Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G473.24 Capsicum annuum HOM05D002996 ORTHO05D003536 2.5e-103 378.6 175 100.0
CAN.G625.86 Capsicum annuum HOM05D002996 ORTHO05D003536 4.5e-92 341.3 214 77.1
Solyc02g091410.3 Solanum lycopersicum HOM05D002996 ORTHO05D003536 2.5e-90 335.5 214 75.7
PGSC0003DMG401030647 Solanum tuberosum HOM05D002996 ORTHO05D003536 7.1e-90 334.0 214 75.2
Sopen02g036030 Solanum pennellii HOM05D002996 ORTHO05D003536 9.3e-90 333.6 214 75.2
Nitab4.5_0003360g0070 Nicotiana tabacum HOM05D002996 ORTHO05D003536 6.1e-89 330.9 214 75.2
Nitab4.5_0004399g0040 Nicotiana tabacum HOM05D002996 ORTHO05D003536 5.1e-88 327.8 214 74.8
Peaxi162Scf00003g00013 Petunia axillaris HOM05D002996 ORTHO05D003536 5.7e-87 324.3 235 69.4
Sopen03g007520 Solanum pennellii HOM05D002996 ORTHO05D003536 5.9e-84 314.3 214 70.6
Rhsim08G0086100 Rhododendron simsii HOM05D002996 ORTHO05D003536 7.7e-84 313.9 212 70.3
GSVIVG01030858001 Vitis vinifera HOM05D002996 ORTHO05D003536 2.2e-83 312.4 210 71.9
Solyc03g043660.3 Solanum lycopersicum HOM05D002996 ORTHO05D003536 3.8e-83 311.6 214 70.1
vmacro18050 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 3.8e-83 311.6 212 68.9
SGA_v2.0_scaffold13G06389 Striga asiatica HOM05D002996 ORTHO05D003536 6.5e-83 310.8 209 70.8
Nitab4.5_0002366g0050 Nicotiana tabacum HOM05D002996 ORTHO05D003536 1.1e-82 310.1 213 70.9
Thecc.04G120500 Theobroma cacao HOM05D002996 ORTHO05D003536 2.5e-82 308.9 208 70.7
Cc07_g08150 Coffea canephora HOM05D002996 ORTHO05D003536 3.2e-82 308.5 209 69.9
Cfa007838 Carpinus fangiana HOM05D002996 ORTHO05D003536 9.4e-82 307.0 208 69.7
CiPaw.03G068800 Carya illinoinensis HOM05D002996 ORTHO05D003536 9.4e-82 307.0 208 69.7
Lj6g0006116 Lotus japonicus HOM05D002996 ORTHO05D003536 9.4e-82 307.0 208 69.2
ClCG05G010970 Citrullus lanatus HOM05D002996 ORTHO05D003536 1.2e-81 306.6 214 69.2
Lalb_Chr15g0084771 Lupinus albus HOM05D002996 ORTHO05D003536 1.2e-81 306.6 212 67.0
CSS0016713 Camellia sinensis var. sinensis HOM05D002996 ORTHO05D003536 1.6e-81 306.2 212 68.9
Cpa.g.sc604.6 Carica papaya HOM05D002996 ORTHO05D003536 2.1e-81 305.8 208 69.7
Gohir.A11G162100 Gossypium hirsutum HOM05D002996 ORTHO05D003536 2.7e-81 305.4 208 69.2
CANSAT78G2389 Cannabis sativa HOM05D002996 ORTHO05D003536 3.6e-81 305.1 208 69.7
COL.COLO4_15722 Corchorus olitorius HOM05D002996 ORTHO05D003536 3.6e-81 305.1 209 69.4
MELO3C020288.2 Cucumis melo HOM05D002996 ORTHO05D003536 4.6e-81 304.7 210 69.5
Gohir.A08G052700 Gossypium hirsutum HOM05D002996 ORTHO05D003536 4.6e-81 304.7 208 68.8
VMungo1383G2581 Vigna mungo HOM05D002996 ORTHO05D003536 6.1e-81 304.3 214 66.8
arahy.Tifrunner.gnm1.ann1.RDL55E Arachis hypogaea HOM05D002996 ORTHO05D003536 7.9e-81 303.9 208 68.8
