Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G473.3 Capsicum annuum HOM05D003680 ORTHO05D004264 4.4e-181 637.9 329 100.0
Solyc02g086520.3 Solanum lycopersicum HOM05D003680 ORTHO05D004264 2.0e-117 426.4 330 70.9
Sopen02g031250 Solanum pennellii HOM05D003680 ORTHO05D004264 3.4e-117 425.6 332 70.5
PGSC0003DMG400012598 Solanum tuberosum HOM05D003680 ORTHO05D004264 1.8e-102 376.7 332 65.7
Nitab4.5_0006802g0060 Nicotiana tabacum HOM05D003680 ORTHO05D004264 1.7e-92 343.6 332 61.4
Nitab4.5_0002682g0050 Nicotiana tabacum HOM05D003680 ORTHO05D004264 3.8e-92 342.4 332 61.4
PGSC0003DMG400028065 Solanum tuberosum HOM05D003680 ORTHO05D004264 3.5e-82 309.3 334 56.3
Nitab4.5_0000419g0090 Nicotiana tabacum HOM05D003680 ORTHO05D004264 1.9e-75 287.0 332 55.4
Sopen12g014830 Solanum pennellii HOM05D003680 ORTHO05D004264 1.1e-72 277.7 317 53.3
Nitab4.5_0001890g0010 Nicotiana tabacum HOM05D003680 ORTHO05D004264 1.5e-72 277.3 332 53.6
Dinv35099 Davidia involucrata HOM05D003680 ORTHO05D004264 9.7e-72 274.6 274 57.7
Solyc12g035240.2 Solanum lycopersicum HOM05D003680 ORTHO05D004264 1.7e-71 273.9 315 54.6
Cc07_g01830 Coffea canephora HOM05D003680 ORTHO05D004264 1.9e-67 260.4 338 48.2
RcHm_v2.0_Chr2g0132111 Rosa chinensis HOM05D003680 ORTHO05D004264 7.2e-67 258.5 332 49.4
Cfa007382 Carpinus fangiana HOM05D003680 ORTHO05D004264 1.6e-66 257.3 334 48.8
Haze_14726 Corylus avellana HOM05D003680 ORTHO05D004264 2.7e-66 256.5 334 48.8
FAN02G4059 Fragaria x ananassa HOM05D003680 ORTHO05D004264 2.7e-66 256.5 331 47.7
Oeu054618.2 Olea europaea HOM05D003680 ORTHO05D004264 1.8e-65 253.8 360 48.3
Thecc.04G015600 Theobroma cacao HOM05D003680 ORTHO05D004264 5.1e-65 252.3 324 50.3
FvH4_4g26262 Fragaria vesca HOM05D003680 ORTHO05D004264 1.1e-62 244.6 331 45.9
FAN12G1559 Fragaria x ananassa HOM05D003680 ORTHO05D004264 2.4e-62 243.4 331 45.6
Gorai.012G063600 Gossypium raimondii HOM05D003680 ORTHO05D004264 3.1e-62 243.0 325 49.5
Gohir.D04G056700 Gossypium hirsutum HOM05D003680 ORTHO05D004264 2.0e-61 240.4 325 49.2
FAN12G0372 Fragaria x ananassa HOM05D003680 ORTHO05D004264 3.4e-61 239.6 331 45.3
FAN05G0183 Fragaria x ananassa HOM05D003680 ORTHO05D004264 5.9e-61 238.8 331 45.6
Duzib187G1135 Durio zibethinus HOM05D003655 ORTHO05D004065 1.7e-60 237.3 330 48.2
Prupe.3G290000 Prunus persica HOM05D003680 ORTHO05D004264 1.7e-60 237.3 331 45.9
Peaxi162Scf00129g01425 Petunia axillaris HOM05D003680 ORTHO05D004264 6.5e-60 235.3 296 51.7
TWI36G0939 Tripterygium wilfordii HOM05D003680 ORTHO05D004264 4.2e-59 232.6 325 46.2
