Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G470.7 Capsicum annuum HOM05D005053 ORTHO05D006206 4.7e-123 444.5 218 100.0
Solyc02g065180.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 8.3e-120 433.7 218 97.2
Sopen02g015310 Solanum pennellii HOM05D005053 ORTHO05D006206 8.3e-120 433.7 218 97.2
Nitab4.5_0000806g0140 Nicotiana tabacum HOM05D005053 ORTHO05D006206 9.4e-116 420.2 218 93.6
Peaxi162Scf00049g01010 Petunia axillaris HOM05D005053 ORTHO05D006206 6.6e-109 397.5 231 84.8
Cc07_g05640 Coffea canephora HOM05D005053 ORTHO05D006206 1.6e-102 376.3 219 83.1
HanXRQChr07g0199901 Helianthus annuus HOM05D005053 ORTHO05D006206 1.9e-100 369.4 219 81.3
HanXRQChr14g0448331 Helianthus annuus HOM05D005053 ORTHO05D006206 4.3e-100 368.2 219 81.3
Nitab4.5_0009901g0010 Nicotiana tabacum HOM05D005053 ORTHO05D006206 2.8e-99 365.5 203 88.2
Lsat_1_v5_gn_2_86920 Lactuca sativa HOM05D005053 ORTHO05D006206 6.2e-99 364.4 219 79.9
Migut.H00475 Erythranthe guttata HOM05D005053 ORTHO05D006206 8.0e-99 364.0 219 79.9
Actinidia12070 Actinidia chinensis HOM05D005053 ORTHO05D006206 1.8e-98 362.8 219 80.4
CSS0024932 Camellia sinensis var. sinensis HOM05D005053 ORTHO05D006206 4.0e-98 361.7 219 78.5
ECA238G1636 Erigeron canadensis HOM05D005053 ORTHO05D006206 1.2e-97 360.1 219 79.5
Lj4g0026236 Lotus japonicus HOM05D005053 ORTHO05D006206 1.5e-97 359.8 219 78.1
Actinidia36514 Actinidia chinensis HOM05D005053 ORTHO05D006206 3.4e-97 358.6 219 80.8
Glyma.17G180900 Glycine max HOM05D005053 ORTHO05D006206 7.5e-97 357.5 219 77.6
Ca_22210_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 1.3e-96 356.7 219 78.1
MELO3C007534.2 Cucumis melo HOM05D005053 ORTHO05D006206 4.9e-96 354.8 221 77.4
Hma1.2p1_0687F.1_g203520 Hydrangea macrophylla HOM05D005053 ORTHO05D006206 4.9e-96 354.8 219 77.6
ClCG01G016600 Citrullus lanatus HOM05D005053 ORTHO05D006206 6.4e-96 354.4 221 77.8
CsaV3_6G042980 Cucumis sativus L. HOM05D005053 ORTHO05D006206 8.3e-96 354.0 221 77.4
RcHm_v2.0_Chr2g0104011 Rosa chinensis HOM05D005053 ORTHO05D006206 8.3e-96 354.0 220 78.6
arahy.Tifrunner.gnm1.ann1.VE46QQ Arachis hypogaea HOM05D005053 ORTHO05D006206 1.4e-95 353.2 219 77.6
Lalb_Chr09g0333681 Lupinus albus HOM05D005053 ORTHO05D006206 2.4e-95 352.4 219 76.3
PGR102G2816 Punica granatum HOM05D005053 ORTHO05D006206 2.4e-95 352.4 219 76.7
Atru.chr3.440 Acer truncatum HOM05D005053 ORTHO05D006206 3.2e-95 352.1 219 78.5
Aqoxy6G00906 Aquilegia oxysepala HOM05D005053 ORTHO05D006206 3.2e-95 352.1 219 77.6
Manes.13G129200 Manihot esculenta HOM05D005053 ORTHO05D006206 3.2e-95 352.1 219 77.6