Prupe.3G159400 Prunus persica HOM05D002996 ORTHO05D003536 7.9e-81 303.9 209 68.9
ATR0053G010 Amborella trichopoda HOM05D002996 ORTHO05D003536 1.0e-80 303.5 212 67.9
Gohir.D08G062300 Gossypium hirsutum HOM05D002996 ORTHO05D003536 1.0e-80 303.5 208 68.8
Gohir.D11G168300 Gossypium hirsutum HOM05D002996 ORTHO05D003536 1.0e-80 303.5 208 68.8
Sabra17G0107000 Salix brachista HOM05D002996 ORTHO05D003536 1.0e-80 303.5 214 67.3
MSTRG.3518 Avicennia marina HOM05D002996 ORTHO05D003536 1.4e-80 303.1 208 69.2
Gorai.007G179800 Gossypium raimondii HOM05D002996 ORTHO05D003536 1.4e-80 303.1 208 68.8
Potri.017G128300 Populus trichocarpa HOM05D002996 ORTHO05D003536 1.4e-80 303.1 213 67.1
Sed0026936 Sechium edule HOM05D002996 ORTHO05D003536 1.4e-80 303.1 210 68.6
Hund16206 Selenicereus undatus HOM05D002996 ORTHO05D003536 1.4e-80 303.1 212 66.5
MD17G1256700 Malus domestica HOM05D002996 ORTHO05D003536 1.8e-80 302.8 209 68.4
Manes.01G115900 Manihot esculenta HOM05D002996 ORTHO05D003536 1.8e-80 302.8 209 68.4
TPR.G27148 Trifolium pratense HOM05D002996 ORTHO05D003536 1.8e-80 302.8 214 66.4
Ciclev10010941m.g Citrus clementina HOM05D002996 ORTHO05D003536 2.3e-80 302.4 210 69.5
Gorai.004G064500 Gossypium raimondii HOM05D002996 ORTHO05D003536 2.3e-80 302.4 208 68.8
CDE10G0501 Ceratophyllum demersum HOM05D002996 ORTHO05D003536 5.1e-80 301.2 203 70.0
Psat5g122480 Pisum sativum HOM05D002996 ORTHO05D003536 5.1e-80 301.2 209 67.0
Nn4g24147 Nelumbo nucifera HOM05D002996 ORTHO05D003536 6.7e-80 300.8 209 68.4
QL11p004079 Quercus lobata HOM05D002996 ORTHO05D003536 6.7e-80 300.8 210 67.6
SalBow7G0652 Salvia bowleyana HOM05D002996 ORTHO05D003536 6.7e-80 300.8 208 69.2
Phvul.001G231700 Phaseolus vulgaris HOM05D002996 ORTHO05D003536 8.8e-80 300.4 214 65.9
PGR004G1736 Punica granatum HOM05D002996 ORTHO05D003536 8.8e-80 300.4 209 67.9
TAR622G0566 Trochodendron aralioides HOM05D002996 ORTHO05D003536 1.1e-79 300.1 212 67.5
Glyma.18G039000 Glycine max HOM05D002996 ORTHO05D003536 1.5e-79 299.7 214 65.0
Duzib133G0038 Durio zibethinus HOM05D002996 ORTHO05D003536 2.0e-79 299.3 208 68.3
Medtr3g067690 Medicago truncatula HOM05D002996 ORTHO05D003536 2.0e-79 299.3 209 67.0
Peaxi162Scf00118g00223 Petunia axillaris HOM05D002996 ORTHO05D003536 2.0e-79 299.3 213 68.1
MBI16_g14303_MAGBIO Magnolia biondii HOM05D002996 ORTHO05D003536 3.3e-79 298.5 209 67.5
MSTRG.15319 Avicennia marina HOM05D002996 ORTHO05D003536 5.7e-79 297.7 216 67.1
Sp3g02390 Schrenkiella parvula HOM05D002996 ORTHO05D003536 5.7e-79 297.7 208 68.3
Migut.L00466 Erythranthe guttata HOM05D002996 ORTHO05D003536 7.4e-79 297.4 214 65.4
FvH4_5g27890 Fragaria vesca HOM05D002996 ORTHO05D003536 7.4e-79 297.4 209 67.0
