Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G473.156 Capsicum annuum HOM05D005312 ORTHO05D006459 7.1e-240 833.6 430 100.0
PGSC0003DMG400020194 Solanum tuberosum HOM05D005312 ORTHO05D006459 9.6e-221 770.0 430 91.9
Sopen02g039150 Solanum pennellii HOM05D005312 ORTHO05D006459 4.2e-216 754.6 430 89.8
Solyc02g094480.4 Solanum lycopersicum HOM05D000001 ORTHO05D000003 7.1e-216 753.8 429 89.5
Peaxi162Scf00420g00087 Petunia axillaris HOM05D005312 ORTHO05D006459 6.0e-207 724.2 433 87.5
Nitab4.5_0025697g0010 Nicotiana tabacum HOM05D005312 ORTHO05D006459 1.8e-190 669.5 357 93.0
Nitab4.5_0002172g0150 Nicotiana tabacum HOM05D005312 ORTHO05D006459 2.6e-178 629.0 397 81.6
Oeu039797.1 Olea europaea HOM05D005312 ORTHO05D006459 7.0e-171 604.4 436 74.1
Cc07_g01210 Coffea canephora HOM05D005312 ORTHO05D006459 1.0e-169 600.5 440 73.0
CSS0036880 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 3.8e-169 598.6 435 74.5
Dinv33289 Davidia involucrata HOM05D005312 ORTHO05D006459 6.5e-169 597.8 431 73.8
MSTRG.3045 Avicennia marina HOM05D005312 ORTHO05D006459 4.2e-168 595.1 439 72.2
Hma1.2p1_0868F.1_g230570 Hydrangea macrophylla HOM05D005312 ORTHO05D006459 4.7e-167 591.7 430 71.2
Migut.F00017 Erythranthe guttata HOM05D005312 ORTHO05D006459 1.0e-166 590.5 440 72.0
SalBow4G2016 Salvia bowleyana HOM05D005312 ORTHO05D006459 2.3e-166 589.3 436 71.1
Actinidia37728 Actinidia chinensis HOM05D005312 ORTHO05D006459 4.8e-164 581.6 385 74.5
vmacro22240 Vaccinium macrocarpon HOM05D005312 ORTHO05D006459 1.9e-160 569.7 390 72.8
Rhsim10G0001700 Rhododendron simsii HOM05D005312 ORTHO05D006459 8.0e-159 564.3 433 69.7
DCAR_002973 Daucus carota HOM05D005312 ORTHO05D006459 2.6e-157 559.3 414 68.6
QL02p069878 Quercus lobata HOM05D005312 ORTHO05D006459 3.1e-155 552.4 389 69.9
Cfa007172 Carpinus fangiana HOM05D005312 ORTHO05D006459 4.2e-152 542.0 384 70.1
TAR629G1483 Trochodendron aralioides HOM05D005312 ORTHO05D006459 4.2e-152 542.0 387 71.3
COL.COLO4_13349 Corchorus olitorius HOM05D005312 ORTHO05D006459 3.6e-151 538.9 393 67.9
TAR371G0255 Trochodendron aralioides HOM05D005312 ORTHO05D006459 1.4e-150 537.0 390 69.5
MD17G1007700 Malus domestica HOM05D005312 ORTHO05D006459 5.2e-150 535.0 435 66.9
Thecc.04G046000 Theobroma cacao HOM05D005312 ORTHO05D006459 6.8e-150 534.6 393 67.2
Prupe.3G312600 Prunus persica HOM05D005312 ORTHO05D006459 1.5e-149 533.5 438 67.8
Oeu003422.1 Olea europaea HOM05D005312 ORTHO05D006459 4.4e-149 531.9 448 65.4
Ciclev10015374m.g Citrus clementina HOM05D005312 ORTHO05D006459 7.5e-149 531.2 388 68.0
Duzib264G0870 Durio zibethinus HOM05D005312 ORTHO05D006459 1.7e-148 530.0 393 67.7
CiPaw.03G003000 Carya illinoinensis HOM05D005312 ORTHO05D006459 2.2e-148 529.6 387 68.2
Lj7A616T62 Lonicera japonica HOM05D005312 ORTHO05D006459 2.8e-148 529.3 396 67.7
Cpa.g.sc70.78 Carica papaya HOM05D005312 ORTHO05D006459 3.7e-148 528.9 439 65.1
CANSAT64G1152 Cannabis sativa HOM05D005312 ORTHO05D006459 7.0e-147 524.6 390 66.7
MD09G1004000 Malus domestica HOM05D005312 ORTHO05D006459 7.0e-147 524.6 405 66.9
Aa31LG2G5770 Aethionema arabicum HOM05D005312 ORTHO05D006459 9.2e-147 524.2 385 66.0
