ORTHO05D001487 4.6e-07 60.1 116 31.0
Pp3c26_10790 Physcomitrium patens HOM05D006269 ORTHO05D001487 4.6e-07 60.1 142 29.6
Aqoxy3G03578 Aquilegia oxysepala HOM05D005710 ORTHO05D004657 6.0e-07 59.7 99 40.4
Actinidia07818 Actinidia chinensis HOM05D005710 ORTHO05D004657 7.9e-07 59.3 99 39.4
Rhsim10G0141000 Rhododendron simsii HOM05D006269 ORTHO05D001487 7.9e-07 59.3 174 26.4
Cpa.g.sc14.156 Carica papaya HOM05D005710 ORTHO05D004657 1.0e-06 58.9 99 38.4
ECA246G0940 Erigeron canadensis HOM05D005710 ORTHO05D004657 1.3e-06 58.5 146 28.8
Duzib187G0917 Durio zibethinus HOM05D005710 ORTHO05D004657 1.8e-06 58.2 99 37.4
Duzib147G0411 Durio zibethinus HOM05D005710 ORTHO05D004657 2.3e-06 57.8 99 37.4
arahy.Tifrunner.gnm1.ann1.YSVF0U Arachis hypogaea HOM05D006269 ORTHO05D001487 3.0e-06 57.4 117 31.6
Pp3c4_24420 Physcomitrium patens HOM05D006269 ORTHO05D001487 3.0e-06 57.4 164 32.3
Atru.chr1.1456 Acer truncatum HOM05D005186 ORTHO05D006278 3.9e-06 57.0 67 44.8
CANSAT64G1937 Cannabis sativa HOM05D005710 ORTHO05D004657 3.9e-06 57.0 151 30.5
Dinv34961 Davidia involucrata HOM05D005710 ORTHO05D004657 3.9e-06 57.0 99 37.4
Lsat_1_v5_gn_3_98801 Lactuca sativa HOM05D005710 ORTHO05D004657 3.9e-06 57.0 114 36.8
MBI06_g04302_MAGBIO Magnolia biondii HOM05D006269 ORTHO05D001487 3.9e-06 57.0 153 31.4
QL02p039943 Quercus lobata HOM05D005710 ORTHO05D004657 3.9e-06 57.0 99 36.4
SGA_v2.0_scaffold68G22835 Striga asiatica HOM05D002685 ORTHO05D001487 3.9e-06 57.0 179 26.3
arahy.Tifrunner.gnm1.ann1.EE1ZRN Arachis hypogaea HOM05D005710 ORTHO05D004657 5.1e-06 56.6 99 38.4
Cfa007637 Carpinus fangiana HOM05D005710 ORTHO05D004657 5.1e-06 56.6 133 30.1
Gohir.D09G010000 Gossypium hirsutum HOM05D005710 ORTHO05D004657 5.1e-06 56.6 100 37.0
Lalb_Chr10g0096511 Lupinus albus HOM05D006269 ORTHO05D001487 5.1e-06 56.6 106 30.2
SEGI_30715 Sequoiadendron giganteum HOM05D014410 ORTHO05D001487 5.1e-06 56.6 108 32.4
Cc07_g04040 Coffea canephora HOM05D005710 ORTHO05D004657 6.7e-06 56.2 119 35.3
vmacro18155 Vaccinium macrocarpon HOM05D005710 ORTHO05D004657 6.7e-06 56.2 102 36.3
arahy.Tifrunner.gnm1.ann1.B1JWTK Arachis hypogaea HOM05D005710 ORTHO05D004657 8.7e-06 55.8 99 38.4
SEGI_19331 Sequoiadendron giganteum HOM05D014410 ORTHO05D001487 8.7e-06 55.8 115 31.3


User provided reference genes

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