Manes.15G166300 Manihot esculenta HOM05D003680 ORTHO05D004264 1.8e-57 227.3 352 45.5
TAR622G0154 Trochodendron aralioides HOM05D003680 ORTHO05D004264 5.2e-57 225.7 341 47.2
Duzib147G1439 Durio zibethinus HOM05D003680 ORTHO05D004264 2.0e-56 223.8 325 47.1
MSTRG.3151 Avicennia marina HOM05D003680 ORTHO05D004264 2.2e-55 220.3 355 44.2
MD17G1030000 Malus domestica HOM05D003680 ORTHO05D004264 1.1e-54 218.0 328 43.6
CiPaw.04G027800 Carya illinoinensis HOM05D003680 ORTHO05D004264 3.1e-54 216.5 335 45.7
MSTRG.3150 Avicennia marina HOM05D003680 ORTHO05D004264 5.9e-53 212.2 345 44.6
Medtr6g004930 Medicago truncatula HOM05D003680 ORTHO05D004264 1.0e-52 211.5 338 45.0
MD09G1028500 Malus domestica HOM05D003680 ORTHO05D004264 2.9e-52 209.9 331 42.3
Gohir.D11G070800 Gossypium hirsutum HOM05D003680 ORTHO05D004264 5.0e-52 209.1 361 42.9
Oeu057059.1 Olea europaea HOM05D003680 ORTHO05D004264 6.5e-52 208.8 295 48.1
Gohir.A11G066900 Gossypium hirsutum HOM05D003680 ORTHO05D004264 2.5e-51 206.8 359 42.9
Gorai.007G076000 Gossypium raimondii HOM05D003680 ORTHO05D004264 3.2e-51 206.5 359 42.6
CSS0043829 Camellia sinensis var. sinensis HOM05D003680 ORTHO05D004264 7.2e-51 205.3 343 42.9
CiPaw.03G042200 Carya illinoinensis HOM05D003680 ORTHO05D004264 2.1e-50 203.8 335 45.1
Migut.H00085 Erythranthe guttata HOM05D003680 ORTHO05D004264 2.1e-50 203.8 344 44.2
Aqoxy3G01124 Aquilegia oxysepala HOM05D003680 ORTHO05D004264 1.0e-49 201.4 341 42.5
DCAR_021716 Daucus carota HOM05D003680 ORTHO05D004264 1.4e-49 201.1 329 43.8
COL.COLO4_29093 Corchorus olitorius HOM05D003680 ORTHO05D004264 1.8e-49 200.7 267 47.9
arahy.Tifrunner.gnm1.ann1.YJRC23 Arachis hypogaea HOM05D003680 ORTHO05D004264 4.0e-49 199.5 347 42.1
Lj2g0009789 Lotus japonicus HOM05D003680 ORTHO05D004264 2.0e-48 197.2 350 42.9
Actinidia35765 Actinidia chinensis HOM05D003680 ORTHO05D004264 2.6e-48 196.8 326 43.9
Oeu006814.2 Olea europaea HOM05D003680 ORTHO05D004264 4.4e-48 196.1 324 43.2
PGR083G1310 Punica granatum HOM05D003680 ORTHO05D004264 5.7e-48 195.7 349 44.7
Ciclev10014743m.g Citrus clementina HOM05D003680 ORTHO05D004264 7.5e-48 195.3 345 41.7
Actinidia06002 Actinidia chinensis HOM05D003680 ORTHO05D004264 9.7e-48 194.9 332 44.0
SGA_v2.0_scaffold135G34898 Striga asiatica HOM05D003655 ORTHO05D004065 2.2e-47 193.7 337 46.3
arahy.Tifrunner.gnm1.ann1.WP4DQS Arachis hypogaea HOM05D003680 ORTHO05D004264 1.1e-46 191.4 347 41.2
Prupe.1G550900 Prunus persica HOM05D003680 ORTHO05D004264 1.4e-46 191.0 316 43.4
