Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G479.31 Capsicum annuum HOM05D004709 ORTHO05D005669 5.3e-41 170.6 89 100.0
Solyc03g115490.1 Solanum lycopersicum HOM05D004709 ORTHO05D005669 1.7e-39 165.6 89 95.5
Sopen03g034490 Solanum pennellii HOM05D004709 ORTHO05D005669 1.7e-39 165.6 89 95.5
PGSC0003DMG400024653 Solanum tuberosum HOM05D004709 ORTHO05D005669 1.7e-39 165.6 89 95.5
Nitab4.5_0004511g0070 Nicotiana tabacum HOM05D004709 ORTHO05D005669 8.0e-37 156.8 86 94.2
Nitab4.5_0002881g0040 Nicotiana tabacum HOM05D004709 ORTHO05D005669 1.8e-36 155.6 86 93.0
HanXRQChr05g0157171 Helianthus annuus HOM05D004709 ORTHO05D005669 2.6e-32 141.7 89 77.5
COL.COLO4_36893 Corchorus olitorius HOM05D004709 ORTHO05D005669 8.5e-31 136.7 87 77.0
Nn4g23362 Nelumbo nucifera HOM05D004709 ORTHO05D005669 8.5e-31 136.7 86 76.7
Thecc.03G097000 Theobroma cacao HOM05D004709 ORTHO05D005669 1.1e-30 136.3 87 78.2
Lsat_1_v5_gn_5_22101 Lactuca sativa HOM05D004709 ORTHO05D005669 1.9e-30 135.6 87 73.6
Peaxi162Scf00106g00072 Petunia axillaris HOM05D004709 ORTHO05D005669 1.9e-30 135.6 82 84.1
CiPaw.11G049800 Carya illinoinensis HOM05D004709 ORTHO05D005669 2.5e-30 135.2 86 77.9
QL10p018658 Quercus lobata HOM05D004709 ORTHO05D005669 3.2e-30 134.8 84 81.0
MBI16_g16369_MAGBIO Magnolia biondii HOM05D004709 ORTHO05D005669 4.2e-30 134.4 86 73.3
Prupe.3G258000 Prunus persica HOM05D004709 ORTHO05D005669 4.2e-30 134.4 87 77.0
Gohir.A12G180600 Gossypium hirsutum HOM05D004709 ORTHO05D005669 5.5e-30 134.0 87 74.7
PSO478G1650 Papaver somniferum HOM05D004709 ORTHO05D005669 5.5e-30 134.0 86 73.3
Gohir.D12G183300 Gossypium hirsutum HOM05D004709 ORTHO05D005669 7.2e-30 133.7 87 74.7
MD00G1156500 Malus domestica HOM05D004709 ORTHO05D005669 9.4e-30 133.3 84 76.2
PGR083G1512 Punica granatum HOM05D004709 ORTHO05D005669 9.4e-30 133.3 86 77.9
COL.COLO4_31014 Corchorus olitorius HOM05D004709 ORTHO05D005669 1.2e-29 132.9 87 74.7
Sed0002201 Sechium edule HOM05D004709 ORTHO05D005669 1.2e-29 132.9 86 75.6
MD09G1062400 Malus domestica HOM05D004709 ORTHO05D005669 1.6e-29 132.5 84 77.4
Duzib205G1485 Durio zibethinus HOM05D004709 ORTHO05D005669 2.1e-29 132.1 87 73.6
Aqoxy3G03572 Aquilegia oxysepala HOM05D004709 ORTHO05D005669 2.7e-29 131.7 83 74.7
TAR622G0455 Trochodendron aralioides HOM05D004709 ORTHO05D005669 3.6e-29 131.3 84 77.4
Rhsim08G0148900 Rhododendron simsii HOM05D004709 ORTHO05D005669 4.7e-29 131.0 83 79.5
TWI18G0167 Tripterygium wilfordii HOM05D004709 ORTHO05D005669 4.7e-29 131.0 88 73.9
