Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G479.14 Capsicum annuum HOM05D003990 ORTHO05D004925 4.8e-88 327.8 165 100.0
PGSC0003DMG400005851 Solanum tuberosum HOM05D003990 ORTHO05D004925 1.7e-48 196.4 134 74.6
Solyc08g008530.1 Solanum lycopersicum HOM05D003990 ORTHO05D004925 4.9e-48 194.9 133 75.2
Sopen08g004380 Solanum pennellii HOM05D003990 ORTHO05D004925 7.1e-47 191.0 133 73.7
Nitab4.5_0000673g0130 Nicotiana tabacum HOM05D003990 ORTHO05D004925 5.6e-44 181.4 130 70.0
CAN.G792.28 Capsicum annuum HOM05D003990 ORTHO05D004925 7.3e-44 181.0 133 69.9
Nitab4.5_0001962g0040 Nicotiana tabacum HOM05D003990 ORTHO05D004925 2.3e-42 176.0 115 76.5
Cpa.g.sc175.15 Carica papaya HOM05D003990 ORTHO05D004925 1.4e-39 166.8 133 63.2
Lj8A201T86 Lonicera japonica HOM05D003990 ORTHO05D004925 7.1e-39 164.5 133 63.2
Dinv38683 Davidia involucrata HOM05D003990 ORTHO05D001284 2.1e-38 162.9 131 64.9
Gorai.003G075400 Gossypium raimondii HOM05D003990 ORTHO05D004925 2.1e-38 162.9 132 64.4
Peaxi162Scf00102g01878 Petunia axillaris HOM05D003990 ORTHO05D000951 2.1e-38 162.9 129 65.9
Duzib205G1059 Durio zibethinus HOM05D003990 ORTHO05D004925 1.0e-37 160.6 133 60.9
Gohir.A02G097800 Gossypium hirsutum HOM05D003990 ORTHO05D004925 1.7e-37 159.8 130 63.8
Gohir.D03G086700 Gossypium hirsutum HOM05D003990 ORTHO05D004925 3.0e-37 159.1 132 62.9
THA.LOC104813054 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 3.0e-37 159.1 134 59.0
Atru.chr9.1910 Acer truncatum HOM05D003990 ORTHO05D004925 5.1e-37 158.3 134 60.4
TAR629G1984 Trochodendron aralioides HOM05D003990 ORTHO05D004925 8.6e-37 157.5 133 60.9
Cfa011935 Carpinus fangiana HOM05D003990 ORTHO05D004925 1.1e-36 157.1 130 59.2
CiPaw.12G078400 Carya illinoinensis HOM05D003990 ORTHO05D004925 1.9e-36 156.4 137 59.1
COL.COLO4_10785 Corchorus olitorius HOM05D003990 ORTHO05D004925 1.9e-36 156.4 127 60.6
MD06G1117400 Malus domestica HOM05D003990 ORTHO05D004925 1.9e-36 156.4 133 58.6
AUR62007043 Chenopodium quinoa HOM05D003990 ORTHO05D004925 2.5e-36 156.0 131 63.4
Oeu022039.1 Olea europaea HOM05D003990 ORTHO05D004925 3.3e-36 155.6 133 60.2
Thecc.03G222400 Theobroma cacao HOM05D003990 ORTHO05D004925 3.3e-36 155.6 133 60.2
FAN18G2679 Fragaria x ananassa HOM05D003990 ORTHO05D004925 5.6e-36 154.8 126 58.7
AT4G10750 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 7.3e-36 154.5 134 59.0
FAN13G1570 Fragaria x ananassa HOM05D003990 ORTHO05D004925 7.3e-36 154.5 126 59.5
QL02p029212 Quercus lobata HOM05D003990 ORTHO05D004925 7.3e-36 154.5 133 54.9
RcHm_v2.0_Chr7g0186781 Rosa chinensis HOM05D003990 ORTHO05D004925 7.3e-36 154.5 131 58.8