Ca_04157_v3 Cicer arietinum L. HOM05D003680 ORTHO05D004264 5.3e-46 189.1 340 42.6
FAN14G2184 Fragaria x ananassa HOM05D003680 ORTHO05D004264 4.5e-45 186.0 255 46.3
QL02p075129 Quercus lobata HOM05D003680 ORTHO05D004264 5.9e-45 185.7 179 59.2
ECA246G0141 Erigeron canadensis HOM05D003680 ORTHO05D004264 1.0e-44 184.9 294 46.6
Dinv33451 Davidia involucrata HOM05D003680 ORTHO05D004264 1.3e-44 184.5 326 42.3
Gohir.A05G357400 Gossypium hirsutum HOM05D003680 ORTHO05D004264 1.5e-43 181.0 324 42.6
Cpa.g.sc108.54 Carica papaya HOM05D003680 ORTHO05D004264 3.2e-43 179.9 328 40.5
CANSAT64G1511 Cannabis sativa HOM05D003680 ORTHO05D004264 1.2e-42 177.9 354 42.1
FvH4_6g28150 Fragaria vesca HOM05D003680 ORTHO05D004264 1.6e-42 177.6 333 38.4
CSS0037811 Camellia sinensis var. sinensis HOM05D003680 ORTHO05D004264 6.8e-41 172.2 314 42.7
Ah.06g187080 Amaranthus hybridus HOM05D003680 ORTHO05D004264 3.4e-40 169.9 340 40.3
AUR62043212 Chenopodium quinoa HOM05D003680 ORTHO05D004264 4.4e-40 169.5 340 41.5
Psat1g055600 Pisum sativum HOM05D003680 ORTHO05D004264 7.5e-40 168.7 179 56.4
Potri.001G348500 Populus trichocarpa HOM05D003680 ORTHO05D004264 9.8e-40 168.3 142 62.7
TPR.G14068 Trifolium pratense HOM05D003680 ORTHO05D004264 1.7e-39 167.5 183 56.3
Lalb_Chr06g0175821 Lupinus albus HOM05D003680 ORTHO05D004264 2.8e-39 166.8 349 41.0
MBI10_g00728_MAGBIO Magnolia biondii HOM05D003680 ORTHO05D004264 2.8e-39 166.8 361 42.7
TAR374G0695 Trochodendron aralioides HOM05D003680 ORTHO05D004264 8.3e-39 165.2 338 39.9
Glyma.19G004100 Glycine max HOM05D003680 ORTHO05D004264 5.4e-38 162.5 337 40.9
PSO017G2107 Papaver somniferum HOM05D003680 ORTHO05D004264 5.4e-38 162.5 348 40.8
VMungo0464G0243 Vigna mungo HOM05D003680 ORTHO05D004264 5.9e-37 159.1 195 51.8
CSS0042153 Camellia sinensis var. sinensis HOM05D003680 ORTHO05D004264 2.3e-36 157.1 358 36.9
HanXRQChr17g0548551 Helianthus annuus HOM05D003680 ORTHO05D004264 5.0e-36 156.0 311 42.4
Phvul.004G007500 Phaseolus vulgaris HOM05D003680 ORTHO05D004264 5.5e-35 152.5 270 41.1
vmacro18275 Vaccinium macrocarpon HOM05D003680 ORTHO05D004264 1.6e-34 151.0 186 50.5
PSO478G2404 Papaver somniferum HOM05D003680 ORTHO05D004264 1.0e-33 148.3 357 39.5
Glyma.05G004000 Glycine max HOM05D003680 ORTHO05D004264 2.3e-33 147.1 179 49.2
QL10p008427 Quercus lobata HOM05D003680 ORTHO05D004264 4.0e-33 146.4 340 37.4
Sc03g0007570 Simmondsia chinensis HOM05D003680 ORTHO05D004264 5.7e-32 142.5 192 49.0
THA.LOC104822398 Tarenaya hassleriana HOM05D003680 ORTHO05D004264 9.8e-32 141.7 327 39.8