TAR371G0159 Trochodendron aralioides HOM05D004709 ORTHO05D005669 4.7e-29 131.0 84 77.4
MELO3C002013.2 Cucumis melo HOM05D004709 ORTHO05D005669 8.0e-29 130.2 89 71.9
ECA246G5156 Erigeron canadensis HOM05D004709 ORTHO05D005669 8.0e-29 130.2 83 77.1
ClCG04G011960 Citrullus lanatus HOM05D004709 ORTHO05D005669 1.0e-28 129.8 86 73.3
Gorai.008G196600 Gossypium raimondii HOM05D004709 ORTHO05D005669 1.0e-28 129.8 87 73.6
Duzib084G0757 Durio zibethinus HOM05D004709 ORTHO05D005669 1.4e-28 129.4 87 73.6
CsaV3_1G005830 Cucumis sativus L. HOM05D004709 ORTHO05D005669 1.8e-28 129.0 89 70.8
Nn3g17388 Nelumbo nucifera HOM05D004709 ORTHO05D005669 1.8e-28 129.0 86 70.9
ATR0064G063 Amborella trichopoda HOM05D004709 ORTHO05D005669 2.3e-28 128.6 87 73.6
CANSAT56G2672 Cannabis sativa HOM05D004709 ORTHO05D005669 3.0e-28 128.3 85 71.8
Cpa.g.sc94.6 Carica papaya HOM05D004709 ORTHO05D005669 3.0e-28 128.3 87 72.4
Eucgr.B00568 Eucalyptus grandis HOM05D004709 ORTHO05D005669 3.0e-28 128.3 88 71.6
RcHm_v2.0_Chr2g0166371 Rosa chinensis HOM05D004709 ORTHO05D005669 4.0e-28 127.9 84 73.8
Manes.06G087400 Manihot esculenta HOM05D004709 ORTHO05D005669 5.2e-28 127.5 81 77.8
Sc10g0003220 Simmondsia chinensis HOM05D004709 ORTHO05D005669 5.2e-28 127.5 88 70.5
ClCG06G015840 Citrullus lanatus HOM05D004709 ORTHO05D005669 6.7e-28 127.1 85 71.8
Atru.chr2.2420 Acer truncatum HOM05D004709 ORTHO05D005669 8.8e-28 126.7 86 70.9
Nn7g35950 Nelumbo nucifera HOM05D004709 ORTHO05D005669 1.2e-27 126.3 83 73.5
AUR62042435 Chenopodium quinoa HOM05D004709 ORTHO05D005669 2.0e-27 125.6 84 71.4
MELO3C017207.2 Cucumis melo HOM05D004709 ORTHO05D005669 2.0e-27 125.6 85 68.2
SalBow5G3312 Salvia bowleyana HOM05D004709 ORTHO05D005669 2.0e-27 125.6 84 71.4
Ciclev10022528m.g Citrus clementina HOM05D004709 ORTHO05D005669 2.6e-27 125.2 86 67.4
FvH4_6g47340 Fragaria vesca HOM05D004709 ORTHO05D005669 2.6e-27 125.2 88 69.3
Zm00001eb398330 Zea mays HOM05D004709 ORTHO05D005669 2.6e-27 125.2 86 73.3
AUR62008495 Chenopodium quinoa HOM05D004709 ORTHO05D005669 3.3e-27 124.8 88 64.8
FAN14G4554 Fragaria x ananassa HOM05D004709 ORTHO05D005669 3.3e-27 124.8 86 69.8
Phvul.008G035200 Phaseolus vulgaris HOM05D004709 ORTHO05D005669 3.3e-27 124.8 87 69.0
AUR62018162 Chenopodium quinoa HOM05D004709 ORTHO05D005669 4.4e-27 124.4 84 70.2
Cfa019297 Carpinus fangiana HOM05D004709 ORTHO05D005669 5.7e-27 124.0 84 72.6
Migut.D01673 Erythranthe guttata HOM05D004709 ORTHO05D005669 7.5e-27 123.6 85 70.6
Sed0019301 Sechium edule HOM05D004709 ORTHO05D005669 7.5e-27 123.6 86 67.4