arahy.Tifrunner.gnm1.ann1.IMYE37 Arachis hypogaea HOM05D005053 ORTHO05D006206 4.1e-95 351.7 219 77.2
GSVIVG01005060001 Vitis vinifera HOM05D005053 ORTHO05D006206 4.1e-95 351.7 219 77.2
Cpa.g.sc6.408 Carica papaya HOM05D005053 ORTHO05D006206 7.0e-95 350.9 219 77.2
MD15G1276200 Malus domestica HOM05D005053 ORTHO05D006206 7.0e-95 350.9 219 77.6
Thecc.01G049700 Theobroma cacao HOM05D005053 ORTHO05D006206 1.2e-94 350.1 220 78.6
vmacro17912 Vaccinium macrocarpon HOM05D005053 ORTHO05D006206 1.6e-94 349.7 219 75.8
COL.COLO4_11341 Corchorus olitorius HOM05D005053 ORTHO05D006206 2.0e-94 349.4 219 77.6
Medtr8g079240 Medicago truncatula HOM05D005053 ORTHO05D006206 2.0e-94 349.4 219 76.7
Phvul.003G248000 Phaseolus vulgaris HOM05D005053 ORTHO05D006206 2.0e-94 349.4 219 76.3
Gorai.008G072800 Gossypium raimondii HOM05D005053 ORTHO05D006206 1.0e-93 347.1 219 76.7
VMungo0251G0766 Vigna mungo HOM05D005053 ORTHO05D006206 1.0e-93 347.1 219 76.7
unitig_736.g22369 Utricularia gibba HOM05D005053 ORTHO05D006206 1.3e-93 346.7 221 75.6
FvH4_1g14960 Fragaria vesca HOM05D005053 ORTHO05D006206 1.7e-93 346.3 221 78.3
Sed0021889 Sechium edule HOM05D005053 ORTHO05D006206 1.7e-93 346.3 220 75.9
MD02G1163200 Malus domestica HOM05D005053 ORTHO05D006206 3.0e-93 345.5 220 77.3
Sc03g0001310 Simmondsia chinensis HOM05D005053 ORTHO05D006206 3.0e-93 345.5 218 76.6
FAN26G1713 Fragaria x ananassa HOM05D005053 ORTHO05D006206 3.9e-93 345.1 221 77.8
FAN23G1215 Fragaria x ananassa HOM05D005053 ORTHO05D006206 5.0e-93 344.7 221 77.4
SGA_v2.0_scaffold27G11440 Striga asiatica HOM05D005053 ORTHO05D006206 5.0e-93 344.7 220 75.5
SGA_v2.0_scaffold204G41608 Striga asiatica HOM05D005053 ORTHO05D006206 1.1e-92 343.6 220 75.0
FAN19G0163 Fragaria x ananassa HOM05D005053 ORTHO05D006206 1.9e-92 342.8 221 77.4
FAN28G1734 Fragaria x ananassa HOM05D005053 ORTHO05D006206 3.3e-92 342.0 222 77.9
EL10Ac6g15144 Beta vulgaris HOM05D005053 ORTHO05D006206 4.3e-92 341.7 218 76.1
Hund13583 Selenicereus undatus HOM05D005053 ORTHO05D006206 4.3e-92 341.7 218 74.3
Oeu004887.1 Olea europaea HOM05D005053 ORTHO05D006206 5.6e-92 341.3 219 76.7
AUR62001971 Chenopodium quinoa HOM05D005053 ORTHO05D006206 7.3e-92 340.9 218 75.7
Cfa003962 Carpinus fangiana HOM05D005053 ORTHO05D006206 2.8e-91 339.0 220 75.5
MSTRG.15402 Avicennia marina HOM05D005053 ORTHO05D006206 4.7e-91 338.2 228 72.4
Ciclev10026393m.g Citrus clementina HOM05D005053 ORTHO05D006206 8.1e-91 337.4 237 71.7
TAR376G0500 Trochodendron aralioides HOM05D005053 ORTHO05D006206 2.6e-89 332.4 219 74.4
