Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G473.74 Capsicum annuum HOM05D000494 ORTHO05D020297 2.9e-120 435.3 226 100.0
CAN.G459.20 Capsicum annuum HOM05D000494 ORTHO05D020297 2.0e-68 263.1 156 87.2
CAN.G637.52 Capsicum annuum HOM05D000494 ORTHO05D020297 3.2e-66 255.8 152 86.2
CAN.G135.80 Capsicum annuum HOM05D013712 ORTHO05D020297 1.9e-50 203.4 126 77.8
CAN.G1507.1 Capsicum annuum HOM05D001939 ORTHO05D020297 2.4e-29 133.3 85 77.6
CAN.G551.19 Capsicum annuum HOM05D000494 ORTHO05D000556 1.6e-25 120.6 64 85.9
Sopen12g005470 Solanum pennellii HOM05D000494 ORTHO05D000556 8.2e-22 108.2 57 86.0
PGSC0003DMG400007819 Solanum tuberosum HOM05D000494 ORTHO05D000556 1.8e-21 107.1 57 84.2
Nitab4.5_0001021g0140 Nicotiana tabacum HOM05D000494 ORTHO05D000556 1.6e-20 104.0 55 83.6
Nitab4.5_0007330g0040 Nicotiana tabacum HOM05D000494 ORTHO05D000556 2.0e-20 103.6 57 84.2
Nitab4.5_0001555g0080 Nicotiana tabacum HOM05D000494 ORTHO05D000556 2.7e-20 103.2 55 83.6
CAN.G518.25 Capsicum annuum HOM05D000494 ORTHO05D000556 5.9e-20 102.1 55 81.8
Peaxi162Scf00391g00217 Petunia axillaris HOM05D000494 ORTHO05D000556 2.9e-19 99.8 55 80.0
Peaxi162Scf00108g00224 Petunia axillaris HOM05D000494 ORTHO05D000556 1.5e-18 97.4 53 83.0
CSS0029646 Camellia sinensis var. sinensis HOM05D000494 ORTHO05D000556 3.2e-18 96.3 62 66.1
Nitab4.5_0001751g0070 Nicotiana tabacum HOM05D000494 ORTHO05D000556 4.2e-18 95.9 57 78.9
Sopen07g003270 Solanum pennellii HOM05D000494 ORTHO05D000556 2.1e-17 93.6 55 76.4
Hma1.2p1_0182F.1_g080400 Hydrangea macrophylla HOM05D000494 ORTHO05D000556 1.4e-16 90.9 57 66.7
PGSC0003DMG400030694 Solanum tuberosum HOM05D000494 ORTHO05D000556 1.8e-16 90.5 55 74.5
Solyc07g007220.3 Solanum lycopersicum HOM05D000494 ORTHO05D000556 2.3e-16 90.1 55 74.5
Migut.J01265 Erythranthe guttata HOM05D000494 ORTHO05D000556 1.5e-15 87.4 103 43.7
Oeu040794.4 Olea europaea HOM05D000494 ORTHO05D000556 1.5e-15 87.4 58 67.2
Rhsim01G0052100 Rhododendron simsii HOM05D000494 ORTHO05D000556 1.5e-15 87.4 55 65.5
Aqoxy7G03548 Aquilegia oxysepala HOM05D000494 ORTHO05D000556 4.4e-15 85.9 110 41.8
SalBow1G3862 Salvia bowleyana HOM05D000494 ORTHO05D000556 4.4e-15 85.9 56 66.1
Hma1.2p1_0949F.1_g240630 Hydrangea macrophylla HOM05D000494 ORTHO05D000556 9.8e-15 84.7 57 64.9
Sabra18G0097900 Salix brachista HOM05D000494 ORTHO05D000556 9.8e-15 84.7 55 67.3
Duzib187G0354 Durio zibethinus HOM05D000494 ORTHO05D000556 2.8e-14 83.2 56 64.3
MD15G1160600 Malus domestica HOM05D000494 ORTHO05D000556 3.7e-14 82.8 58 62.1
Gohir.A05G012000 Gossypium hirsutum HOM05D000494 ORTHO05D000556 4.8e-14 82.4 59 57.6