Dinv38553 Davidia involucrata HOM05D003680 ORTHO05D004264 1.1e-30 138.3 342 37.7
Sabra16G0228100 Salix brachista HOM05D003680 ORTHO05D004264 4.1e-30 136.3 327 38.2
EL10Ac4g08567 Beta vulgaris HOM05D003680 ORTHO05D004264 1.2e-29 134.8 192 47.4
Actinidia19347 Actinidia chinensis HOM05D003680 ORTHO05D004264 1.6e-29 134.4 282 39.7
Sp3g00490 Schrenkiella parvula HOM05D003680 ORTHO05D004264 2.7e-29 133.7 202 46.0
Lj7A598G52 Lonicera japonica HOM05D003680 ORTHO05D004264 3.5e-29 133.3 152 53.9
Carub.0006s1272 Capsella rubella HOM05D003680 ORTHO05D004264 7.8e-29 132.1 162 50.0
Manes.15G166200 Manihot esculenta HOM05D003680 ORTHO05D004264 1.3e-28 131.3 338 36.7
Eucgr.J02234 Eucalyptus grandis HOM05D003680 ORTHO05D004264 2.3e-28 130.6 335 39.1
Rhsim08G0051500 Rhododendron simsii HOM05D003680 ORTHO05D000229 3.8e-28 129.8 199 46.7
Potri.T125008 Populus trichocarpa HOM05D003680 ORTHO05D004264 8.6e-28 128.6 340 36.2
MBI10_g00729_MAGBIO Magnolia biondii HOM05D003680 ORTHO05D004264 1.1e-27 128.3 347 38.3
ATR1158G006 Amborella trichopoda HOM05D003680 ORTHO05D004264 1.5e-27 127.9 181 50.8
Aa31LG11G15310 Aethionema arabicum HOM05D003680 ORTHO05D004264 1.9e-27 127.5 163 50.9
MD06G1169700 Malus domestica HOM05D003680 ORTHO05D004264 1.9e-27 127.5 290 35.2
Cfa019179 Carpinus fangiana HOM05D003680 ORTHO05D004264 3.3e-27 126.7 324 38.9
Prupe.5G168500 Prunus persica HOM05D003680 ORTHO05D004264 7.3e-27 125.6 329 34.3
CiPaw.12G029200 Carya illinoinensis HOM05D003680 ORTHO05D004264 1.6e-26 124.4 334 37.4
Thhalv10020517m.g Eutrema salsugineum HOM05D003680 ORTHO05D004264 6.1e-26 122.5 314 41.4
Hund02282 Selenicereus undatus HOM05D003680 ORTHO05D004264 1.0e-25 121.7 98 66.3
unitig_62.g23356 Utricularia gibba HOM05D001993 ORTHO05D004040 1.4e-25 121.3 347 34.6
Nitab4.5_0000145g0140 Nicotiana tabacum HOM05D003680 ORTHO05D004264 1.8e-25 120.9 200 44.5
Eucgr.I00119 Eucalyptus grandis HOM05D003680 ORTHO05D004264 2.3e-25 120.6 145 52.4
MD14G1175200 Malus domestica HOM05D003680 ORTHO05D004264 1.2e-24 118.2 339 33.3
RcHm_v2.0_Chr7g0192951 Rosa chinensis HOM05D003680 ORTHO05D004264 1.2e-24 118.2 304 35.9
CDE06G0754 Ceratophyllum demersum HOM05D003680 ORTHO05D000787 2.0e-24 117.5 206 44.2
AT5G14540 Arabidopsis thaliana HOM05D003680 ORTHO05D004264 2.6e-24 117.1 346 33.8
Zm00001eb336590 Zea mays HOM05D003680 ORTHO05D004264 4.4e-24 116.3 183 43.7
Haze_07557 Corylus avellana HOM05D003680 ORTHO05D004264 7.5e-24 115.5 327 37.0
Aa31LG5G10720 Aethionema arabicum HOM05D003680 ORTHO05D004264 1.3e-23 114.8 153 48.4