SGA_v2.0_scaffold44G16946 Striga asiatica HOM05D005312 ORTHO05D006459 9.2e-147 524.2 450 64.9
FvH4_6g54210 Fragaria vesca HOM05D005312 ORTHO05D006459 1.6e-146 523.5 435 66.4
FAN09G1737 Fragaria x ananassa HOM05D005312 ORTHO05D006459 1.6e-146 523.5 435 66.4
FAN05G1132 Fragaria x ananassa HOM05D005312 ORTHO05D006459 2.7e-146 522.7 434 65.2
Sed0007531 Sechium edule HOM05D005312 ORTHO05D006459 4.5e-146 521.9 434 65.0
FAN14G0182 Fragaria x ananassa HOM05D005312 ORTHO05D006459 7.8e-146 521.2 435 66.2
ClCG05G012720 Citrullus lanatus HOM05D005312 ORTHO05D006459 1.3e-145 520.4 398 65.6
RcHm_v2.0_Chr2g0176401 Rosa chinensis HOM05D005312 ORTHO05D006459 2.9e-145 519.2 394 67.8
Atru.chr6.2642 Acer truncatum HOM05D005312 ORTHO05D006459 8.6e-145 517.7 392 66.8
FAN02G3987 Fragaria x ananassa HOM05D005312 ORTHO05D006459 5.6e-144 515.0 434 65.4
EL10As7g23753 Beta vulgaris HOM05D005312 ORTHO05D006459 9.5e-144 514.2 404 64.9
Duzib147G0684 Durio zibethinus HOM05D005312 ORTHO05D006459 1.2e-143 513.8 387 66.9
Nn4g22171 Nelumbo nucifera HOM05D005312 ORTHO05D006459 1.6e-143 513.5 388 66.5
CSS0020784 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 2.8e-143 512.7 430 67.9
Manes.04G092300 Manihot esculenta HOM05D005312 ORTHO05D006459 6.1e-143 511.5 441 64.4
Duzib187G0698 Durio zibethinus HOM05D005312 ORTHO05D006459 2.3e-142 509.6 388 65.7
MELO3C014806.2 Cucumis melo HOM05D005312 ORTHO05D006459 3.4e-141 505.8 384 65.1
THA.LOC104823996 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 5.8e-141 505.0 393 65.4
Manes.11G077500 Manihot esculenta HOM05D005312 ORTHO05D006459 7.5e-141 504.6 442 64.0
Gohir.D07G239300 Gossypium hirsutum HOM05D005312 ORTHO05D006459 1.7e-140 503.4 390 65.1
Gorai.001G275400 Gossypium raimondii HOM05D005312 ORTHO05D006459 1.7e-140 503.4 390 65.1
TWI32G0425 Tripterygium wilfordii HOM05D005312 ORTHO05D006459 2.2e-140 503.1 390 66.4
Ah.02g128920 Amaranthus hybridus HOM05D005312 ORTHO05D006459 1.4e-139 500.4 396 64.1
Thhalv10004350m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 1.4e-139 500.4 384 65.6
Glyma.02G066000 Glycine max HOM05D005312 ORTHO05D006459 2.4e-139 499.6 385 66.0
Gohir.A07G232100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 2.4e-139 499.6 390 64.9
Carub.0005s0483 Capsella rubella HOM05D005312 ORTHO05D006459 9.2e-139 497.7 384 66.1
Sp2g15910 Schrenkiella parvula HOM05D005312 ORTHO05D006459 1.2e-138 497.3 386 66.3
Sabra14G0109800 Salix brachista HOM05D005312 ORTHO05D006459 1.6e-138 496.9 399 63.2
Glyma.16G146900 Glycine max HOM05D005312 ORTHO05D006459 2.7e-138 496.1 444 60.6
AT3G26780 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 6.0e-138 495.0 385 65.7
Sc03g0004830 Simmondsia chinensis HOM05D005312 ORTHO05D006459 6.6e-137 491.5 392 63.8
Aqoxy5G03173 Aquilegia oxysepala HOM05D005312 ORTHO05D006459 8.6e-137 491.1 389 63.8
Phvul.004G070300 Phaseolus vulgaris HOM05D005312 ORTHO05D006459 8.6e-137 491.1 386 64.8
AL5G15650 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 1.5e-136 490.3 384 65.6
arahy.Tifrunner.gnm1.ann1.ZY683S Arachis hypogaea HOM05D005312 ORTHO05D006459 2.5e-136 489.6 402 63.4