THA.LOC104819229 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 5.8e-89 331.3 219 73.5
PSO675G4006 Papaver somniferum HOM05D005053 ORTHO05D006206 7.5e-89 330.9 219 74.0
PSO541G4895 Papaver somniferum HOM05D005053 ORTHO05D006206 1.7e-88 329.7 219 74.0
Potri.007G037800 Populus trichocarpa HOM05D005053 ORTHO05D006206 2.9e-88 328.9 219 74.0
Eucgr.H01988 Eucalyptus grandis HOM05D005053 ORTHO05D006206 6.4e-88 327.8 219 70.8
THA.LOC104821262 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 1.4e-87 326.6 219 72.1
CARHR280750 Cardamine hirsuta HOM05D005053 ORTHO05D006206 2.7e-86 322.4 218 72.0
AL8G44450 Arabidopsis lyrata HOM05D005053 ORTHO05D006206 3.5e-86 322.0 219 72.6
Carub.0008s2757 Capsella rubella HOM05D005053 ORTHO05D006206 6.0e-86 321.2 219 72.1
AT5G66930 Arabidopsis thaliana HOM05D005053 ORTHO05D006206 2.3e-85 319.3 219 72.6
Dinv29944 Davidia involucrata HOM05D005053 ORTHO05D006206 3.0e-85 318.9 197 77.7
Nn6g32115 Nelumbo nucifera HOM05D005053 ORTHO05D006206 3.9e-85 318.5 220 70.0
Peaxi162Scf00993g00120 Petunia axillaris HOM05D005053 ORTHO05D006206 6.6e-85 317.8 192 76.6
Nn5g29376 Nelumbo nucifera HOM05D005053 ORTHO05D006206 8.6e-85 317.4 219 72.1
Aa31LG1G15480 Aethionema arabicum HOM05D005053 ORTHO05D006206 1.1e-84 317.0 219 71.7
Sp2g29730 Schrenkiella parvula HOM05D005053 ORTHO05D006206 4.3e-84 315.1 219 71.7
Ca_22228_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 1.8e-82 309.7 192 76.6
BcaB04g20086 Brassica carinata HOM05D005053 ORTHO05D006206 4.0e-82 308.5 220 70.0
PGSC0003DMG400010070 Solanum tuberosum HOM05D005053 ORTHO05D006206 1.5e-81 306.6 212 69.3
Rhsim08G0104900 Rhododendron simsii HOM05D005053 ORTHO05D006206 2.0e-81 306.2 299 55.5
Gohir.A12G069100 Gossypium hirsutum HOM05D005053 ORTHO05D006206 7.6e-81 304.3 192 76.6
ATR0225G009 Amborella trichopoda HOM05D005053 ORTHO05D006206 1.7e-80 303.1 220 68.6
Gohir.D12G090200 Gossypium hirsutum HOM05D005053 ORTHO05D006206 1.7e-80 303.1 192 75.5
TAR628G0491 Trochodendron aralioides HOM05D005053 ORTHO05D006206 2.2e-80 302.8 192 76.6
Solyc02g090330.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 4.9e-80 301.6 212 67.5
CiPaw.01G025900 Carya illinoinensis HOM05D005053 ORTHO05D006206 6.4e-80 301.2 196 75.5
Thhalv10005270m.g Eutrema salsugineum HOM05D005053 ORTHO05D006206 6.4e-80 301.2 211 70.6
QL06p043337 Quercus lobata HOM05D005053 ORTHO05D006206 8.4e-80 300.8 196 76.0
A09p09640 Brassica napus HOM05D005053 ORTHO05D006206 2.4e-79 299.3 220 68.6
Haze_15460 Corylus avellana HOM05D005053 ORTHO05D006206 4.1e-79 298.5 199 74.4