vmacro19321 Vaccinium macrocarpon HOM05D003680 ORTHO05D004264 1.3e-23 114.8 352 34.7
Atru.chr6.2363 Acer truncatum HOM05D003680 ORTHO05D004264 2.2e-23 114.0 242 38.8
Lsat_1_v5_gn_0_32160 Lactuca sativa HOM05D003680 ORTHO05D004264 2.2e-23 114.0 178 46.6
Rhsim08G0175600 Rhododendron simsii HOM05D003680 ORTHO05D004264 2.2e-23 114.0 350 34.3
CSS0025347 Camellia sinensis var. sinensis HOM05D000527 ORTHO05D000559 2.9e-23 113.6 202 42.6
CSS0032677 Camellia sinensis var. sinensis HOM05D000527 ORTHO05D000559 2.9e-23 113.6 202 42.6
Medtr6g004940 Medicago truncatula HOM05D003680 ORTHO05D004264 2.9e-23 113.6 334 33.2
vmacro23077 Vaccinium macrocarpon HOM05D003680 ORTHO05D004264 3.7e-23 113.2 350 34.9
Os01g0169900 Oryza sativa ssp. japonica HOM05D003680 ORTHO05D004264 4.9e-23 112.8 151 50.3
Thecc.03G023400 Theobroma cacao HOM05D003680 ORTHO05D004264 4.9e-23 112.8 281 38.1
GSVIVG01032424001 Vitis vinifera HOM05D003680 ORTHO05D004264 8.3e-23 112.1 152 51.3
Potri.012G083200 Populus trichocarpa HOM05D003680 ORTHO05D004264 1.1e-22 111.7 342 36.5
C02p07090 Brassica napus HOM05D003680 ORTHO05D004264 1.4e-22 111.3 146 47.3
AL3G10590 Arabidopsis lyrata HOM05D003680 ORTHO05D004264 1.9e-22 110.9 301 37.2
Zm00001eb122990 Zea mays HOM05D003680 ORTHO05D004264 1.9e-22 110.9 347 35.7
Ciclev10019708m.g Citrus clementina HOM05D003680 ORTHO05D004264 5.4e-22 109.4 216 42.1
Manes.06G108400 Manihot esculenta HOM05D003680 ORTHO05D004264 1.2e-21 108.2 297 35.4
Aqoxy3G02827 Aquilegia oxysepala HOM05D003680 ORTHO05D004264 2.0e-21 107.5 340 35.9
AT3G01560 Arabidopsis thaliana HOM05D003680 ORTHO05D004264 2.0e-21 107.5 311 36.0
Sc12g0005110 Simmondsia chinensis HOM05D003680 ORTHO05D004264 3.5e-21 106.7 239 36.4
A02p02610 Brassica napus HOM05D003680 ORTHO05D004264 6.0e-21 105.9 326 35.6
BraA02t05229Z Brassica rapa HOM05D003680 ORTHO05D004264 6.0e-21 105.9 326 35.6
CDE07G1653 Ceratophyllum demersum HOM05D003680 ORTHO05D004264 7.8e-21 105.5 155 46.5
Sabra12G0059900 Salix brachista HOM05D003680 ORTHO05D004264 2.3e-20 104.0 346 34.4
CARHR075340 Cardamine hirsuta HOM05D003680 ORTHO05D004264 3.9e-20 103.2 109 56.0
Aqoxy1G03743 Aquilegia oxysepala HOM05D003680 ORTHO05D004264 8.6e-20 102.1 335 36.1
Mapoly0092s0027 Marchantia polymorpha HOM05D003680 ORTHO05D004264 1.1e-19 101.7 252 38.5
FAN25G3522 Fragaria x ananassa HOM05D003680 ORTHO05D004264 1.5e-19 101.3 118 50.0
FAN04G1021 Fragaria x ananassa HOM05D003680 ORTHO05D004264 1.9e-19 100.9 356 33.7
