Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G47.19 Capsicum annuum HOM05D003898 ORTHO05D004642 1.9e-179 632.5 349 100.0
Sopen12g029520 Solanum pennellii HOM05D003898 ORTHO05D004642 6.9e-161 570.9 341 86.8
PGSC0003DMG401016958 Solanum tuberosum HOM05D003898 ORTHO05D004642 2.2e-159 565.8 341 85.9
Solyc12g056840.2 Solanum lycopersicum HOM05D003898 ORTHO05D004642 1.9e-158 562.8 341 85.9
Nitab4.5_0000425g0260 Nicotiana tabacum HOM05D003898 ORTHO05D004642 5.5e-158 561.2 348 83.9
Peaxi162Scf00160g01643 Petunia axillaris HOM05D003898 ORTHO05D004642 4.4e-155 551.6 349 82.5
Nitab4.5_0006745g0040 Nicotiana tabacum HOM05D003898 ORTHO05D004642 3.4e-152 542.0 394 74.6
CAN.G617.2 Capsicum annuum HOM05D003898 ORTHO05D004642 2.5e-134 482.6 349 71.6
Sopen04g028670 Solanum pennellii HOM05D003898 ORTHO05D004642 2.7e-133 479.2 349 70.8
MSTRG.24959 Avicennia marina HOM05D003898 ORTHO05D004642 4.1e-129 465.3 344 69.2
CiPaw.06G023700 Carya illinoinensis HOM05D003898 ORTHO05D004642 7.2e-126 454.5 345 67.8
Solyc04g072480.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 7.2e-126 454.5 377 64.5
SGA_v2.0_scaffold11G05890 Striga asiatica HOM05D003898 ORTHO05D004642 1.6e-125 453.4 344 68.6
QL12p035494 Quercus lobata HOM05D003898 ORTHO05D004642 4.7e-125 451.8 347 66.9
Manes.02G157700 Manihot esculenta HOM05D003898 ORTHO05D004642 4.9e-122 441.8 331 68.6
Prupe.1G507900 Prunus persica HOM05D003898 ORTHO05D004642 8.3e-122 441.0 347 65.7
MD08G1174000 Malus domestica HOM05D003898 ORTHO05D004642 4.1e-121 438.7 347 66.0
vmacro04776 Vaccinium macrocarpon HOM05D003898 ORTHO05D004642 9.2e-121 437.6 347 66.0
Migut.C00215 Erythranthe guttata HOM05D003898 ORTHO05D004642 2.7e-120 436.0 343 67.1
RcHm_v2.0_Chr7g0240421 Rosa chinensis HOM05D003898 ORTHO05D004642 4.5e-120 435.3 347 64.3
CiPaw.05G230800 Carya illinoinensis HOM05D003898 ORTHO05D004642 5.9e-120 434.9 347 65.7
TAR625G0437 Trochodendron aralioides HOM05D003898 ORTHO05D004642 1.3e-119 433.7 346 65.0
Nitab4.5_0001307g0170 Nicotiana tabacum HOM05D003898 ORTHO05D004642 1.7e-119 433.3 343 67.9
CSS0037064 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 2.9e-119 432.6 350 65.4
CSS0048138 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 3.8e-119 432.2 349 65.0
Dinv13069 Davidia involucrata HOM05D003898 ORTHO05D004642 6.6e-119 431.4 351 65.2
Actinidia33168 Actinidia chinensis HOM05D003898 ORTHO05D004642 1.1e-118 430.6 352 65.3
Lj4C109T16 Lonicera japonica HOM05D003898 ORTHO05D004642 1.6e-117 426.8 370 63.5
COL.COLO4_16517 Corchorus olitorius HOM05D003898 ORTHO05D004642 3.6e-117 425.6 333 66.4
HanXRQChr05g0162311 Helianthus annuus HOM05D003898 ORTHO05D004642 4.7e-117 425.2 349 65.0
RcHm_v2.0_Chr1g0340891 Rosa chinensis HOM05D003898 ORTHO05D004642 4.7e-117 425.2 347 63.1
Rhsim07G0198900 Rhododendron simsii HOM05D003898 ORTHO05D004642 6.1e-117 424.9 350 64.3
Duzib093G1469 Durio zibethinus HOM05D003898 ORTHO05D004642 1.0e-116 424.1 333 67.3