Sabra02G0180200 Salix brachista HOM05D005312 ORTHO05D006459 2.5e-136 489.6 391 63.9
Potri.014G145900 Populus trichocarpa HOM05D005312 ORTHO05D006459 7.3e-136 488.0 399 62.4
Potri.002G236600 Populus trichocarpa HOM05D005312 ORTHO05D006459 1.6e-135 486.9 396 62.9
BraA02t08484Z Brassica rapa HOM05D005312 ORTHO05D006459 2.1e-135 486.5 384 64.8
A02p34780 Brassica napus HOM05D005312 ORTHO05D006459 2.8e-135 486.1 384 65.1
Eucgr.G01940 Eucalyptus grandis HOM05D005312 ORTHO05D006459 8.0e-135 484.6 391 62.4
THA.LOC104805304 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 8.0e-135 484.6 392 65.3
Lalb_Chr02g0156821 Lupinus albus HOM05D005312 ORTHO05D006459 1.1e-134 484.2 390 66.4
TPR.G36663 Trifolium pratense HOM05D005312 ORTHO05D006459 1.4e-134 483.8 391 64.5
Lsat_1_v5_gn_2_94460 Lactuca sativa HOM05D005312 ORTHO05D006459 1.8e-134 483.4 389 63.5
C02p53340 Brassica napus HOM05D005312 ORTHO05D006459 2.3e-134 483.0 384 64.8
BcaC03g17388 Brassica carinata HOM05D005312 ORTHO05D006459 3.1e-134 482.6 384 64.8
BolC2t11405H Brassica oleracea HOM05D005312 ORTHO05D006459 3.1e-134 482.6 384 64.8
Psat1g097480 Pisum sativum HOM05D005312 ORTHO05D006459 6.8e-134 481.5 388 65.2
PSO017G1316 Papaver somniferum HOM05D005312 ORTHO05D006459 8.9e-134 481.1 401 63.1
PSO478G3188 Papaver somniferum HOM05D005312 ORTHO05D006459 1.2e-133 480.7 394 63.7
arahy.Tifrunner.gnm1.ann1.JN3C7K Arachis hypogaea HOM05D005312 ORTHO05D006459 2.9e-132 476.1 405 61.5
Lj2g0017210 Lotus japonicus HOM05D005312 ORTHO05D006459 2.9e-132 476.1 384 63.8
Lalb_Chr06g0173771 Lupinus albus HOM05D005312 ORTHO05D006459 2.9e-132 476.1 438 61.0
AL1G24500 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 6.4e-132 474.9 386 62.7
BcaB07g30210 Brassica carinata HOM05D005312 ORTHO05D006459 1.1e-131 474.2 387 62.8
MBI07_g40342_MAGBIO Magnolia biondii HOM05D005312 ORTHO05D006459 1.9e-131 473.4 388 64.2
Aa31LG1G1910 Aethionema arabicum HOM05D005312 ORTHO05D006459 9.2e-131 471.1 389 62.0
AUR62041074 Chenopodium quinoa HOM05D005312 ORTHO05D006459 2.7e-130 469.5 393 61.8
AT1G12850 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 6.0e-130 468.4 387 62.0
HanXRQChr14g0451381 Helianthus annuus HOM05D005312 ORTHO05D006459 6.0e-130 468.4 378 63.5
Medtr6g033275 Medicago truncatula HOM05D005312 ORTHO05D006459 3.9e-129 465.7 383 63.2
Sp1g11430 Schrenkiella parvula HOM05D005312 ORTHO05D006459 3.9e-129 465.7 386 61.1
CARHR013180 Cardamine hirsuta HOM05D005312 ORTHO05D006459 2.5e-128 463.0 433 60.3
PGR083G1093 Punica granatum HOM05D005312 ORTHO05D006459 9.9e-125 451.1 392 59.4
CARHR147850 Cardamine hirsuta HOM05D005312 ORTHO05D006459 3.7e-124 449.1 386 62.2
Carub.0001s1260 Capsella rubella HOM05D005312 ORTHO05D006459 8.3e-124 448.0 387 60.5
Thhalv10007881m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 3.5e-122 442.6 385 59.5
Gohir.A10G070100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 3.9e-121 439.1 401 58.1
C08p15720 Brassica napus HOM05D005312 ORTHO05D006459 2.5e-120 436.4 387 59.2
BolC8t49199H Brassica oleracea HOM05D005312 ORTHO05D006459 3.3e-120 436.0 387 59.2