BcaC04g23174 Brassica carinata HOM05D005053 ORTHO05D006206 7.1e-79 297.7 221 67.9
C09p11390 Brassica napus HOM05D005053 ORTHO05D006206 7.1e-79 297.7 221 67.9
AUR62003832 Chenopodium quinoa HOM05D005053 ORTHO05D006206 7.1e-79 297.7 191 75.4
TWI53G1273 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 2.1e-78 296.2 194 73.2
BcaC06g34767 Brassica carinata HOM05D005053 ORTHO05D006206 4.6e-78 295.0 220 68.2
C07p24820 Brassica napus HOM05D005053 ORTHO05D006206 4.6e-78 295.0 220 68.2
BolC9t54027H Brassica oleracea HOM05D005053 ORTHO05D006206 6.0e-78 294.7 222 67.1
BraA09t36613Z Brassica rapa HOM05D005053 ORTHO05D006206 6.0e-78 294.7 220 67.3
Duzib264G0045 Durio zibethinus HOM05D005053 ORTHO05D006206 7.8e-78 294.3 192 73.4
TWI09G0689 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 1.0e-77 293.9 197 72.1
BraA07t29424Z Brassica rapa HOM05D005053 ORTHO05D006206 3.0e-77 292.4 219 66.7
Duzib264G0685 Durio zibethinus HOM05D005053 ORTHO05D006206 8.6e-77 290.8 192 72.9
SEGI_13826 Sequoiadendron giganteum HOM05D005053 ORTHO05D006206 1.1e-76 290.4 219 64.4
A07p16970 Brassica napus HOM05D005053 ORTHO05D006206 1.5e-76 290.0 219 65.8
Ah.02g124120 Amaranthus hybridus HOM05D005053 ORTHO05D006206 1.9e-76 289.7 209 68.4
BcaB02g09970 Brassica carinata HOM05D005053 ORTHO05D006206 5.6e-76 288.1 219 66.7
HPP92_024294 Vanilla planifolia HOM05D005053 ORTHO05D006206 1.2e-75 287.0 220 66.4
HPP92_024303 Vanilla planifolia HOM05D005053 ORTHO05D006206 1.2e-75 287.0 220 66.4
Duzib147G0596 Durio zibethinus HOM05D005053 ORTHO05D006206 3.6e-75 285.4 192 73.4
RhsimUnG0070600 Rhododendron simsii HOM05D005053 ORTHO05D006206 4.7e-75 285.0 288 54.2
Sabra07G0034100 Salix brachista HOM05D005053 ORTHO05D006206 2.9e-72 275.8 196 69.9
Lj7A44T18 Lonicera japonica HOM05D005053 ORTHO05D006206 1.4e-71 273.5 179 75.4
CiPaw.02G011700 Carya illinoinensis HOM05D005053 ORTHO05D006206 2.4e-71 272.7 221 65.2
BolC7t43007H Brassica oleracea HOM05D005053 ORTHO05D006206 4.2e-71 271.9 209 66.5
Mapoly0011s0084 Marchantia polymorpha HOM05D005053 ORTHO05D006206 4.2e-71 271.9 222 60.4
SMO271G0126 Selaginella moellendorffii HOM05D005053 ORTHO05D006206 9.3e-71 270.8 218 59.2
MBI16_g19902_MAGBIO Magnolia biondii HOM05D005053 ORTHO05D006206 6.6e-69 264.6 183 70.5
Nitab4.5_0002157g0070 Nicotiana tabacum HOM05D005053 ORTHO05D006206 6.6e-69 264.6 168 75.0
Dinv39902 Davidia involucrata HOM05D005053 ORTHO05D006206 1.3e-67 260.4 171 71.9
DCAR_025697 Daucus carota HOM05D005053 ORTHO05D006206 3.6e-67 258.8 169 74.0
BcaC03g18393 Brassica carinata HOM05D005053 ORTHO05D006206 9.0e-66 254.2 226 60.6