Aa31LG5G13900 Aethionema arabicum HOM05D002996 ORTHO05D003536 9.7e-79 297.0 208 67.8
AL3G13060 Arabidopsis lyrata HOM05D002996 ORTHO05D003536 9.7e-79 297.0 208 67.8
Glyma.11G218000 Glycine max HOM05D002996 ORTHO05D003536 9.7e-79 297.0 209 66.0
Manes.02G074800 Manihot esculenta HOM05D002996 ORTHO05D003536 9.7e-79 297.0 209 67.5
Oeu000903.1 Olea europaea HOM05D002996 ORTHO05D003536 9.7e-79 297.0 209 68.4
AT3G03380 Arabidopsis thaliana HOM05D002996 ORTHO05D003536 1.3e-78 296.6 208 67.8
Thhalv10019951m.g Eutrema salsugineum HOM05D002996 ORTHO05D003536 1.3e-78 296.6 208 67.8
Nitab4.5_0000465g0030 Nicotiana tabacum HOM05D002996 ORTHO05D003536 1.3e-78 296.6 213 68.5
Carub.0003s0254 Capsella rubella HOM05D002996 ORTHO05D003536 1.7e-78 296.2 208 67.8
CARHR077410 Cardamine hirsuta HOM05D002996 ORTHO05D003536 1.7e-78 296.2 208 67.8
Os02g0712000 Oryza sativa ssp. japonica HOM05D002996 ORTHO05D003536 1.7e-78 296.2 212 65.6
Atru.chr1.1814 Acer truncatum HOM05D002996 ORTHO05D003536 2.2e-78 295.8 209 67.9
DCAR_010737 Daucus carota HOM05D002996 ORTHO05D003536 2.8e-78 295.4 212 65.1
FAN04G0036 Fragaria x ananassa HOM05D002996 ORTHO05D003536 2.8e-78 295.4 209 66.5
Eucgr.F02825 Eucalyptus grandis HOM05D002996 ORTHO05D003536 3.7e-78 295.0 208 66.8
RcHm_v2.0_Chr7g0220101 Rosa chinensis HOM05D002996 ORTHO05D003536 3.7e-78 295.0 209 66.5
A06p26370 Brassica napus HOM05D002996 ORTHO05D003536 4.8e-78 294.7 208 67.8
BNapus_Darmor_BZH_scaffold_162p00130 Brassica napus HOM05D002996 ORTHO05D003536 4.8e-78 294.7 208 67.8
BNapus_Darmor_BZH_scaffold_78p00120 Brassica napus HOM05D002996 ORTHO05D003536 4.8e-78 294.7 208 67.8
BolC1t05834H Brassica oleracea HOM05D002996 ORTHO05D003536 4.8e-78 294.7 208 67.8
Sc10g0000830 Simmondsia chinensis HOM05D002996 ORTHO05D003536 1.4e-77 293.1 210 66.2
AUR62023190 Chenopodium quinoa HOM05D002996 ORTHO05D003536 1.8e-77 292.7 212 63.7
AUR62023237 Chenopodium quinoa HOM05D002996 ORTHO05D003536 1.8e-77 292.7 212 63.7
FAN18G1791 Fragaria x ananassa HOM05D002996 ORTHO05D003536 1.8e-77 292.7 210 66.7
Aqoxy3G00131_Aqoxy3G00132 Aquilegia oxysepala HOM05D002996 ORTHO05D003536 2.4e-77 292.4 208 66.8
BcaC05g30278 Brassica carinata HOM05D002996 ORTHO05D003536 2.4e-77 292.4 208 66.8
A05p43840 Brassica napus HOM05D002996 ORTHO05D003536 2.4e-77 292.4 208 66.8
BraA05t23122Z Brassica rapa HOM05D002996 ORTHO05D003536 2.4e-77 292.4 208 66.8
Haze_14227 Corylus avellana HOM05D002996 ORTHO05D003536 3.1e-77 292.0 222 64.9
Ca_08163_v3 Cicer arietinum L. HOM05D002996 ORTHO05D003536 4.1e-77 291.6 209 64.6
BcaC05g30533 Brassica carinata HOM05D002996 ORTHO05D003536 6.9e-77 290.8 208 66.3
