Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G478.5 Capsicum annuum HOM05D006031 ORTHO05D007417 2.9e-117 425.2 214 100.0
Solyc12g006030.2 Solanum lycopersicum HOM05D006031 ORTHO05D007417 4.2e-108 394.8 214 93.0
Sopen12g002000 Solanum pennellii HOM05D006031 ORTHO05D007417 7.1e-108 394.0 214 92.5
Nitab4.5_0000952g0030 Nicotiana tabacum HOM05D006031 ORTHO05D007417 3.7e-104 381.7 214 89.3
Nitab4.5_0000010g0020 Nicotiana tabacum HOM05D006031 ORTHO05D007417 1.8e-103 379.4 214 88.8
Peaxi162Scf00539g00717 Petunia axillaris HOM05D006031 ORTHO05D007417 1.2e-99 366.7 214 85.5
PSO566G0179 Papaver somniferum HOM05D006031 ORTHO05D007417 5.7e-97 357.8 211 81.5
Atru.chr7.1388 Acer truncatum HOM05D006031 ORTHO05D007417 7.4e-97 357.5 214 80.4
Migut.K00493 Erythranthe guttata HOM05D006031 ORTHO05D007417 3.7e-96 355.1 211 81.0
Actinidia20400 Actinidia chinensis HOM05D006031 ORTHO05D007417 1.4e-95 353.2 206 82.0
PSO782G0755 Papaver somniferum HOM05D006031 ORTHO05D007417 1.8e-95 352.8 211 79.6
Thecc.09G105700 Theobroma cacao HOM05D006031 ORTHO05D007417 1.8e-95 352.8 214 78.5
Cc06_g10050 Coffea canephora HOM05D006031 ORTHO05D007417 2.4e-95 352.4 209 81.3
Dinv41637 Davidia involucrata HOM05D006031 ORTHO05D007417 4.1e-95 351.7 207 81.6
Hma1.2p1_0945F.1_g240050 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 4.1e-95 351.7 209 80.9
Lsat_1_v5_gn_4_6541 Lactuca sativa HOM05D006031 ORTHO05D007417 4.1e-95 351.7 212 81.1
COL.COLO4_34809 Corchorus olitorius HOM05D006031 ORTHO05D007417 5.3e-95 351.3 208 79.3
RcHm_v2.0_Chr2g0091271 Rosa chinensis HOM05D006031 ORTHO05D007417 3.4e-94 348.6 209 79.4
TPR.G34905 Trifolium pratense HOM05D006031 ORTHO05D007417 1.3e-93 346.7 214 79.4
GSVIVG01015348001 Vitis vinifera HOM05D006031 ORTHO05D007417 1.3e-93 346.7 207 79.7
CANSAT56G1289 Cannabis sativa HOM05D006031 ORTHO05D007417 1.7e-93 346.3 206 79.1
Gorai.010G073700 Gossypium raimondii HOM05D006031 ORTHO05D007417 1.7e-93 346.3 209 78.0
MD02G1057400 Malus domestica HOM05D006031 ORTHO05D007417 1.7e-93 346.3 206 80.6
QL02p044744 Quercus lobata HOM05D006031 ORTHO05D007417 1.7e-93 346.3 209 78.9
HanXRQChr17g0570151 Helianthus annuus HOM05D006031 ORTHO05D007417 2.9e-93 345.5 210 80.0
Manes.03G024000 Manihot esculenta HOM05D006031 ORTHO05D007417 2.9e-93 345.5 214 78.0
TWI63G0954 Tripterygium wilfordii HOM05D006031 ORTHO05D007417 2.9e-93 345.5 209 78.5
AUR62021455 Chenopodium quinoa HOM05D006031 ORTHO05D007417 3.8e-93 345.1 205 81.0
FvH4_1g05640 Fragaria vesca HOM05D006031 ORTHO05D007417 5.0e-93 344.7 209 79.9
Gohir.A06G064600 Gossypium hirsutum HOM05D006031 ORTHO05D007417 6.5e-93 344.4 209 77.5
FAN23G2797 Fragaria x ananassa HOM05D006031 ORTHO05D007417 1.1e-92 343.6 209 79.9
TAR624G0502 Trochodendron aralioides HOM05D006031 ORTHO05D007417 1.4e-92 343.2 205 80.0
CiPaw.03G228000 Carya illinoinensis HOM05D006031 ORTHO05D007417 1.9e-92 342.8 209 78.0
Ca_25548_v3 Cicer arietinum L. HOM05D006031 ORTHO05D007417 1.9e-92 342.8 214 78.5