vmacro21888 Vaccinium macrocarpon HOM05D000494 ORTHO05D000556 4.8e-14 82.4 55 61.8
CSS0014127 Camellia sinensis var. sinensis HOM05D000494 ORTHO05D000556 8.3e-14 81.6 52 67.3
Thecc.09G140300 Theobroma cacao HOM05D000494 ORTHO05D000556 8.3e-14 81.6 55 65.5
MSTRG.6087 Avicennia marina HOM05D000494 ORTHO05D000556 1.8e-13 80.5 52 71.2
FAN26G2867 Fragaria x ananassa HOM05D000894 ORTHO05D002325 1.8e-13 80.5 58 62.1
Gohir.D05G013000 Gossypium hirsutum HOM05D000494 ORTHO05D000556 1.8e-13 80.5 59 55.9
Gorai.009G013000 Gossypium raimondii HOM05D000494 ORTHO05D000556 1.8e-13 80.5 59 55.9
MD02G1014300 Malus domestica HOM05D000494 ORTHO05D000556 1.8e-13 80.5 58 62.1
Potri.018G115100 Populus trichocarpa HOM05D000494 ORTHO05D000556 1.8e-13 80.5 55 63.6
TAR625G0723 Trochodendron aralioides HOM05D000494 ORTHO05D000556 1.8e-13 80.5 71 52.1
Sc18g0000080 Simmondsia chinensis HOM05D000494 ORTHO05D000556 3.1e-13 79.7 56 64.3
Os06g0179700 Oryza sativa ssp. japonica HOM05D000494 ORTHO05D000556 4.1e-13 79.3 61 54.1
Gohir.D06G050000 Gossypium hirsutum HOM05D000494 ORTHO05D000556 5.4e-13 79.0 56 60.7
Gorai.010G056900 Gossypium raimondii HOM05D000494 ORTHO05D000556 5.4e-13 79.0 56 60.7
Prupe.7G255800 Prunus persica HOM05D000494 ORTHO05D000556 5.4e-13 79.0 58 62.1
QL02p091129 Quercus lobata HOM05D000494 ORTHO05D000556 5.4e-13 79.0 55 65.5
Duzib150G1596 Durio zibethinus HOM05D000494 ORTHO05D000556 7.0e-13 78.6 56 62.5
Duzib168G0104 Durio zibethinus HOM05D000494 ORTHO05D000556 7.0e-13 78.6 51 68.6
FAN23G1845 Fragaria x ananassa HOM05D000894 ORTHO05D002325 7.0e-13 78.6 58 60.3
Lj7A450T51 Lonicera japonica HOM05D000494 ORTHO05D000556 7.0e-13 78.6 54 66.7
VMungo1215G1451 Vigna mungo HOM05D000494 ORTHO05D000556 7.0e-13 78.6 78 53.8
Glyma.17G105800 Glycine max HOM05D000494 ORTHO05D000556 9.1e-13 78.2 77 53.2
Potri.006G059600 Populus trichocarpa HOM05D000494 ORTHO05D000556 9.1e-13 78.2 55 61.8
RcHm_v2.0_Chr2g0086781 Rosa chinensis HOM05D000494 ORTHO05D000556 9.1e-13 78.2 58 60.3
Cpa.g.sc46.81 Carica papaya HOM05D000494 ORTHO05D000556 1.2e-12 77.8 55 61.8
Gohir.A06G050900 Gossypium hirsutum HOM05D000494 ORTHO05D000556 2.0e-12 77.0 56 58.9
Lj9C706G9 Lonicera japonica HOM05D000494 ORTHO05D000556 2.0e-12 77.0 56 62.5
Zm00001eb258010 Zea mays HOM05D000494 ORTHO05D000556 2.0e-12 77.0 55 58.2
COL.COLO4_24116 Corchorus olitorius HOM05D000494 ORTHO05D000556 2.7e-12 76.6 52 65.4
Cc06_g07500 Coffea canephora HOM05D000494 ORTHO05D000556 3.5e-12 76.3 52 65.4
DCAR_008872 Daucus carota HOM05D000494 ORTHO05D000556 3.5e-12 76.3 52 61.5