BcaC09g47743 Brassica carinata HOM05D002996 ORTHO05D003536 6.9e-77 290.8 208 67.3
C05p63430 Brassica napus HOM05D002996 ORTHO05D003536 6.9e-77 290.8 208 66.3
BolC5t35007H Brassica oleracea HOM05D002996 ORTHO05D003536 6.9e-77 290.8 208 66.3
Zm00001eb252510 Zea mays HOM05D002996 ORTHO05D003536 6.9e-77 290.8 210 64.8
HanXRQChr07g0193641 Helianthus annuus HOM05D002996 ORTHO05D003536 1.2e-76 290.0 208 66.3
TWI74G1665 Tripterygium wilfordii HOM05D002996 ORTHO05D003536 1.5e-76 289.7 209 64.6
Ah.16g101290 Amaranthus hybridus HOM05D002996 ORTHO05D003536 2.0e-76 289.3 210 63.8
EL10Ac2g04480 Beta vulgaris HOM05D002996 ORTHO05D003536 2.0e-76 289.3 210 63.3
TWI77G0049 Tripterygium wilfordii HOM05D002996 ORTHO05D003536 2.6e-76 288.9 209 65.1
Lsat_1_v5_gn_4_154680 Lactuca sativa HOM05D002996 ORTHO05D003536 5.9e-76 287.7 211 65.4
vmacro05502 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 5.9e-76 287.7 213 63.4
BraA01t04583Z Brassica rapa HOM05D002996 ORTHO05D003536 1.0e-75 287.0 208 66.3
Rhsim10G0079400 Rhododendron simsii HOM05D002996 ORTHO05D003536 3.8e-75 285.0 212 62.7
Oeu047419.3 Olea europaea HOM05D002996 ORTHO05D003536 5.0e-75 284.6 249 59.0
PSO017G4487 Papaver somniferum HOM05D002996 ORTHO05D003536 1.1e-74 283.5 212 60.8
ECA232G3169 Erigeron canadensis HOM05D002996 ORTHO05D003536 1.9e-74 282.7 208 65.4
TAR374G0579 Trochodendron aralioides HOM05D002996 ORTHO05D003536 1.9e-74 282.7 208 65.9
PSO478G4946 Papaver somniferum HOM05D002996 ORTHO05D003536 3.2e-74 282.0 212 61.3
SEGI_30841 Sequoiadendron giganteum HOM05D002996 ORTHO05D003536 3.6e-73 278.5 210 62.4
Migut.H00264 Erythranthe guttata HOM05D002996 ORTHO05D003536 6.1e-73 277.7 214 62.6
Mapoly0003s0272 Marchantia polymorpha HOM05D002996 ORTHO05D003536 7.9e-73 277.3 208 62.5
THA.LOC104827237 Tarenaya hassleriana HOM05D002996 ORTHO05D003536 2.3e-72 275.8 202 65.8
ECA238G4747 Erigeron canadensis HOM05D002996 ORTHO05D003536 2.6e-71 272.3 191 68.6
Medtr3g067695 Medicago truncatula HOM05D002996 ORTHO05D003536 3.3e-71 271.9 209 60.3
Potri.004G088600 Populus trichocarpa HOM05D002996 ORTHO05D003536 5.7e-71 271.2 212 60.8
Duzib211G0161 Durio zibethinus HOM05D002996 ORTHO05D003536 1.4e-69 266.5 156 75.6
SMO361G0084 Selaginella moellendorffii HOM05D002996 ORTHO05D003536 3.1e-69 265.4 206 58.3
Lsat_1_v5_gn_2_81521 Lactuca sativa HOM05D002996 ORTHO05D003536 7.0e-69 264.2 208 63.5
Actinidia17657 Actinidia chinensis HOM05D002996 ORTHO05D003536 9.1e-69 263.8 136 85.3
Sabra04G0059000 Salix brachista HOM05D002996 ORTHO05D003536 9.1e-69 263.8 209 60.3
CSS0002683 Camellia sinensis var. sinensis HOM05D002996 ORTHO05D003536 3.5e-68 261.9 181 70.7
PSO339G5742 Papaver somniferum HOM05D002996 ORTHO05D003536 7.7e-68 260.8 209 59.8