Aa31LG9G11320 Aethionema arabicum HOM05D003990 ORTHO05D004925 1.2e-35 153.7 135 59.3
Thhalv10029450m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 1.2e-35 153.7 134 59.0
Rhsim02G0251300 Rhododendron simsii HOM05D003990 ORTHO05D004925 1.2e-35 153.7 122 63.9
Manes.11G125600 Manihot esculenta HOM05D003990 ORTHO05D004925 1.6e-35 153.3 134 59.0
Prupe.5G128500 Prunus persica HOM05D003990 ORTHO05D004925 1.6e-35 153.3 133 57.1
AL6G44800 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 2.1e-35 152.9 134 59.0
AUR62019907 Chenopodium quinoa HOM05D003990 ORTHO05D004925 2.1e-35 152.9 130 63.1
Carub.0006s2953 Capsella rubella HOM05D003990 ORTHO05D004925 3.6e-35 152.1 134 59.7
Aqoxy7G00029 Aquilegia oxysepala HOM05D003990 ORTHO05D004925 4.7e-35 151.8 124 62.9
A09p28480 Brassica napus HOM05D003990 ORTHO05D004925 4.7e-35 151.8 134 58.2
DCAR_009092 Daucus carota HOM05D003990 ORTHO05D004925 4.7e-35 151.8 133 57.1
CARHR255860 Cardamine hirsuta HOM05D003990 ORTHO05D004925 6.2e-35 151.4 134 57.5
Haze_14077 Corylus avellana HOM05D003990 ORTHO05D004925 6.2e-35 151.4 125 58.4
Potri.003G145700 Populus trichocarpa HOM05D003990 ORTHO05D004925 6.2e-35 151.4 133 58.6
Hma1.2p1_0212F.1_g090230 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 8.1e-35 151.0 142 59.9
Sc01g0010590 Simmondsia chinensis HOM05D003990 ORTHO05D004925 8.1e-35 151.0 134 58.2
EL10Ac5g12450 Beta vulgaris HOM05D003990 ORTHO05D004925 1.4e-34 150.2 120 66.7
BcaB01g01511 Brassica carinata HOM05D003990 ORTHO05D004925 1.4e-34 150.2 134 58.2
CSS0010282 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 1.4e-34 150.2 121 62.8
CSS0021441 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 1.4e-34 150.2 121 62.8
BraA09t38413Z Brassica rapa HOM05D003990 ORTHO05D004925 1.8e-34 149.8 134 57.5
Cc08_g16660 Coffea canephora HOM05D003990 ORTHO05D004925 2.4e-34 149.4 130 60.0
ECA246G0738 Erigeron canadensis HOM05D003273 ORTHO05D004023 3.1e-34 149.1 135 57.8
Lsat_1_v5_gn_3_13681 Lactuca sativa HOM05D003990 ORTHO05D004925 3.1e-34 149.1 140 58.6
Sabra03G0105900 Salix brachista HOM05D003990 ORTHO05D004925 5.2e-34 148.3 133 56.4
BcaC04g21069 Brassica carinata HOM05D003990 ORTHO05D004925 6.9e-34 147.9 134 57.5
C09p36050 Brassica napus HOM05D003990 ORTHO05D004925 6.9e-34 147.9 134 57.5
BolC9t56444H Brassica oleracea HOM05D003990 ORTHO05D004925 6.9e-34 147.9 134 57.5
Ah.12g053140 Amaranthus hybridus HOM05D003990 ORTHO05D004925 1.2e-33 147.1 118 65.3
HanXRQChr06g0166861 Helianthus annuus HOM05D003990 ORTHO05D004925 1.5e-33 146.7 137 55.5
Sp6g06750 Schrenkiella parvula HOM05D003990 ORTHO05D004925 1.5e-33 146.7 134 57.5