TWI34G1178 Tripterygium wilfordii HOM05D000494 ORTHO05D000556 3.5e-12 76.3 52 65.4
TAR636G0246 Trochodendron aralioides HOM05D001077 ORTHO05D001053 3.5e-12 76.3 58 56.9
ClCG02G017220 Citrullus lanatus HOM05D000494 ORTHO05D000556 4.5e-12 75.9 54 64.8
Haze_19328 Corylus avellana HOM05D000494 ORTHO05D020297 4.5e-12 75.9 68 54.4
Sed0014283 Sechium edule HOM05D000494 ORTHO05D000556 4.5e-12 75.9 54 64.8
FAN28G2574 Fragaria x ananassa HOM05D000494 ORTHO05D000556 5.9e-12 75.5 58 58.6
GSVIVG01012879001 Vitis vinifera HOM05D000494 ORTHO05D000556 5.9e-12 75.5 55 60.0
CSS0022559 Camellia sinensis var. sinensis HOM05D000494 ORTHO05D000556 7.7e-12 75.1 43 72.1
Cfa020902 Carpinus fangiana HOM05D000494 ORTHO05D000556 7.7e-12 75.1 65 56.9
FvH4_1g01790 Fragaria vesca HOM05D000494 ORTHO05D000556 7.7e-12 75.1 58 58.6
FAN19G1184 Fragaria x ananassa HOM05D000894 ORTHO05D002325 7.7e-12 75.1 58 58.6
Medtr4g116420 Medicago truncatula HOM05D000494 ORTHO05D000556 7.7e-12 75.1 57 64.9
Nn8g39687 Nelumbo nucifera HOM05D000494 ORTHO05D000556 7.7e-12 75.1 59 57.6
Psat4g032800 Pisum sativum HOM05D000494 ORTHO05D000556 7.7e-12 75.1 54 64.8
arahy.Tifrunner.gnm1.ann1.0UT8YS Arachis hypogaea HOM05D000494 ORTHO05D000556 1.0e-11 74.7 54 64.8
arahy.Tifrunner.gnm1.ann1.WG32WU Arachis hypogaea HOM05D000494 ORTHO05D000556 1.0e-11 74.7 54 64.8
TPR.G15787 Trifolium pratense HOM05D000494 ORTHO05D000556 1.0e-11 74.7 58 58.6
Glyma.13G165300 Glycine max HOM05D000494 ORTHO05D000556 1.3e-11 74.3 77 51.9
Sabra06G0042900 Salix brachista HOM05D000494 ORTHO05D000556 1.3e-11 74.3 55 56.4
Zm00001eb310150 Zea mays HOM05D002563 ORTHO05D020297 1.7e-11 73.9 55 56.4
MELO3C004439.2 Cucumis melo HOM05D000494 ORTHO05D000556 2.2e-11 73.6 54 63.0
CsaV3_2G003570 Cucumis sativus L. HOM05D000494 ORTHO05D000556 2.2e-11 73.6 54 63.0
Os02g0799000 Oryza sativa ssp. japonica HOM05D000494 ORTHO05D000556 2.2e-11 73.6 57 50.9
Phvul.003G174000 Phaseolus vulgaris HOM05D000494 ORTHO05D000556 2.2e-11 73.6 78 51.3
Atru.chr7.268 Acer truncatum HOM05D000494 ORTHO05D000556 2.9e-11 73.2 59 52.5
Ciclev10008623m.g Citrus clementina HOM05D000494 ORTHO05D000556 2.9e-11 73.2 57 57.9
Lj4g0018921 Lotus japonicus HOM05D000494 ORTHO05D000556 3.8e-11 72.8 55 60.0
Sed0019171 Sechium edule HOM05D000494 ORTHO05D000556 3.8e-11 72.8 54 63.0
Hund21604 Selenicereus undatus HOM05D000494 ORTHO05D000556 3.8e-11 72.8 89 43.8
AUR62041457 Chenopodium quinoa HOM05D000494 ORTHO05D000556 5.0e-11 72.4 53 64.2
ECA240G0902 Erigeron canadensis HOM05D000494 ORTHO05D000556 6.5e-11 72.0 57 56.1
Glyma.15G201300 Glycine max HOM05D000494 ORTHO05D000556 6.5e-11 72.0 55 60.0