Aa31LG11G2140 Aethionema arabicum HOM05D004709 ORTHO05D005669 9.7e-27 123.2 86 72.1
Lsat_1_v5_gn_1_13721 Lactuca sativa HOM05D004709 ORTHO05D005669 9.7e-27 123.2 86 69.8
Manes.14G083600 Manihot esculenta HOM05D004709 ORTHO05D005669 9.7e-27 123.2 81 74.1
THA.LOC104801321 Tarenaya hassleriana HOM05D004709 ORTHO05D005669 1.7e-26 122.5 86 70.9
Prupe.5G200900 Prunus persica HOM05D004709 ORTHO05D005669 2.2e-26 122.1 85 69.4
Ah.10g032000 Amaranthus hybridus HOM05D004709 ORTHO05D005669 2.8e-26 121.7 83 71.1
EL10Ac2g03100 Beta vulgaris HOM05D004709 ORTHO05D005669 3.7e-26 121.3 85 68.2
FAN09G0998 Fragaria x ananassa HOM05D004709 ORTHO05D005669 3.7e-26 121.3 86 67.4
Glyma.08G242600 Glycine max HOM05D004709 ORTHO05D005669 3.7e-26 121.3 87 69.0
Gohir.A03G069100 Gossypium hirsutum HOM05D004709 ORTHO05D005669 3.7e-26 121.3 82 72.0
Os08g0239000 Oryza sativa ssp. japonica HOM05D004709 ORTHO05D005669 3.7e-26 121.3 85 69.4
Potri.009G079800 Populus trichocarpa HOM05D004709 ORTHO05D005669 4.8e-26 120.9 84 72.6
HanXRQChr04g0101451 Helianthus annuus HOM05D004709 ORTHO05D005669 8.3e-26 120.2 84 67.9
Sed0023667 Sechium edule HOM05D004709 ORTHO05D005669 8.3e-26 120.2 86 69.8
FAN05G1711 Fragaria x ananassa HOM05D004709 ORTHO05D005669 1.1e-25 119.8 86 66.3
Ca_06818_v3 Cicer arietinum L. HOM05D004709 ORTHO05D005669 2.4e-25 118.6 85 67.1
FAN02G1874 Fragaria x ananassa HOM05D004709 ORTHO05D005669 3.1e-25 118.2 88 65.9
Gohir.D03G095600 Gossypium hirsutum HOM05D004709 ORTHO05D005669 3.1e-25 118.2 82 70.7
Gorai.003G100300 Gossypium raimondii HOM05D004709 ORTHO05D005669 3.1e-25 118.2 82 70.7
Os10g0406600 Oryza sativa ssp. japonica HOM05D004709 ORTHO05D005669 3.1e-25 118.2 86 67.4
Zm00001eb011200 Zea mays HOM05D004709 ORTHO05D005669 3.1e-25 118.2 86 68.6
Glyma.18G264800 Glycine max HOM05D004709 ORTHO05D005669 4.1e-25 117.9 87 65.5
Lalb_Chr10g0093091 Lupinus albus HOM05D004709 ORTHO05D005669 5.3e-25 117.5 84 66.7
DCAR_013071 Daucus carota HOM05D000316 ORTHO05D000374 4.5e-24 114.4 78 75.6
Lj1g0000800 Lotus japonicus HOM05D004709 ORTHO05D005669 4.5e-24 114.4 86 68.6
Rhsim12G0152500 Rhododendron simsii HOM05D004709 ORTHO05D005669 5.9e-24 114.0 78 74.4
Dinv10689 Davidia involucrata HOM05D004709 ORTHO05D005669 7.7e-24 113.6 72 75.0
Medtr0287s0050 Medicago truncatula HOM05D004709 ORTHO05D005669 1.0e-23 113.2 85 64.7
Medtr7g012870 Medicago truncatula HOM05D004709 ORTHO05D005669 1.0e-23 113.2 85 64.7
SHI27018 Sapria himalayana HOM05D004709 ORTHO05D005669 1.7e-23 112.5 81 65.4
HanXRQChr17g0545301 Helianthus annuus HOM05D004709 ORTHO05D005669 6.5e-23 110.5 84 64.3
