Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G479.1 Capsicum annuum HOM05D008195 ORTHO05D010950 1.7e-143 512.7 259 100.0
CAN.G1228.30 Capsicum annuum HOM05D008195 ORTHO05D010950 7.3e-91 337.8 250 75.2
CAN.G479.2 Capsicum annuum HOM05D008195 ORTHO05D010950 2.4e-81 306.2 259 66.8
PGSC0003DMG400024640 Solanum tuberosum HOM05D008195 ORTHO05D000743 2.3e-76 289.7 289 56.4
Solyc03g115160.3 Solanum lycopersicum HOM05D008195 ORTHO05D000743 4.3e-67 258.8 289 52.6
Sopen03g034220 Solanum pennellii HOM05D008195 ORTHO05D000743 2.1e-66 256.5 289 52.2
Nitab4.5_0007689g0050 Nicotiana tabacum HOM05D008195 ORTHO05D000743 1.3e-60 237.3 287 48.8
Nitab4.5_0001485g0150 Nicotiana tabacum HOM05D008195 ORTHO05D000743 2.8e-58 229.6 305 46.6
Peaxi162Scf00201g00235 Petunia axillaris HOM05D008195 ORTHO05D000743 1.1e-57 227.6 291 46.0
CAN.G111.39 Capsicum annuum HOM05D008195 ORTHO05D000743 6.9e-57 224.9 283 49.1
Solyc03g115180.3 Solanum lycopersicum HOM05D008195 ORTHO05D000743 2.0e-51 206.8 290 44.5
PGSC0003DMG401020463 Solanum tuberosum HOM05D008195 ORTHO05D010950 2.8e-50 203.0 256 50.8
PGSC0003DMG400020472 Solanum tuberosum HOM05D008195 ORTHO05D000743 5.0e-47 192.2 280 42.1
PGSC0003DMG400041231 Solanum tuberosum HOM05D008195 ORTHO05D010950 5.7e-43 178.7 243 46.5
Solyc06g066200.2 Solanum lycopersicum HOM05D008195 ORTHO05D000743 9.7e-43 177.9 274 43.4
Sopen06g021820 Solanum pennellii HOM05D008195 ORTHO05D000743 1.3e-42 177.6 274 43.1
Solyc06g066140.3 Solanum lycopersicum HOM05D008195 ORTHO05D000743 2.8e-42 176.4 265 41.1
PGSC0003DMG400023177 Solanum tuberosum HOM05D008195 ORTHO05D010950 8.5e-39 164.9 214 50.0
Sopen03g034240 Solanum pennellii HOM05D008195 ORTHO05D000743 1.9e-38 163.7 267 41.6
CAN.G479.4 Capsicum annuum HOM05D008195 ORTHO05D000743 2.5e-38 163.3 95 88.4
PGSC0003DMG400035870 Solanum tuberosum HOM05D008195 ORTHO05D010950 5.5e-38 162.2 272 40.1
PGSC0003DMG400040653 Solanum tuberosum HOM05D008195 ORTHO05D010950 6.7e-36 155.2 165 55.2
PGSC0003DMG400026134 Solanum tuberosum HOM05D008195 ORTHO05D000743 2.0e-35 153.7 254 42.5
Sopen06g024520 Solanum pennellii HOM05D008195 ORTHO05D010950 1.1e-33 147.9 230 42.6
Sopen06g024610 Solanum pennellii HOM05D008195 ORTHO05D000743 3.0e-28 129.8 173 44.5
PGSC0003DMG400016768 Solanum tuberosum HOM05D008195 ORTHO05D010950 2.8e-26 123.2 219 41.1
Dinv17406 Davidia involucrata HOM05D001093 ORTHO05D000743 2.6e-19 100.1 285 28.8
Sopen06g021660 Solanum pennellii HOM05D000006 ORTHO05D000001 3.4e-19 99.8 153 38.6
PGSC0003DMG400037001 Solanum tuberosum HOM05D008195 ORTHO05D000743 3.7e-18 96.3 148 42.6
CAN.G675.32 Capsicum annuum HOM05D008195 ORTHO05D010950 7.0e-17 92.0 119 47.9
Solyc06g066360.3 Solanum lycopersicum HOM05D008195 ORTHO05D000743 2.9e-15 86.7 137 38.0
Rhsim12G0151100 Rhododendron simsii HOM05D001093 ORTHO05D000743 5.0e-15 85.9 134 34.3
Solyc01g010500.3 Solanum lycopersicum HOM05D001818 ORTHO05D001780 8.6e-15 85.1 115 42.6
Sopen06g024280 Solanum pennellii HOM05D008195 ORTHO05D000743 1.9e-14 84.0 64 62.5
CSS0005519 Camellia sinensis var. sinensis HOM05D001093 ORTHO05D000743 4.2e-14 82.8 270 27.4
Dinv22785 Davidia involucrata HOM05D001093 ORTHO05D000743 7.2e-14 82.0 226 27.9
PGSC0003DMG400040403 Solanum tuberosum HOM05D008195 ORTHO05D010950 7.2e-14 82.0 80 53.8