Lalb_Chr08g0233651 Lupinus albus HOM05D000494 ORTHO05D000556 6.5e-11 72.0 55 61.8
MBI15_g25664_MAGBIO Magnolia biondii HOM05D000494 ORTHO05D000556 6.5e-11 72.0 59 50.8
AUR62011247 Chenopodium quinoa HOM05D000494 ORTHO05D000556 8.5e-11 71.6 53 64.2
Manes.14G137700 Manihot esculenta HOM05D000494 ORTHO05D000556 8.5e-11 71.6 55 54.5
PGR142G2940 Punica granatum HOM05D000494 ORTHO05D000556 8.5e-11 71.6 52 61.5
SGA_v2.0_scaffold45G17062 Striga asiatica HOM05D000494 ORTHO05D000556 8.5e-11 71.6 58 53.4
EL10Ac8g18808 Beta vulgaris HOM05D000494 ORTHO05D000556 1.1e-10 71.2 61 57.4
HanXRQChr09g0243021 Helianthus annuus HOM05D000494 ORTHO05D000556 1.1e-10 71.2 55 58.2
Lsat_1_v5_gn_7_46741 Lactuca sativa HOM05D000494 ORTHO05D000556 1.1e-10 71.2 57 57.9
HanXRQChr03g0063961 Helianthus annuus HOM05D000494 ORTHO05D000556 1.5e-10 70.9 65 50.8
CiPaw.15G183100 Carya illinoinensis HOM05D000494 ORTHO05D000556 1.9e-10 70.5 62 54.8
Lalb_Chr07g0179471 Lupinus albus HOM05D000494 ORTHO05D000556 3.2e-10 69.7 51 62.7
Lalb_Chr13g0301231 Lupinus albus HOM05D000494 ORTHO05D000556 3.2e-10 69.7 99 39.4
Manes.06G041800 Manihot esculenta HOM05D000494 ORTHO05D000556 3.2e-10 69.7 57 54.4
CANSAT11G1060 Cannabis sativa HOM05D000494 ORTHO05D000556 4.2e-10 69.3 55 60.0
unitig_0.g508 Utricularia gibba HOM05D000494 ORTHO05D000556 4.2e-10 69.3 55 50.9
ECA234G4039 Erigeron canadensis HOM05D000494 ORTHO05D000556 5.5e-10 68.9 57 54.4
Lj6g0018765 Lotus japonicus HOM05D000494 ORTHO05D000556 5.5e-10 68.9 51 64.7
PSO170G1179 Papaver somniferum HOM05D000494 ORTHO05D000556 5.5e-10 68.9 56 51.8
Lsat_1_v5_gn_5_94240 Lactuca sativa HOM05D000494 ORTHO05D000556 7.2e-10 68.6 102 36.3
Eucgr.C00442 Eucalyptus grandis HOM05D000494 ORTHO05D000556 2.1e-09 67.0 53 50.9
PSO017G2577 Papaver somniferum HOM05D000494 ORTHO05D000556 2.1e-09 67.0 56 50.0
Phvul.009G210100 Phaseolus vulgaris HOM05D000494 ORTHO05D000556 2.1e-09 67.0 54 59.3
Glyma.09G096600 Glycine max HOM05D000494 ORTHO05D000556 3.6e-09 66.2 55 56.4
Glyma.20G074333 Glycine max HOM05D000494 ORTHO05D000556 3.6e-09 66.2 55 56.4
VMungo1309G1502 Vigna mungo HOM05D000494 ORTHO05D000556 1.8e-08 63.9 54 55.6
Zm00001eb192230 Zea mays HOM05D000494 ORTHO05D000556 1.8e-08 63.9 36 69.4
CDE06G1996 Ceratophyllum demersum HOM05D000494 ORTHO05D000556 3.0e-08 63.2 36 69.4
Ah.09g223980 Amaranthus hybridus HOM05D000494 ORTHO05D000556 4.0e-08 62.8 56 51.8
CDE02G1354 Ceratophyllum demersum HOM05D000494 ORTHO05D000556 6.8e-08 62.0 81 39.5
Zm00001eb374920 Zea mays HOM05D000494 ORTHO05D000556 1.2e-07 61.2 63 42.9


User provided reference genes

Program Settings