Psat3g200920 Pisum sativum HOM05D004709 ORTHO05D005669 8.5e-23 110.2 86 61.6
Actinidia09247 Actinidia chinensis HOM05D004709 ORTHO05D005669 1.9e-22 109.0 69 78.3
Thhalv10005205m.g Eutrema salsugineum HOM05D004709 ORTHO05D005669 2.5e-22 108.6 83 63.9
Mapoly0030s0074 Marchantia polymorpha HOM05D004709 ORTHO05D005669 4.2e-22 107.8 86 59.3
AL8G37880 Arabidopsis lyrata HOM05D004709 ORTHO05D005669 7.2e-22 107.1 83 62.7
CARHR274970 Cardamine hirsuta HOM05D004709 ORTHO05D005669 1.2e-21 106.3 83 61.4
C02p61460 Brassica napus HOM05D004709 ORTHO05D005669 3.6e-21 104.8 82 59.8
BolC2t12197H Brassica oleracea HOM05D004709 ORTHO05D005669 3.6e-21 104.8 82 59.8
MD08G1088600 Malus domestica HOM05D004709 ORTHO05D005669 3.6e-21 104.8 81 64.2
Pp3c1_9190 Physcomitrium patens HOM05D004709 ORTHO05D005669 4.7e-21 104.4 87 56.3
AT5G61220 Arabidopsis thaliana HOM05D004709 ORTHO05D005669 6.1e-21 104.0 83 61.4
Carub.0008s2188 Capsella rubella HOM05D004709 ORTHO05D005669 6.1e-21 104.0 83 60.2
Sp2g24450 Schrenkiella parvula HOM05D004709 ORTHO05D005669 6.1e-21 104.0 80 63.8
Dinv38784 Davidia involucrata HOM05D004709 ORTHO05D005669 8.0e-21 103.6 62 79.0
BcaC06g33217 Brassica carinata HOM05D004709 ORTHO05D005669 1.0e-20 103.2 83 59.0
Actinidia04845 Actinidia chinensis HOM05D004709 ORTHO05D005669 1.8e-20 102.4 61 82.0
C07p44900 Brassica napus HOM05D004709 ORTHO05D005669 1.8e-20 102.4 83 59.0
BolC7t45013H Brassica oleracea HOM05D004709 ORTHO05D005669 1.8e-20 102.4 83 59.0
GSVIVG01007919001 Vitis vinifera HOM05D004709 ORTHO05D005669 3.0e-20 101.7 68 67.6
A03p46850 Brassica napus HOM05D004709 ORTHO05D005669 4.0e-20 101.3 83 57.8
Sc04g0003050 Simmondsia chinensis HOM05D004709 ORTHO05D005669 4.0e-20 101.3 84 57.1
BraA02t09093Z Brassica rapa HOM05D004709 ORTHO05D005669 5.2e-20 100.9 80 60.0
Gohir.D12G183150 Gossypium hirsutum HOM05D004709 ORTHO05D005669 5.2e-20 100.9 67 73.1
A02p41520 Brassica napus HOM05D004709 ORTHO05D005669 6.8e-20 100.5 80 60.0
BcaC07g40932 Brassica carinata HOM05D004709 ORTHO05D005669 1.2e-19 99.8 80 58.8
C08p39260 Brassica napus HOM05D004709 ORTHO05D005669 1.2e-19 99.8 80 58.8
AUR62021597 Chenopodium quinoa HOM05D004709 ORTHO05D005669 1.5e-19 99.4 90 55.6
BcaC01g01257 Brassica carinata HOM05D004709 ORTHO05D005669 3.4e-19 98.2 80 58.8
C06p42660 Brassica napus HOM05D004709 ORTHO05D005669 3.4e-19 98.2 80 60.0
BolC3t21308H Brassica oleracea HOM05D004709 ORTHO05D005669 3.4e-19 98.2 80 58.8
C07p56170 Brassica napus HOM05D004709 ORTHO05D005669 4.4e-19 97.8 80 58.8
