Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G479.49 Capsicum annuum HOM05D007878 ORTHO05D010022 1.6e-257 892.5 539 100.0
PGSC0003DMG400024662 Solanum tuberosum HOM05D007878 ORTHO05D010022 1.8e-192 676.4 540 75.4
Sopen03g034610 Solanum pennellii HOM05D007878 ORTHO05D010022 6.0e-188 661.4 541 73.9
Solyc03g115620.2 Solanum lycopersicum HOM05D007878 ORTHO05D010022 1.6e-185 653.3 541 74.1
Nitab4.5_0002756g0040 Nicotiana tabacum HOM05D007878 ORTHO05D010022 2.1e-156 556.6 553 67.8
Peaxi162Scf00274g00029 Petunia axillaris HOM05D007878 ORTHO05D010022 3.3e-146 522.7 565 64.8
Nitab4.5_0001211g0090 Nicotiana tabacum HOM05D007878 ORTHO05D010022 4.4e-146 522.3 514 66.1
Cc04_g14870 Coffea canephora HOM05D007878 ORTHO05D010022 6.8e-107 392.1 560 48.0
Actinidia04859 Actinidia chinensis HOM05D007878 ORTHO05D010022 8.9e-99 365.2 571 44.8
Duzib084G0698 Durio zibethinus HOM05D007878 ORTHO05D010022 3.3e-93 346.7 590 40.8
Actinidia09234 Actinidia chinensis HOM05D007878 ORTHO05D010022 3.2e-88 330.1 569 42.4
Oeu031812.2 Olea europaea HOM05D007878 ORTHO05D010022 3.5e-87 326.6 564 44.1
FAN13G2185 Fragaria x ananassa HOM05D007878 ORTHO05D010022 2.3e-86 323.9 606 42.7
FAN08G0929 Fragaria x ananassa HOM05D007878 ORTHO05D010022 1.4e-83 314.7 579 42.0
Potri.015G061500 Populus trichocarpa HOM05D007878 ORTHO05D010022 2.0e-82 310.8 561 39.6
Cfa019282 Carpinus fangiana HOM05D007878 ORTHO05D010022 2.4e-80 303.9 546 40.5
Thecc.03G095300 Theobroma cacao HOM05D007878 ORTHO05D010022 4.2e-80 303.1 591 40.1
FAN18G1316 Fragaria x ananassa HOM05D007878 ORTHO05D010022 7.1e-80 302.4 605 38.2
Nn4g23313 Nelumbo nucifera HOM05D007878 ORTHO05D010022 1.2e-79 301.6 594 39.7
Dinv38757 Davidia involucrata HOM05D007878 ORTHO05D010022 8.7e-78 295.4 589 41.4
RcHm_v2.0_Chr7g0182231 Rosa chinensis HOM05D007878 ORTHO05D010022 3.3e-77 293.5 604 40.1
Atru.chr9.783 Acer truncatum HOM05D007878 ORTHO05D010022 4.0e-75 286.6 572 37.9
Prupe.5G199300 Prunus persica HOM05D007878 ORTHO05D010022 4.0e-75 286.6 579 37.1
Aqoxy3G03537 Aquilegia oxysepala HOM05D007878 ORTHO05D010022 1.5e-74 284.6 606 39.1
DCAR_016585 Daucus carota HOM05D007878 ORTHO05D010022 2.6e-74 283.9 563 38.7
CiPaw.11G048800 Carya illinoinensis HOM05D007878 ORTHO05D010022 3.4e-74 283.5 592 37.8
CiPaw.11G048500 Carya illinoinensis HOM05D007878 ORTHO05D010022 2.9e-73 280.4 587 39.7
TAR374G1173 Trochodendron aralioides HOM05D007878 ORTHO05D010022 7.1e-72 275.8 600 37.0
FvH4_5g14430 Fragaria vesca HOM05D007878 ORTHO05D010022 2.5e-69 267.3 605 37.5
PGR083G0831 Punica granatum HOM05D007878 ORTHO05D010022 2.5e-69 267.3 593 39.1
Oeu046990.1 Olea europaea HOM05D007878 ORTHO05D010022 3.3e-69 266.9 507 42.4