Ciclev10020878m.g Citrus clementina HOM05D003990 ORTHO05D004925 2.0e-33 146.4 126 59.5
CANSAT21G0847 Cannabis sativa HOM05D003990 ORTHO05D004925 2.6e-33 146.0 140 55.0
Lalb_Chr17g0338551 Lupinus albus HOM05D003990 ORTHO05D004925 7.6e-33 144.4 134 58.2
MSTRG.13719 Avicennia marina HOM05D003990 ORTHO05D004925 2.9e-32 142.5 126 61.1
Eucgr.D01688 Eucalyptus grandis HOM05D003990 ORTHO05D004925 2.9e-32 142.5 133 57.1
TWI60G1311 Tripterygium wilfordii HOM05D003990 ORTHO05D004925 8.4e-32 141.0 134 55.2
PSO384G4439 Papaver somniferum HOM05D003990 ORTHO05D004925 1.1e-31 140.6 141 53.9
CDE04G2232 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 1.4e-31 140.2 129 56.6
PSO135G0880 Papaver somniferum HOM05D003990 ORTHO05D004925 4.2e-31 138.7 141 53.9
Medtr1g031790 Medicago truncatula HOM05D003990 ORTHO05D004925 5.4e-31 138.3 133 56.4
Psat6g044760 Pisum sativum HOM05D003990 ORTHO05D004925 3.5e-30 135.6 121 57.0
TPR.G36963 Trifolium pratense HOM05D003990 ORTHO05D004925 3.5e-30 135.6 134 54.5
Ca_12579_v3 Cicer arietinum L. HOM05D003990 ORTHO05D004925 6.0e-30 134.8 134 53.0
MBI12_g30966_MAGBIO Magnolia biondii HOM05D003990 ORTHO05D004925 3.0e-29 132.5 122 57.4
unitig_52.g17196 Utricularia gibba HOM05D003990 ORTHO05D004925 3.0e-29 132.5 113 62.8
Haze_09152 Corylus avellana HOM05D003990 ORTHO05D004925 6.6e-29 131.3 119 55.5
FvH4_5g11021 Fragaria vesca HOM05D003990 ORTHO05D004925 1.1e-28 130.6 105 57.1
VMungo1215G2928 Vigna mungo HOM05D003990 ORTHO05D004925 1.9e-28 129.8 126 53.2
Cfa011937 Carpinus fangiana HOM05D003990 ORTHO05D004925 2.5e-28 129.4 122 55.7
CiPaw.11G113600 Carya illinoinensis HOM05D003990 ORTHO05D004925 2.5e-28 129.4 119 58.0
THA.LOC104815209 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 2.5e-28 129.4 115 53.9
Aa31LG6G7280 Aethionema arabicum HOM05D003990 ORTHO05D004925 3.3e-28 129.0 113 54.9
QL02p029171 Quercus lobata HOM05D003990 ORTHO05D004925 3.3e-28 129.0 115 53.9
Lj2g0026928 Lotus japonicus HOM05D003990 ORTHO05D004925 4.3e-28 128.6 142 47.9
Sed0016376 Sechium edule HOM05D003990 ORTHO05D004925 4.3e-28 128.6 128 53.9
MELO3C013779.2 Cucumis melo HOM05D003990 ORTHO05D004925 9.6e-28 127.5 138 49.3
Phvul.003G021600 Phaseolus vulgaris HOM05D003990 ORTHO05D004925 9.6e-28 127.5 132 53.8
Thhalv10026820m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 1.3e-27 127.1 113 53.1
BraA01t01479Z Brassica rapa HOM05D003990 ORTHO05D004925 1.6e-27 126.7 117 53.0
BolC1t01856H Brassica oleracea HOM05D003990 ORTHO05D004925 2.8e-27 125.9 117 53.0
CARHR006280 Cardamine hirsuta HOM05D003990 ORTHO05D004925 2.8e-27 125.9 113 53.1