BolC6t39173H Brassica oleracea HOM05D004709 ORTHO05D005669 4.4e-19 97.8 80 58.8
C03p89860 Brassica napus HOM05D004709 ORTHO05D005669 5.7e-19 97.4 80 58.8
BraA03t13805Z Brassica rapa HOM05D004709 ORTHO05D005669 5.7e-19 97.4 83 55.4
BcaC06g33172 Brassica carinata HOM05D004709 ORTHO05D005669 7.5e-19 97.1 85 57.6
Atru.chr9.371 Acer truncatum HOM05D004709 ORTHO05D005669 1.7e-18 95.9 80 60.0
A03p02360 Brassica napus HOM05D004709 ORTHO05D005669 2.8e-18 95.1 79 57.0
BcaC03g18433 Brassica carinata HOM05D004709 ORTHO05D005669 3.7e-18 94.7 80 57.5
C02p63420 Brassica napus HOM05D004709 ORTHO05D005669 3.7e-18 94.7 80 57.5
BolC2t12409H Brassica oleracea HOM05D004709 ORTHO05D005669 3.7e-18 94.7 80 57.5
CBR_g38475 Chara braunii HOM05D004709 ORTHO05D005669 6.3e-18 94.0 84 52.4
CSS0011072 Camellia sinensis var. sinensis HOM05D004709 ORTHO05D005669 2.0e-16 89.0 62 71.0
Pp3c9_6850 Physcomitrium patens HOM05D004709 ORTHO05D005669 2.0e-16 89.0 86 51.2
Medtr7g083770 Medicago truncatula HOM05D004709 ORTHO05D005669 2.7e-16 88.6 73 57.5
C05p13760 Brassica napus HOM05D004709 ORTHO05D005669 5.9e-16 87.4 73 60.3
BolC5t30114H Brassica oleracea HOM05D004709 ORTHO05D005669 5.9e-16 87.4 73 60.3
Carub.0006s3376 Capsella rubella HOM05D004709 ORTHO05D005669 5.9e-16 87.4 81 56.8
BcaC05g25635 Brassica carinata HOM05D004709 ORTHO05D005669 7.7e-16 87.0 73 60.3
BraA07t31299Z Brassica rapa HOM05D004709 ORTHO05D005669 1.7e-15 85.9 73 58.9
Cre08.g382850 Chlamydomonas reinhardtii HOM05D004709 ORTHO05D005669 7.2e-14 80.5 79 50.6
Sabra09G0061800 Salix brachista HOM05D004709 ORTHO05D005669 1.6e-13 79.3 57 68.4
SMO174G0212 Selaginella moellendorffii HOM05D004709 ORTHO05D005669 3.6e-13 78.2 83 53.0
PRCOL_00002203 Prasinoderma coloniale HOM05D004709 ORTHO05D005669 4.0e-12 74.7 84 47.6
CARHR099960 Cardamine hirsuta HOM05D004709 ORTHO05D005669 7.5e-11 70.5 66 51.5
unitig_37.g12784 Utricularia gibba HOM05D004709 ORTHO05D005669 2.8e-10 68.6 59 57.6
BcaC03g15765 Brassica carinata HOM05D004709 ORTHO05D005669 1.1e-09 66.6 80 50.0
CDE02G0474 Ceratophyllum demersum HOM05D004709 ORTHO05D005669 2.0e-08 62.4 44 72.7
Cfa024147 Carpinus fangiana HOM05D004709 ORTHO05D005669 1.7e-07 59.3 69 42.0
Cc00_g02290 Coffea canephora HOM05D004709 ORTHO05D005669 5.0e-07 57.8 35 82.9
MCO16G339 Micromonas commoda HOM05D004709 ORTHO05D005669 2.5e-06 55.5 79 36.7
BraA10t43343Z Brassica rapa HOM05D004709 ORTHO05D005669 5.6e-06 54.3 49 53.1


User provided reference genes

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