Manes.14G082500 Manihot esculenta HOM05D007878 ORTHO05D010022 7.4e-69 265.8 583 37.6
Migut.I00229 Erythranthe guttata HOM05D007878 ORTHO05D010022 2.8e-68 263.8 538 38.8
Gohir.A03G068300 Gossypium hirsutum HOM05D007878 ORTHO05D010022 4.8e-68 263.1 553 35.6
Manes.06G088500 Manihot esculenta HOM05D007878 ORTHO05D010022 1.1e-67 261.9 587 38.0
COL.COLO4_38427 Corchorus olitorius HOM05D007878 ORTHO05D010022 7.6e-66 255.8 576 39.9
MD14G1206000 Malus domestica HOM05D007878 ORTHO05D010022 2.2e-65 254.2 577 35.9
Gohir.D03G094900 Gossypium hirsutum HOM05D007878 ORTHO05D010022 7.1e-64 249.2 550 34.4
Ciclev10024608m.g Citrus clementina HOM05D007878 ORTHO05D010022 2.1e-63 247.7 543 36.8
TWI60G1109 Tripterygium wilfordii HOM05D007878 ORTHO05D010022 1.3e-62 245.0 585 36.1
Oeu047269.3 Olea europaea HOM05D007878 ORTHO05D010022 3.0e-62 243.8 518 41.5
Phvul.003G187300 Phaseolus vulgaris HOM05D007878 ORTHO05D010022 3.3e-61 240.4 548 36.1
Glyma.17G103300 Glycine max HOM05D007878 ORTHO05D010022 4.3e-61 240.0 548 38.3
Oeu052466.1 Olea europaea HOM05D007878 ORTHO05D010022 6.2e-60 236.1 556 38.7
Oeu052465.1 Olea europaea HOM05D007878 ORTHO05D010022 8.2e-60 235.7 556 38.7
MBI16_g14990_MAGBIO Magnolia biondii HOM05D007878 ORTHO05D010022 2.4e-59 234.2 582 35.9
Medtr4g109150 Medicago truncatula HOM05D007878 ORTHO05D010022 5.0e-57 226.5 554 35.9
Gorai.003G099100 Gossypium raimondii HOM05D007878 ORTHO05D010022 3.2e-56 223.8 514 33.3
Lj4g0012809 Lotus japonicus HOM05D007878 ORTHO05D010022 2.7e-55 220.7 546 36.3
CANSAT80G1712 Cannabis sativa HOM05D007878 ORTHO05D010022 1.6e-52 211.5 560 33.2
Nn3g17364 Nelumbo nucifera HOM05D007878 ORTHO05D010022 3.1e-51 207.2 429 36.8
Ca_21797_v3 Cicer arietinum L. HOM05D007878 ORTHO05D010022 4.1e-51 206.8 516 34.9
QL10p018347 Quercus lobata HOM05D007878 ORTHO05D010022 6.9e-51 206.1 524 36.1
ClCG06G015920 Citrullus lanatus HOM05D007878 ORTHO05D010022 2.6e-50 204.1 565 35.6
MD06G1198500 Malus domestica HOM05D007878 ORTHO05D010022 5.9e-50 203.0 623 32.9
Cpa.g.sc13.307 Carica papaya HOM05D007878 ORTHO05D010022 7.7e-50 202.6 513 34.7
arahy.Tifrunner.gnm1.ann1.3W98EY Arachis hypogaea HOM05D007878 ORTHO05D010022 1.7e-49 201.4 548 31.9
MELO3C017199.2 Cucumis melo HOM05D007878 ORTHO05D010022 1.7e-49 201.4 556 32.6
CsaV3_1G002630 Cucumis sativus L. HOM05D007878 ORTHO05D010022 1.9e-48 198.0 554 33.2
PSO063G3897 Papaver somniferum HOM05D007878 ORTHO05D010022 1.9e-48 198.0 591 30.8
Sed0013205 Sechium edule HOM05D007878 ORTHO05D010022 3.3e-45 187.2 575 32.3
GSVIVG01007952001 Vitis vinifera HOM05D007878 ORTHO05D010022 5.7e-45 186.4 477 37.1
ECA246G4297 Erigeron canadensis HOM05D007878 ORTHO05D010022 1.3e-44 185.3 510 33.3
Eucgr.B00555 Eucalyptus grandis HOM05D007878 ORTHO05D010022 5.5e-40 169.9 485 35.5