HPP92_008886 Vanilla planifolia HOM05D003990 ORTHO05D004925 2.8e-27 125.9 143 51.0
BcaC09g50914 Brassica carinata HOM05D003990 ORTHO05D004925 3.6e-27 125.6 117 53.0
BcaC09g50915 Brassica carinata HOM05D003990 ORTHO05D004925 4.8e-27 125.2 114 50.9
ATR0620G013 Amborella trichopoda HOM05D003990 ORTHO05D004925 8.1e-27 124.4 132 53.8
AL7G29210 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 8.1e-27 124.4 113 50.4
AT4G24080 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 8.1e-27 124.4 113 50.4
A01p15340 Brassica napus HOM05D003990 ORTHO05D004925 8.1e-27 124.4 113 51.3
C01p19300 Brassica napus HOM05D003990 ORTHO05D004925 8.1e-27 124.4 117 53.0
BolC1t01855H Brassica oleracea HOM05D003990 ORTHO05D004925 8.1e-27 124.4 113 51.3
BraA01t01478Z Brassica rapa HOM05D003990 ORTHO05D004925 8.1e-27 124.4 113 51.3
CsaV3_3G000920 Cucumis sativus L. HOM05D003990 ORTHO05D004925 8.1e-27 124.4 138 47.8
Sc01g0010580 Simmondsia chinensis HOM05D003990 ORTHO05D004925 8.1e-27 124.4 114 55.3
AUR62007042 Chenopodium quinoa HOM05D003990 ORTHO05D004925 1.1e-26 124.0 114 52.6
CDE07G1159 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 1.4e-26 123.6 126 50.8
A01p15350 Brassica napus HOM05D003990 ORTHO05D004925 1.8e-26 123.2 117 52.1
CARHR231480 Cardamine hirsuta HOM05D003990 ORTHO05D004925 2.4e-26 122.9 113 51.3
Carub.0007s1702 Capsella rubella HOM05D003990 ORTHO05D004925 3.1e-26 122.5 115 49.6
Nn1g00366 Nelumbo nucifera HOM05D003990 ORTHO05D004925 3.1e-26 122.5 135 54.1
QL02p029158 Quercus lobata HOM05D003990 ORTHO05D004925 3.1e-26 122.5 116 53.4
C01p19290 Brassica napus HOM05D003990 ORTHO05D004925 4.0e-26 122.1 113 50.4
Duzib084G0313 Durio zibethinus HOM05D003990 ORTHO05D004925 5.3e-26 121.7 113 53.1
BcaNung01112 Brassica carinata HOM05D003990 ORTHO05D004925 6.9e-26 121.3 113 52.2
Oeu022040.1 Olea europaea HOM05D003990 ORTHO05D004925 6.9e-26 121.3 118 50.8
Zm00001eb103220 Zea mays HOM05D003990 ORTHO05D004925 1.5e-25 120.2 139 48.2
EL10Ac5g12452 Beta vulgaris HOM05D003990 ORTHO05D004925 2.6e-25 119.4 116 49.1
Os09g0529900 Oryza sativa ssp. japonica HOM05D003990 ORTHO05D004925 2.6e-25 119.4 129 51.2
AUR62019906 Chenopodium quinoa HOM05D003990 ORTHO05D004925 5.8e-25 118.2 114 50.0
SEGI_30656 Sequoiadendron giganteum HOM05D003990 ORTHO05D004925 3.8e-24 115.5 123 52.0
Ah.12g053130 Amaranthus hybridus HOM05D003990 ORTHO05D004925 6.4e-24 114.8 116 47.4
QL02p029191 Quercus lobata HOM05D003990 ORTHO05D004925 1.4e-23 113.6 110 51.8
Thhalv10027122m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 5.4e-23 111.7 114 48.2