SGA_v2.0_scaffold313G48311 Striga asiatica HOM05D001093 ORTHO05D000743 1.2e-13 81.3 89 44.9
Actinidia16122 Actinidia chinensis HOM05D001093 ORTHO05D000743 4.7e-13 79.3 126 36.5
Rhsim08G0146400 Rhododendron simsii HOM05D001093 ORTHO05D000743 1.0e-12 78.2 127 32.3
vmacro17606 Vaccinium macrocarpon HOM05D001093 ORTHO05D000743 1.0e-12 78.2 90 37.8
Migut.I00329 Erythranthe guttata HOM05D001093 ORTHO05D000743 4.0e-12 76.3 295 26.1
Oeu047262.2 Olea europaea HOM05D001093 ORTHO05D000743 8.9e-12 75.1 110 40.9
Cc00_g03840 Coffea canephora HOM05D001093 ORTHO05D000743 1.2e-11 74.7 103 38.8
vmacro16499 Vaccinium macrocarpon HOM05D001093 ORTHO05D000743 1.2e-11 74.7 127 32.3
Lj5A103G64 Lonicera japonica HOM05D001093 ORTHO05D000743 2.0e-11 73.9 356 24.7
MSTRG.22985 Avicennia marina HOM05D001093 ORTHO05D000743 2.8e-10 70.1 89 39.3
Hund02591 Selenicereus undatus HOM05D001093 ORTHO05D000743 6.3e-10 68.9 110 38.2
QL03p072663 Quercus lobata HOM05D001093 ORTHO05D000743 8.3e-10 68.6 265 26.8
QL03p072752 Quercus lobata HOM05D001093 ORTHO05D000743 8.3e-10 68.6 264 27.7
arahy.Tifrunner.gnm1.ann1.7R0RVH Arachis hypogaea HOM05D001093 ORTHO05D000743 1.4e-09 67.8 286 24.1
CAN.G479.9 Capsicum annuum HOM05D008195 ORTHO05D010950 1.8e-09 67.4 46 63.0
Cfa019304 Carpinus fangiana HOM05D001093 ORTHO05D000743 4.1e-09 66.2 249 26.9
TAR629G2812 Trochodendron aralioides HOM05D001093 ORTHO05D000743 1.2e-08 64.7 92 37.0
HPP92_020444 Vanilla planifolia HOM05D001093 ORTHO05D000743 1.6e-08 64.3 85 34.1
Manes.06G085200 Manihot esculenta HOM05D007909 ORTHO05D010605 2.0e-08 63.9 87 37.9
EL10Ac5g11122 Beta vulgaris HOM05D001093 ORTHO05D000743 3.5e-08 63.2 153 29.4
SalBow5G5623 Salvia bowleyana HOM05D001093 ORTHO05D000743 3.5e-08 63.2 121 31.4
TAR629G0348 Trochodendron aralioides HOM05D001391 ORTHO05D000743 1.3e-07 61.2 92 35.9
CAN.G479.11 Capsicum annuum HOM05D008195 ORTHO05D010950 1.7e-07 60.8 73 49.3
MD06G1202200 Malus domestica HOM05D007909 ORTHO05D000743 1.7e-07 60.8 178 27.5
unitig_749.g13437 Utricularia gibba HOM05D008195 ORTHO05D000743 2.9e-07 60.1 222 28.8
Actinidia35035 Actinidia chinensis HOM05D001093 ORTHO05D000743 3.9e-07 59.7 127 29.1
arahy.Tifrunner.gnm1.ann1.ER6SHV Arachis hypogaea HOM05D008195 ORTHO05D000743 3.9e-07 59.7 95 34.7
Haze_07687 Corylus avellana HOM05D007909 ORTHO05D000743 3.9e-07 59.7 203 25.6
CAN.G479.3 Capsicum annuum HOM05D008195 ORTHO05D010950 6.6e-07 58.9 47 59.6
Thecc.02G330700 Theobroma cacao HOM05D001093 ORTHO05D000743 6.6e-07 58.9 85 34.1
MD14G1211300 Malus domestica HOM05D007909 ORTHO05D000743 8.6e-07 58.5 91 36.3
CiPaw.12G008400 Carya illinoinensis HOM05D007909 ORTHO05D000743 1.1e-06 58.2 91 35.2
Manes.14G085201 Manihot esculenta HOM05D001093 ORTHO05D000743 1.1e-06 58.2 81 38.3
Sc12g0006650 Simmondsia chinensis HOM05D001093 ORTHO05D000743 2.5e-06 57.0 108 34.3
AT1G43770 Arabidopsis thaliana HOM05D001093 ORTHO05D000743 3.3e-06 56.6 86 34.9
SEGI_01537 Sequoiadendron giganteum HOM05D001093 ORTHO05D000743 3.3e-06 56.6 96 34.4
BcaB07g33670 Brassica carinata HOM05D001093 ORTHO05D000743 5.6e-06 55.8 199 29.1
AL1G51860 Arabidopsis lyrata HOM05D001093 ORTHO05D000743 7.3e-06 55.5 86 34.9
DCAR_007194 Daucus carota HOM05D001093 ORTHO05D000743 9.5e-06 55.1 86 32.6


User provided reference genes

Program Settings