TPR.G1999 Trifolium pratense HOM05D007878 ORTHO05D010022 5.5e-40 169.9 551 34.5
HanXRQChr05g0157141 Helianthus annuus HOM05D007878 ORTHO05D010022 6.1e-39 166.4 490 33.5
Haze_07666 Corylus avellana HOM05D007878 ORTHO05D010022 5.3e-35 153.3 501 31.5
ATR0730G174 Amborella trichopoda HOM05D007878 ORTHO05D010022 4.5e-34 150.2 295 36.9
arahy.Tifrunner.gnm1.ann1.QT4JJ4 Arachis hypogaea HOM05D007878 ORTHO05D010022 2.2e-33 147.9 483 31.1
Psat4g049000 Pisum sativum HOM05D007878 ORTHO05D010022 8.5e-33 146.0 548 31.4
CSS0029238 Camellia sinensis var. sinensis HOM05D000957 ORTHO05D000754 3.6e-31 140.6 492 29.5
Lsat_1_v5_gn_5_21161 Lactuca sativa HOM05D007878 ORTHO05D010022 2.0e-29 134.8 393 32.8
DCAR_026030 Daucus carota HOM05D000094 ORTHO05D003883 1.1e-27 129.0 704 25.7
DCAR_021514 Daucus carota HOM05D007878 ORTHO05D010022 9.1e-27 125.9 317 35.3
Atru.chr9.308 Acer truncatum HOM05D007878 ORTHO05D010022 4.5e-18 97.1 207 34.3
MSTRG.22991 Avicennia marina HOM05D007878 ORTHO05D010022 1.5e-16 92.0 109 56.9
SEGI_16968 Sequoiadendron giganteum HOM05D001827 ORTHO05D001790 2.0e-13 81.6 625 26.7
arahy.Tifrunner.gnm1.ann1.0CJ0KN Arachis hypogaea HOM05D007878 ORTHO05D010022 3.7e-12 77.4 125 41.6
arahy.Tifrunner.gnm1.ann1.H3BYSM Arachis hypogaea HOM05D007878 ORTHO05D010022 3.7e-12 77.4 125 42.4
SEGI_06346 Sequoiadendron giganteum HOM05D001827 ORTHO05D001790 5.4e-11 73.6 427 23.9
Zm00001eb400500 Zea mays HOM05D007878 ORTHO05D010022 5.4e-11 73.6 267 26.6
Aa31LG5G11980 Aethionema arabicum HOM05D001812 ORTHO05D001874 1.0e-09 69.3 584 21.7
Glyma.15G120700 Glycine max HOM05D001827 ORTHO05D001790 1.7e-09 68.6 306 28.8
Lalb_Chr07g0176921 Lupinus albus HOM05D001827 ORTHO05D001790 6.6e-09 66.6 563 23.6
Cfa016913 Carpinus fangiana HOM05D001827 ORTHO05D001790 1.5e-08 65.5 411 23.4
Lj4g0001684 Lotus japonicus HOM05D001827 ORTHO05D001790 2.8e-07 61.2 347 25.6
Lj6g0012256 Lotus japonicus HOM05D001827 ORTHO05D001790 2.8e-07 61.2 307 26.1
Haze_09842 Corylus avellana HOM05D001827 ORTHO05D001790 4.7e-07 60.5 409 22.7
arahy.Tifrunner.gnm1.ann1.L4SZG2 Arachis hypogaea HOM05D001827 ORTHO05D001790 6.1e-07 60.1 585 24.1
CsaV3_1G015450 Cucumis sativus L. HOM05D001827 ORTHO05D001790 1.8e-06 58.5 556 24.3
Aa31LG3G11780 Aethionema arabicum HOM05D001827 ORTHO05D001790 3.0e-06 57.8 576 21.7
Ca_00766_v3 Cicer arietinum L. HOM05D001827 ORTHO05D001790 4.0e-06 57.4 323 26.9
Migut.H01749 Erythranthe guttata HOM05D001827 ORTHO05D001790 6.8e-06 56.6 546 25.6
Medtr3g007920 Medicago truncatula HOM05D001827 ORTHO05D001790 6.8e-06 56.6 583 22.0
Os12g0271600 Oryza sativa ssp. japonica HOM05D001827 ORTHO05D001790 8.9e-06 56.2 220 26.4


User provided reference genes

Program Settings