Gohir.D06G063200 Gossypium hirsutum HOM05D006031 ORTHO05D007417 3.2e-92 342.0 209 77.0
Ciclev10009448m.g Citrus clementina HOM05D006031 ORTHO05D007417 5.5e-92 341.3 218 77.1
Medtr1g035260 Medicago truncatula HOM05D006031 ORTHO05D007417 5.5e-92 341.3 214 78.0
Sabra18G0072100 Salix brachista HOM05D006031 ORTHO05D007417 5.5e-92 341.3 209 77.5
MELO3C004569.2 Cucumis melo HOM05D006031 ORTHO05D007417 9.3e-92 340.5 214 75.7
PGR102G2811 Punica granatum HOM05D006031 ORTHO05D007417 9.3e-92 340.5 209 78.0
FAN26G3395 Fragaria x ananassa HOM05D006031 ORTHO05D007417 1.6e-91 339.7 209 78.9
Aqoxy7G01527 Aquilegia oxysepala HOM05D006031 ORTHO05D007417 2.7e-91 339.0 210 77.1
FAN26G0948 Fragaria x ananassa HOM05D006031 ORTHO05D007417 2.7e-91 339.0 209 78.9
Glyma.01G145300 Glycine max HOM05D006031 ORTHO05D007417 2.7e-91 339.0 210 76.7
Lalb_Chr22g0352651 Lupinus albus HOM05D006031 ORTHO05D007417 2.7e-91 339.0 209 76.6
Eucgr.C03802 Eucalyptus grandis HOM05D006031 ORTHO05D007417 3.5e-91 338.6 206 77.7
CsaV3_2G002120 Cucumis sativus L. HOM05D006031 ORTHO05D007417 6.1e-91 337.8 214 75.2
Cpa.g.sc12.30 Carica papaya HOM05D006031 ORTHO05D007417 1.0e-90 337.0 207 77.8
Hund26230 Selenicereus undatus HOM05D006031 ORTHO05D007417 1.8e-90 336.3 205 78.5
EL10Ac8g18430 Beta vulgaris HOM05D006031 ORTHO05D007417 2.3e-90 335.9 207 76.8
arahy.Tifrunner.gnm1.ann1.4UU729 Arachis hypogaea HOM05D006031 ORTHO05D007417 3.9e-90 335.1 209 76.1
Potri.018G083800 Populus trichocarpa HOM05D006031 ORTHO05D007417 5.1e-90 334.7 209 76.6
VMungo0464G0135 Vigna mungo HOM05D006031 ORTHO05D007417 8.7e-90 334.0 211 76.3
arahy.Tifrunner.gnm1.ann1.P4D2XC Arachis hypogaea HOM05D006031 ORTHO05D007417 1.1e-89 333.6 209 75.6
ECA234G3380 Erigeron canadensis HOM05D006031 ORTHO05D007417 1.1e-89 333.6 205 79.5
SalBow3G0984 Salvia bowleyana HOM05D006031 ORTHO05D007417 1.1e-89 333.6 219 74.9
Nn2g11655 Nelumbo nucifera HOM05D006031 ORTHO05D007417 2.5e-89 332.4 205 78.0
BcaC09g51657 Brassica carinata HOM05D006031 ORTHO05D007417 3.3e-89 332.0 207 77.3
C01p10630 Brassica napus HOM05D006031 ORTHO05D007417 3.3e-89 332.0 207 77.3
BolC1t01025H Brassica oleracea HOM05D006031 ORTHO05D007417 3.3e-89 332.0 207 77.3
ClCG11G002340 Citrullus lanatus HOM05D006031 ORTHO05D007417 3.3e-89 332.0 235 69.4
MBI04_g14932_MAGBIO Magnolia biondii HOM05D006031 ORTHO05D007417 7.4e-89 330.9 205 76.1
A01p09080 Brassica napus HOM05D006031 ORTHO05D007417 9.7e-89 330.5 207 76.8
BolC7t46125H Brassica oleracea HOM05D006031 ORTHO05D007417 1.3e-88 330.1 207 75.8
THA.LOC104804018 Tarenaya hassleriana HOM05D006031 ORTHO05D007417 1.3e-88 330.1 205 78.0
BraA01t00856Z Brassica rapa HOM05D006031 ORTHO05D007417 2.2e-88 329.3 207 76.3
CSS0004856 Camellia sinensis var. sinensis HOM05D006031 ORTHO05D007417 2.2e-88 329.3 215 75.8
AUR62010942 Chenopodium quinoa HOM05D006031 ORTHO05D007417 2.2e-88 329.3 205 78.5
C07p56460 Brassica napus HOM05D006031 ORTHO05D007417 3.7e-88 328.6 207 75.4
