Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G479.7 Capsicum annuum HOM05D008195 ORTHO05D010950 2.4e-46 188.3 85 100.0
CAN.G675.32 Capsicum annuum HOM05D008195 ORTHO05D010950 6.7e-33 143.7 77 87.0
CAN.G282.35 Capsicum annuum HOM05D008195 ORTHO05D010950 7.6e-29 130.2 72 84.7
PGSC0003DMG400024640 Solanum tuberosum HOM05D008195 ORTHO05D000743 2.3e-25 118.6 73 75.3
Solyc03g115160.3 Solanum lycopersicum HOM05D008195 ORTHO05D000743 3.0e-25 118.2 72 76.4
Sopen03g034220 Solanum pennellii HOM05D008195 ORTHO05D000743 3.0e-25 118.2 72 76.4
PGSC0003DMG401020463 Solanum tuberosum HOM05D008195 ORTHO05D010950 1.5e-24 115.9 80 68.8
Solyc01g010500.3 Solanum lycopersicum HOM05D001818 ORTHO05D001780 1.3e-23 112.8 80 67.5
PGSC0003DMG400041231 Solanum tuberosum HOM05D008195 ORTHO05D010950 2.1e-23 112.1 72 73.6
Sopen06g024520 Solanum pennellii HOM05D008195 ORTHO05D010950 6.9e-22 107.1 80 66.2
CAN.G111.39 Capsicum annuum HOM05D008195 ORTHO05D000743 3.4e-21 104.8 77 64.9
Solyc06g066200.2 Solanum lycopersicum HOM05D008195 ORTHO05D000743 3.4e-21 104.8 79 64.6
CAN.G1228.30 Capsicum annuum HOM05D008195 ORTHO05D010950 4.5e-21 104.4 74 68.9
PGSC0003DMG400020472 Solanum tuberosum HOM05D008195 ORTHO05D000743 1.7e-20 102.4 81 64.2
PGSC0003DMG400035870 Solanum tuberosum HOM05D008195 ORTHO05D010950 2.9e-20 101.7 75 66.7
Sopen06g021820 Solanum pennellii HOM05D008195 ORTHO05D000743 6.5e-20 100.5 78 62.8
Nitab4.5_0007689g0050 Nicotiana tabacum HOM05D008195 ORTHO05D000743 8.4e-20 100.1 75 66.7
Nitab4.5_0001485g0150 Nicotiana tabacum HOM05D008195 ORTHO05D000743 2.5e-19 98.6 75 66.7
Sopen06g024610 Solanum pennellii HOM05D008195 ORTHO05D000743 2.5e-19 98.6 81 60.5
PGSC0003DMG400037001 Solanum tuberosum HOM05D008195 ORTHO05D000743 7.1e-19 97.1 75 65.3
Solyc06g066140.3 Solanum lycopersicum HOM05D008195 ORTHO05D000743 1.2e-18 96.3 81 58.0
PGSC0003DMG400016768 Solanum tuberosum HOM05D008195 ORTHO05D010950 1.6e-18 95.9 76 60.5
PGSC0003DMG400026134 Solanum tuberosum HOM05D008195 ORTHO05D000743 2.7e-18 95.1 81 59.3
Peaxi162Scf00201g00235 Petunia axillaris HOM05D008195 ORTHO05D000743 1.0e-17 93.2 73 63.0
Solyc03g115180.3 Solanum lycopersicum HOM05D008195 ORTHO05D000743 6.7e-17 90.5 81 54.3
Solyc06g066360.3 Solanum lycopersicum HOM05D008195 ORTHO05D000743 4.8e-15 84.3 80 48.8
Sopen06g021660 Solanum pennellii HOM05D000006 ORTHO05D000001 1.4e-14 82.8 80 48.8
PGSC0003DMG400023177 Solanum tuberosum HOM05D008195 ORTHO05D010950 6.5e-12 73.9 60 56.7
Dinv22785 Davidia involucrata HOM05D001093 ORTHO05D000743 2.5e-11 72.0 77 44.2
Sopen06g024280 Solanum pennellii HOM05D008195 ORTHO05D000743 2.5e-11 72.0 72 51.4
SGA_v2.0_scaffold313G48311 Striga asiatica HOM05D001093 ORTHO05D000743 9.4e-11 70.1 74 45.9
CAN.G479.4 Capsicum annuum HOM05D008195 ORTHO05D000743 6.1e-10 67.4 52 61.5
vmacro16499 Vaccinium macrocarpon HOM05D001093 ORTHO05D000743 6.1e-10 67.4 68 47.1
SalBow5G5623 Salvia bowleyana HOM05D001093 ORTHO05D000743 1.8e-09 65.9 68 48.5
Ah.11g047850 Amaranthus hybridus HOM05D008195 ORTHO05D000743 6.7e-09 63.9 70 41.4
Dinv17406 Davidia involucrata HOM05D001093 ORTHO05D000743 6.7e-09 63.9 76 39.5
Sopen01g006140 Solanum pennellii HOM05D001818 ORTHO05D001780 6.7e-09 63.9 44 70.5
Cc00_g03840 Coffea canephora HOM05D001093 ORTHO05D000743 1.1e-08 63.2 68 45.6
Rhsim12G0151100 Rhododendron simsii HOM05D001093 ORTHO05D000743 1.9e-08 62.4 68 44.1
CAN.G479.2 Capsicum annuum HOM05D008195 ORTHO05D010950 2.5e-08 62.0 47 61.7
Actinidia16122 Actinidia chinensis HOM05D001093 ORTHO05D000743 3.3e-08 61.6 68 41.2
CSS0005519 Camellia sinensis var. sinensis HOM05D001093 ORTHO05D000743 3.3e-08 61.6 68 41.2
AUR62008519 Chenopodium quinoa HOM05D001093 ORTHO05D000743 3.3e-08 61.6 73 39.7
Lj5A103G64 Lonicera japonica HOM05D001093 ORTHO05D000743 4.3e-08 61.2 76 39.5
vmacro17606 Vaccinium macrocarpon HOM05D001093 ORTHO05D000743 4.3e-08 61.2 66 43.9
Actinidia35035 Actinidia chinensis HOM05D001093 ORTHO05D000743 9.7e-08 60.1 68 39.7
AUR62021572 Chenopodium quinoa HOM05D001093 ORTHO05D000743 1.3e-07 59.7 73 38.4
Rhsim08G0146400 Rhododendron simsii HOM05D001093 ORTHO05D000743 1.3e-07 59.7 70 40.0
EL10Ac5g11120 Beta vulgaris HOM05D015602 ORTHO05D006373 2.4e-06 55.5 71 39.4
TAR629G2812 Trochodendron aralioides HOM05D001093 ORTHO05D000743 2.4e-06 55.5 69 40.6
MSTRG.22985 Avicennia marina HOM05D001093 ORTHO05D000743 4.1e-06 54.7 75 40.0
PGSC0003DMG400016782 Solanum tuberosum HOM05D008195 ORTHO05D010950 4.1e-06 54.7 44 59.1
Oeu047262.2 Olea europaea HOM05D001093 ORTHO05D000743 5.3e-06 54.3 39 59.0
Sc12g0006650 Simmondsia chinensis HOM05D001093 ORTHO05D000743 5.3e-06 54.3 71 42.3


User provided reference genes

Program Settings