arahy.Tifrunner.gnm1.ann1.LQZ0GD Arachis hypogaea HOM05D003990 ORTHO05D004925 9.3e-23 110.9 116 49.1
arahy.Tifrunner.gnm1.ann1.ZCAA4H Arachis hypogaea HOM05D003990 ORTHO05D004925 9.3e-23 110.9 116 49.1
CARHR006270 Cardamine hirsuta HOM05D003990 ORTHO05D004925 1.6e-22 110.2 112 50.0
COL.COLO4_10784 Corchorus olitorius HOM05D003990 ORTHO05D004925 1.6e-22 110.2 113 48.7
Thhalv10027505m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 2.3e-21 106.3 111 45.0
Potri.001G084900 Populus trichocarpa HOM05D003990 ORTHO05D004925 1.9e-20 103.2 89 59.6
Pp3c17_4700 Physcomitrium patens HOM05D003990 ORTHO05D004925 6.2e-19 98.2 111 50.5
AagrBONN_evm.TU.Sc2ySwM_117.985 Anthoceros agrestis HOM05D003990 ORTHO05D004925 6.9e-18 94.7 111 45.9
arahy.Tifrunner.gnm1.ann1.3SR05H Arachis hypogaea HOM05D003990 ORTHO05D004925 1.2e-17 94.0 116 43.1
arahy.Tifrunner.gnm1.ann1.UPJ447 Arachis hypogaea HOM05D003990 ORTHO05D004925 1.2e-17 94.0 116 43.1
arahy.Tifrunner.gnm1.ann1.IT3SMZ Arachis hypogaea HOM05D003990 ORTHO05D004925 1.3e-16 90.5 116 41.4
arahy.Tifrunner.gnm1.ann1.Y0R09G Arachis hypogaea HOM05D003990 ORTHO05D004925 1.3e-16 90.5 116 41.4
vmacro11510 Vaccinium macrocarpon HOM05D003990 ORTHO05D004925 1.3e-16 90.5 102 47.1
Duzib068G0872 Durio zibethinus HOM05D003990 ORTHO05D004925 2.2e-16 89.7 88 52.3
Mapoly0141s0022 Marchantia polymorpha HOM05D003990 ORTHO05D004925 6.4e-16 88.2 113 44.2
arahy.Tifrunner.gnm1.ann1.E0UK9T Arachis hypogaea HOM05D003990 ORTHO05D004925 1.1e-15 87.4 114 43.0
arahy.Tifrunner.gnm1.ann1.VJUY72 Arachis hypogaea HOM05D003990 ORTHO05D004925 1.4e-15 87.0 114 43.0
Sc16g0011220 Simmondsia chinensis HOM05D003990 ORTHO05D004925 4.6e-14 82.0 93 47.3
COL.COLO4_10783 Corchorus olitorius HOM05D003990 ORTHO05D004925 6.0e-14 81.6 88 47.7
Migut.E00635 Erythranthe guttata HOM05D003990 ORTHO05D004925 8.7e-13 77.8 81 51.9
Hma1.2p1_0212F.1_g090250 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 2.8e-11 72.8 59 57.6
EL10Ac6g14266 Beta vulgaris HOM05D003990 ORTHO05D004925 3.7e-11 72.4 60 63.3
AT4G24070 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 2.4e-10 69.7 60 51.7
Zm00001eb314200 Zea mays HOM05D003990 ORTHO05D004925 6.9e-10 68.2 62 53.2
arahy.Tifrunner.gnm1.ann1.QV8INP Arachis hypogaea HOM05D003990 ORTHO05D004925 1.3e-08 63.9 113 35.4
arahy.Tifrunner.gnm1.ann1.UE00R2 Arachis hypogaea HOM05D003990 ORTHO05D004925 2.9e-08 62.8 118 33.9
QL02p029160 Quercus lobata HOM05D003990 ORTHO05D004925 1.1e-07 60.8 65 52.3
Zm00001eb207470 Zea mays HOM05D003990 ORTHO05D004925 2.5e-07 59.7 84 42.9


User provided reference genes

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