FAN08G0581 Fragaria x ananassa HOM05D003680 ORTHO05D004264 1.9e-19 100.9 344 33.7
FAN13G0261 Fragaria x ananassa HOM05D003680 ORTHO05D004264 1.9e-19 100.9 332 34.0
CARHR198770 Cardamine hirsuta HOM05D003680 ORTHO05D004264 2.5e-19 100.5 142 45.8
FvH4_5g05870 Fragaria vesca HOM05D003680 ORTHO05D004264 2.5e-19 100.5 356 32.6
Os05g0169400 Oryza sativa ssp. japonica HOM05D003680 ORTHO05D004264 4.3e-19 99.8 126 49.2
SEGI_20908 Sequoiadendron giganteum HOM05D003680 ORTHO05D004264 9.5e-19 98.6 295 34.6
Lj9P445T42 Lonicera japonica HOM05D003680 ORTHO05D004264 1.6e-18 97.8 113 50.4
BolC2t06642H Brassica oleracea HOM05D003680 ORTHO05D004264 2.8e-18 97.1 321 34.3
Actinidia36107 Actinidia chinensis HOM05D003680 ORTHO05D004264 1.1e-17 95.1 293 36.2
Eucgr.K02812 Eucalyptus grandis HOM05D003680 ORTHO05D004264 2.3e-17 94.0 298 35.9
BcaNung03147 Brassica carinata HOM05D003680 ORTHO05D004264 1.5e-16 91.3 300 36.3
Pp3c11_23810 Physcomitrium patens HOM05D003680 ORTHO05D004264 5.8e-16 89.4 190 37.4
Pp3c8_19720 Physcomitrium patens HOM05D003680 ORTHO05D004264 6.4e-15 85.9 232 34.1
HanXRQChr16g0504641 Helianthus annuus HOM05D003680 ORTHO05D004264 1.1e-14 85.1 97 48.5
SMO266G0040 Selaginella moellendorffii HOM05D003680 ORTHO05D004264 4.6e-13 79.7 77 54.5
Carub.0003s0051 Capsella rubella HOM05D003680 ORTHO05D004264 6.0e-13 79.3 300 31.7
Lsat_1_v5_gn_4_76320 Lactuca sativa HOM05D003680 ORTHO05D004264 1.3e-12 78.2 228 33.3
CANSAT80G2707 Cannabis sativa HOM05D003680 ORTHO05D004264 1.7e-12 77.8 289 31.5
COL.COLO4_30132 Corchorus olitorius HOM05D000527 ORTHO05D000559 2.3e-12 77.4 229 34.9
Pp3c24_13440 Physcomitrium patens HOM05D003680 ORTHO05D004264 6.6e-12 75.9 213 35.7
GSVIVG01007680001 Vitis vinifera HOM05D003680 ORTHO05D004264 1.1e-11 75.1 288 33.7
PGR044G1290 Punica granatum HOM05D003680 ORTHO05D004264 2.5e-11 73.9 318 34.0
ECA232G2741 Erigeron canadensis HOM05D003680 ORTHO05D004264 4.3e-11 73.2 219 30.6
Pp3c7_1641 Physcomitrium patens HOM05D003680 ORTHO05D004264 2.1e-10 70.9 166 36.1
Atru.chr9.2544 Acer truncatum HOM05D003680 ORTHO05D004264 4.7e-10 69.7 100 45.0
ECA240G4150 Erigeron canadensis HOM05D003680 ORTHO05D004264 9.9e-08 62.0 84 47.6
CBR_g70713 Chara braunii HOM05D003680 ORTHO05D004264 1.1e-06 58.5 310 31.3
Hma1.2p1_0002F.1_g001880 Hydrangea macrophylla HOM05D003471 ORTHO05D004079 1.9e-06 57.8 213 29.1
HPP92_020273 Vanilla planifolia HOM05D003680 ORTHO05D004264 1.9e-06 57.8 151 37.7


User provided reference genes

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