Phvul.004G168000 Phaseolus vulgaris HOM05D006031 ORTHO05D007417 3.7e-88 328.6 209 76.1
Sp7g26830 Schrenkiella parvula HOM05D006031 ORTHO05D007417 3.7e-88 328.6 207 75.4
Actinidia09434 Actinidia chinensis HOM05D006031 ORTHO05D007417 4.8e-88 328.2 209 77.5
Carub.0007s1181 Capsella rubella HOM05D006031 ORTHO05D007417 6.3e-88 327.8 207 75.8
Sc18g0001360 Simmondsia chinensis HOM05D006031 ORTHO05D007417 8.2e-88 327.4 205 75.1
BcaNung01361 Brassica carinata HOM05D006031 ORTHO05D007417 1.1e-87 327.0 207 75.8
A03p58440 Brassica napus HOM05D006031 ORTHO05D007417 1.1e-87 327.0 207 74.4
AT4G28830 Arabidopsis thaliana HOM05D006031 ORTHO05D007417 1.4e-87 326.6 207 75.8
BraA03t14904Z Brassica rapa HOM05D006031 ORTHO05D007417 1.4e-87 326.6 207 74.4
Thhalv10026253m.g Eutrema salsugineum HOM05D006031 ORTHO05D007417 1.4e-87 326.6 206 76.2
BcaC06g32602 Brassica carinata HOM05D006031 ORTHO05D007417 5.3e-87 324.7 206 74.3
Aa31LG2G21560 Aethionema arabicum HOM05D006031 ORTHO05D007417 6.9e-87 324.3 206 74.3
AL7G23660 Arabidopsis lyrata HOM05D006031 ORTHO05D007417 1.2e-86 323.6 208 74.5
ATR0315G117 Amborella trichopoda HOM05D006031 ORTHO05D007417 7.7e-86 320.9 210 71.4
Os06g0162600 Oryza sativa ssp. japonica HOM05D006031 ORTHO05D007417 2.5e-84 315.8 212 71.2
vmacro10877 Vaccinium macrocarpon HOM05D006031 ORTHO05D007417 3.2e-84 315.5 209 74.6
CDE02G2180 Ceratophyllum demersum HOM05D006031 ORTHO05D007417 5.5e-84 314.7 215 70.2
Ah.09g230920 Amaranthus hybridus HOM05D006031 ORTHO05D007417 2.1e-83 312.8 186 78.0
HPP92_005270 Vanilla planifolia HOM05D006031 ORTHO05D007417 3.0e-82 308.9 210 71.0
Zm00001eb271370 Zea mays HOM05D006031 ORTHO05D007417 5.1e-82 308.1 212 71.2
Duzib150G0325 Durio zibethinus HOM05D006031 ORTHO05D007417 9.7e-81 303.9 213 69.5
SGA_v2.0_scaffold387G50523 Striga asiatica HOM05D006031 ORTHO05D007417 9.7e-81 303.9 214 68.2
unitig_62.g23476 Utricularia gibba HOM05D006031 ORTHO05D007417 1.3e-80 303.5 214 70.1
Mapoly0136s0020 Marchantia polymorpha HOM05D006031 ORTHO05D007417 2.2e-80 302.8 203 70.0
AagrBONN_evm.TU.Sc2ySwM_228.3645 Anthoceros agrestis HOM05D006031 ORTHO05D007417 3.4e-78 295.4 203 66.0
Cfa003225 Carpinus fangiana HOM05D006031 ORTHO05D007417 5.5e-76 288.1 209 69.4
Prupe.7G225500 Prunus persica HOM05D006031 ORTHO05D007417 1.6e-75 286.6 178 78.7
Pp3c6_12910 Physcomitrium patens HOM05D006031 ORTHO05D007417 3.6e-75 285.4 203 66.5
CARHR236620 Cardamine hirsuta HOM05D006031 ORTHO05D007417 3.9e-74 282.0 207 67.6
PGSC0003DMG400013889 Solanum tuberosum HOM05D000011 ORTHO05D007417 8.8e-74 280.8 198 74.2
ClCG06G015420 Citrullus lanatus HOM05D006031 ORTHO05D007417 3.3e-73 278.9 178 73.6
SMO304G0145 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 1.7e-72 276.6 203 66.0
SMO164G0018 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 1.1e-71 273.9 203 65.5
Hma1.2p1_0945F.1_g240060 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 1.8e-71 273.1 166 77.1