Pp3c2_7790 Physcomitrium patens HOM05D002996 ORTHO05D003536 7.7e-68 260.8 210 58.6
Manes.01G116000 Manihot esculenta HOM05D002996 ORTHO05D003536 5.0e-67 258.1 208 59.1
Rhsim10G0079500 Rhododendron simsii HOM05D002996 ORTHO05D003536 1.5e-66 256.5 211 58.8
SalBow1G7030 Salvia bowleyana HOM05D002996 ORTHO05D003536 1.9e-66 256.1 201 60.7
Sabra04G0059100 Salix brachista HOM05D002996 ORTHO05D003536 9.7e-63 243.8 210 55.7
Pp3c1_28480 Physcomitrium patens HOM05D002996 ORTHO05D003536 1.4e-61 240.0 209 56.0
vmacro05505 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 4.1e-61 238.4 190 62.1
PSO170G1396 Papaver somniferum HOM05D002996 ORTHO05D003536 1.2e-60 236.9 212 54.2
PSO407G0242 Papaver somniferum HOM05D002996 ORTHO05D003536 1.0e-59 233.8 212 54.7
Potri.004G088700 Populus trichocarpa HOM05D002996 ORTHO05D003536 3.8e-59 231.9 209 54.1
HPP92_003793 Vanilla planifolia HOM05D002996 ORTHO05D003536 5.0e-59 231.5 126 78.6
Lj2C435G10 Lonicera japonica HOM05D002996 ORTHO05D003536 2.7e-52 209.1 157 65.6
vmacro05509 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 1.0e-51 207.2 212 51.9
CAN.G11.11 Capsicum annuum HOM05D002996 ORTHO05D003536 2.5e-50 202.6 155 63.9
CsaV3_1G027810 Cucumis sativus L. HOM05D002996 ORTHO05D003536 9.4e-50 200.7 116 79.3
HanXRQChr09g0262271 Helianthus annuus HOM05D002996 ORTHO05D003536 4.7e-49 198.4 164 59.1
Dinv19012 Davidia involucrata HOM05D002996 ORTHO05D003536 3.4e-47 192.2 93 90.3
CSS0034868 Camellia sinensis var. sinensis HOM05D002996 ORTHO05D003536 6.6e-43 177.9 90 87.8
Cre03.g180650 Chlamydomonas reinhardtii HOM05D002996 ORTHO05D003536 7.5e-39 164.5 135 54.1
MCO10G011 Micromonas commoda HOM05D002996 ORTHO05D003536 2.0e-31 139.8 116 52.6
Ca_17110_v3 Cicer arietinum L. HOM05D002996 ORTHO05D003536 4.4e-31 138.7 119 58.8
arahy.Tifrunner.gnm1.ann1.GD0F1M Arachis hypogaea HOM05D002996 ORTHO05D003536 3.5e-28 129.0 113 58.4
CDE10G1183 Ceratophyllum demersum HOM05D002996 ORTHO05D003536 3.2e-21 105.9 53 84.9
Dinv19013 Davidia involucrata HOM05D002996 ORTHO05D000378 1.6e-20 103.6 81 63.0
Lsat_1_v5_gn_2_24061 Lactuca sativa HOM05D002996 ORTHO05D003536 2.7e-20 102.8 109 48.6
CSS0000944 Camellia sinensis var. sinensis HOM05D002996 ORTHO05D003536 3.5e-20 102.4 56 76.8
Cfa025176 Carpinus fangiana HOM05D002996 ORTHO05D003536 3.9e-11 72.4 123 33.3
CSS0001283 Camellia sinensis var. sinensis HOM05D002996 ORTHO05D003536 2.1e-09 66.6 56 57.1
Hma1.2p1_0021F.1_g014340 Hydrangea macrophylla HOM05D003438 ORTHO05D004235 3.1e-08 62.8 45 64.4
HanXRQChr09g0262281 Helianthus annuus HOM05D002996 ORTHO05D003536 5.2e-08 62.0 84 42.9


User provided reference genes

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