Gorai.011G088100 Gossypium raimondii HOM05D005312 ORTHO05D006459 9.5e-120 434.5 402 56.7
Gohir.D10G081000 Gossypium hirsutum HOM05D005312 ORTHO05D006459 1.2e-119 434.1 402 57.2
BcaB03g13161 Brassica carinata HOM05D005312 ORTHO05D006459 1.8e-118 430.3 390 59.0
A08p32570 Brassica napus HOM05D005312 ORTHO05D006459 1.7e-116 423.7 386 58.0
BraA08t35181Z Brassica rapa HOM05D005312 ORTHO05D006459 5.4e-115 418.7 386 57.5
CDE06G1073 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 6.0e-114 415.2 381 59.1
CDE02G3855 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 7.8e-114 414.8 380 59.2
AUR62037835 Chenopodium quinoa HOM05D005312 ORTHO05D006459 3.9e-113 412.5 323 64.4
ATR0582G189 Amborella trichopoda HOM05D005312 ORTHO05D006459 8.1e-111 404.8 417 54.0
Zm00001eb170350 Zea mays HOM05D005312 ORTHO05D006459 1.1e-107 394.4 386 57.0
Os11g0522000 Oryza sativa ssp. japonica HOM05D005312 ORTHO05D006459 1.3e-105 387.5 386 55.2
SEGI_01379 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 4.8e-103 379.0 395 52.9
GSVIVG01033003001 Vitis vinifera HOM05D005312 ORTHO05D006459 4.5e-101 372.5 309 62.5
ECA238G3491 Erigeron canadensis HOM05D000001 ORTHO05D000003 8.7e-97 358.2 340 58.2
Ca_26608_v3 Cicer arietinum L. HOM05D005312 ORTHO05D006459 5.3e-86 322.4 418 45.7
unitig_37.g12041 Utricularia gibba HOM05D005312 ORTHO05D006459 3.2e-75 286.6 228 64.0
VMungo0464G0174 Vigna mungo HOM05D005312 ORTHO05D006459 4.6e-74 282.7 248 59.7
ECA246G2144 Erigeron canadensis HOM05D005312 ORTHO05D006459 1.4e-73 281.2 249 58.2
SEGI_20575 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 1.4e-70 271.2 295 49.5
Pp3c21_20660 Physcomitrium patens HOM05D005312 ORTHO05D006459 6.5e-68 262.3 396 39.4
Actinidia19557 Actinidia chinensis HOM05D005312 ORTHO05D006459 1.1e-67 261.5 154 83.1
HPP92_008243 Vanilla planifolia HOM05D005312 ORTHO05D006459 2.3e-65 253.8 230 59.6
CSS0007293 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 5.3e-62 242.7 195 75.4
unitig_37.g12040 Utricularia gibba HOM05D005312 ORTHO05D006459 2.1e-58 230.7 155 74.8
Nn3g16305 Nelumbo nucifera HOM05D005312 ORTHO05D006459 2.8e-55 220.3 204 58.3
VMungo0464G1790 Vigna mungo HOM05D005312 ORTHO05D006459 5.0e-52 209.5 144 72.2
Haze_14938 Corylus avellana HOM05D005312 ORTHO05D006459 2.5e-51 207.2 147 71.4
AagrBONN_evm.TU.Sc2ySwM_344.1953 Anthoceros agrestis HOM05D005312 ORTHO05D006459 2.5e-43 180.6 313 35.8
CBR_g2835 Chara braunii HOM05D005312 ORTHO05D006459 2.5e-43 180.6 356 35.4
SGA_v2.0_scaffold173G39196 Striga asiatica HOM05D005312 ORTHO05D006459 3.5e-29 133.7 111 65.8
SEGI_29311 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 1.1e-17 95.5 79 59.5
CARHR120940 Cardamine hirsuta HOM05D005312 ORTHO05D006459 2.4e-14 84.3 66 60.6
Actinidia19558 Actinidia chinensis HOM05D005312 ORTHO05D006459 9.5e-11 72.4 103 49.5
PRCOL_00002808 Prasinoderma coloniale HOM05D005312 ORTHO05D006459 4.9e-07 60.1 339 22.4
C05p10420 Brassica napus HOM05D005312 ORTHO05D006459 7.1e-06 56.2 36 58.3
Pp3c8_13210 Physcomitrium patens HOM05D003180 ORTHO05D003664 7.1e-06 56.2 137 33.6


User provided reference genes

Program Settings