C02p64670 Brassica napus HOM05D005053 ORTHO05D006206 9.0e-66 254.2 226 60.6
Os12g0428200 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 3.4e-65 252.3 219 59.8
BolC2t12528H Brassica oleracea HOM05D005053 ORTHO05D006206 3.8e-64 248.8 221 60.6
Prupe.7G140800 Prunus persica HOM05D005053 ORTHO05D006206 3.8e-64 248.8 163 77.9
Pp3c11_5110 Physcomitrium patens HOM05D005053 ORTHO05D006206 6.7e-61 238.0 226 54.0
Zm00001eb184240 Zea mays HOM05D005053 ORTHO05D006206 1.5e-60 236.9 218 56.9
Psat4g088960 Pisum sativum HOM05D005053 ORTHO05D006206 7.4e-60 234.6 157 73.2
Ah.03g144090 Amaranthus hybridus HOM05D005053 ORTHO05D006206 8.1e-59 231.1 194 62.9
CBR_g23008 Chara braunii HOM05D005053 ORTHO05D006206 1.1e-58 230.7 221 52.5
AagrBONN_evm.TU.Sc2ySwM_344.1822 Anthoceros agrestis HOM05D005053 ORTHO05D006206 2.4e-58 229.6 222 50.9
AagrBONN_evm.TU.Sc2ySwM_344.1821 Anthoceros agrestis HOM05D005053 ORTHO05D006206 5.3e-58 228.4 194 59.3
Os12g0446700 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 2.9e-56 222.6 192 59.4
Sopen02g035010 Solanum pennellii HOM05D005053 ORTHO05D006206 1.1e-55 220.7 159 66.0
Psat4g089040 Pisum sativum HOM05D005053 ORTHO05D006206 2.7e-46 189.5 181 55.2
AagrBONN_evm.TU.Sc2ySwM_369.468 Anthoceros agrestis HOM05D000050 ORTHO05D000771 1.5e-44 183.7 218 44.5
CDE02G0556 Ceratophyllum demersum HOM05D005053 ORTHO05D006206 7.6e-41 171.4 148 56.1
TPR.G40637 Trifolium pratense HOM05D005053 ORTHO05D006206 5.0e-40 168.7 93 83.9
SGA_v2.0_scaffold15G07238 Striga asiatica HOM05D005053 ORTHO05D006206 1.0e-37 161.0 247 42.1
MCO07G250 Micromonas commoda HOM05D005053 ORTHO05D006206 1.1e-34 151.0 220 38.2
Cre07.g334700 Chlamydomonas reinhardtii HOM05D005053 ORTHO05D006206 1.2e-33 147.5 231 36.4
TPR.G672 Trifolium pratense HOM05D005053 ORTHO05D006206 5.0e-32 142.1 98 69.4
Nitab4.5_0003750g0060 Nicotiana tabacum HOM05D005053 ORTHO05D006206 6.1e-30 135.2 139 50.4
PRCOL_00006110 Prasinoderma coloniale HOM05D005053 ORTHO05D006206 9.7e-28 127.9 217 33.6
FAN19G1388 Fragaria x ananassa HOM05D005053 ORTHO05D006206 2.8e-27 126.3 84 71.4
Zm00001eb184160 Zea mays HOM05D005053 ORTHO05D006206 2.6e-25 119.8 84 65.5
AUR62028910 Chenopodium quinoa HOM05D005053 ORTHO05D006206 7.4e-20 101.7 92 56.5
Ciclev10027037m.g Citrus clementina HOM05D005053 ORTHO05D006206 2.4e-18 96.7 81 65.4
CAN.G836.41 Capsicum annuum HOM05D005053 ORTHO05D024763 6.1e-14 82.0 144 41.0
Cfa024505 Carpinus fangiana HOM05D005053 ORTHO05D124968 4.5e-09 65.9 205 23.9


User provided reference genes

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