Dinv41633 Davidia involucrata HOM05D006031 ORTHO05D007417 2.0e-70 269.6 168 75.6
Haze_25783 Corylus avellana HOM05D006031 ORTHO05D007417 1.7e-69 266.5 190 68.9
Rhsim05G0043800 Rhododendron simsii HOM05D006031 ORTHO05D000070 1.8e-66 256.5 253 54.5
MSTRG.26365 Avicennia marina HOM05D006031 ORTHO05D007417 2.0e-65 253.1 157 80.3
Lj2g0026722 Lotus japonicus HOM05D006031 ORTHO05D007417 3.1e-63 245.7 157 75.2
Psat1g044640 Pisum sativum HOM05D006031 ORTHO05D007417 1.2e-62 243.8 157 75.8
Sed0012983 Sechium edule HOM05D006031 ORTHO05D007417 8.3e-56 221.1 141 73.0
Cre08.g384700 Chlamydomonas reinhardtii HOM05D006031 ORTHO05D007417 1.6e-51 206.8 211 48.3
CBR_g49195 Chara braunii HOM05D005459 ORTHO05D006751 2.0e-49 199.9 182 52.7
PRCOL_00003743 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 3.4e-49 199.1 215 46.5
arahy.Tifrunner.gnm1.ann1.PEIA6U Arachis hypogaea HOM05D006031 ORTHO05D007417 3.1e-47 192.6 156 62.8
Zm00001eb271350 Zea mays HOM05D006031 ORTHO05D007417 2.9e-45 186.0 130 70.0
Zm00001eb442390 Zea mays HOM05D006031 ORTHO05D007417 2.9e-45 186.0 130 70.0
DCAR_012059 Daucus carota HOM05D006031 ORTHO05D007417 8.6e-45 184.5 142 64.1
MCO05G480 Micromonas commoda HOM05D006031 ORTHO05D007417 1.4e-42 177.2 210 47.1
Lj4A429T15 Lonicera japonica HOM05D006031 ORTHO05D007417 6.6e-37 158.3 95 84.2
Haze_26211 Corylus avellana HOM05D006031 ORTHO05D007417 1.6e-35 153.7 233 38.2
Haze_27462 Corylus avellana HOM05D006031 ORTHO05D007417 1.6e-35 153.7 233 38.2
PRCOL_00005480 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 1.4e-23 114.0 196 35.2
Lsat_1_v5_gn_8_38160 Lactuca sativa HOM05D006031 ORTHO05D007417 1.3e-21 107.5 104 58.7
BcaC09g51665 Brassica carinata HOM05D006031 ORTHO05D007417 4.3e-20 102.4 88 59.1
SEGI_07643 Sequoiadendron giganteum HOM05D006031 ORTHO05D007417 3.1e-18 96.3 72 61.1
AUR62033208 Chenopodium quinoa HOM05D003603 ORTHO05D004186 4.4e-17 92.4 53 83.0
AUR62044225 Chenopodium quinoa HOM05D003603 ORTHO05D004186 4.4e-17 92.4 52 84.6
Zm00001eb271390 Zea mays HOM05D006031 ORTHO05D007417 1.9e-15 87.0 53 79.2
Glyma.09G193200 Glycine max HOM05D006031 ORTHO05D007417 6.0e-14 82.0 73 56.2
VMungo0464G0776 Vigna mungo HOM05D000002 ORTHO05D000001 3.3e-12 76.3 44 77.3
SEGI_21752 Sequoiadendron giganteum HOM05D006031 ORTHO05D007417 5.6e-12 75.5 57 61.4
PGSC0003DMG400015828 Solanum tuberosum HOM05D000124 ORTHO05D397188 2.4e-10 70.1 36 83.3
Lj4C429T0 Lonicera japonica HOM05D002180 ORTHO05D001339 3.1e-10 69.7 38 84.2
Medtr6g087210 Medicago truncatula HOM05D006031 ORTHO05D007417 9.9e-09 64.7 50 60.0
MBI06_g04307_MAGBIO Magnolia biondii HOM05D006031 ORTHO05D007417 3.8e-08 62.8 134 36.6
Thhalv10002738m.g Eutrema salsugineum HOM05D006031 ORTHO05D007417 1.4e-07 60.8 39 74.4
COL.COLO4_34793 Corchorus olitorius HOM05D006031 ORTHO05D007417 4.2e-07 59.3 33 78.8
Lsat_1_v5_gn_2_108580 Lactuca sativa HOM05D006031 ORTHO05D007417 2.1e-06 57.0 39 74.4


User provided reference genes

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