ECA246G0783 Erigeron canadensis HOM05D003898 ORTHO05D004642 2.3e-116 422.9 345 64.1
FvH4_5g38420 Fragaria vesca HOM05D003898 ORTHO05D004642 2.3e-116 422.9 347 62.8
Cpa.g.sc49.114 Carica papaya HOM05D003898 ORTHO05D004642 3.0e-116 422.5 343 63.0
CANSAT25G0948 Cannabis sativa HOM05D003898 ORTHO05D004642 5.2e-116 421.8 344 64.8
Potri.002G090500 Populus trichocarpa HOM05D003898 ORTHO05D004642 5.2e-116 421.8 331 66.2
Thecc.08G115200 Theobroma cacao HOM05D003898 ORTHO05D004642 5.2e-116 421.8 327 67.0
Ca_02530_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 1.5e-115 420.2 346 62.7
PGR044G1262 Punica granatum HOM05D003898 ORTHO05D004642 2.0e-115 419.9 330 65.2
HanXRQChr01g0001161 Helianthus annuus HOM05D003898 ORTHO05D004642 3.4e-115 419.1 349 63.6
PSO447G0107 Papaver somniferum HOM05D003898 ORTHO05D004642 5.7e-115 418.3 347 63.1
PSO210G6710 Papaver somniferum HOM05D003898 ORTHO05D004642 1.7e-114 416.8 347 63.4
Aqoxy2G00480 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 2.2e-114 416.4 347 61.7
Potri.005G170600 Populus trichocarpa HOM05D003898 ORTHO05D004642 2.2e-114 416.4 348 64.4
Cc10_g06070 Coffea canephora HOM05D003898 ORTHO05D004642 4.9e-114 415.2 274 76.6
TWI12G0005 Tripterygium wilfordii HOM05D003898 ORTHO05D004642 4.9e-114 415.2 347 62.8
Cfa015947 Carpinus fangiana HOM05D003898 ORTHO05D004642 8.3e-114 414.5 274 75.5
Medtr4g112080 Medicago truncatula HOM05D003898 ORTHO05D004642 2.4e-113 412.9 340 62.4
GSVIVG01008958001 Vitis vinifera HOM05D003898 ORTHO05D004642 3.2e-113 412.5 328 64.6
Sc16g0001430 Simmondsia chinensis HOM05D003898 ORTHO05D004642 7.0e-113 411.4 332 63.3
TPR.G26798 Trifolium pratense HOM05D003898 ORTHO05D004642 7.0e-113 411.4 346 61.6
ClCG08G010840 Citrullus lanatus HOM05D003898 ORTHO05D004642 1.2e-112 410.6 343 61.8
Haze_00543 Corylus avellana HOM05D003898 ORTHO05D004642 1.2e-112 410.6 373 59.8
Psat5g107440 Pisum sativum HOM05D003898 ORTHO05D004642 1.2e-112 410.6 346 61.0
THA.LOC104813137 Tarenaya hassleriana HOM05D003898 ORTHO05D004642 1.2e-112 410.6 348 61.8
FAN13G1941 Fragaria x ananassa HOM05D003898 ORTHO05D004642 2.7e-112 409.5 363 60.3
FvH4_7g08221 Fragaria vesca HOM05D003898 ORTHO05D004642 4.6e-112 408.7 336 63.1
Gohir.D01G182400 Gossypium hirsutum HOM05D003898 ORTHO05D004642 5.9e-112 408.3 327 66.1
Gorai.002G220000 Gossypium raimondii HOM05D003898 ORTHO05D004642 5.9e-112 408.3 327 66.1
DCAR_028260 Daucus carota HOM05D003898 ORTHO05D004642 1.7e-111 406.8 335 65.1
Oeu038191.1 Olea europaea HOM05D003898 ORTHO05D004642 1.7e-111 406.8 331 65.6
Gohir.A01G187300 Gossypium hirsutum HOM05D003898 ORTHO05D004642 2.3e-111 406.4 327 65.7
Lsat_1_v5_gn_9_70200 Lactuca sativa HOM05D003898 ORTHO05D004642 2.3e-111 406.4 325 66.2
Lj1g0002951 Lotus japonicus HOM05D003898 ORTHO05D004642 2.3e-111 406.4 347 61.1
Glyma.06G107500 Glycine max HOM05D003898 ORTHO05D004642 8.6e-111 404.4 347 59.9
VMungo1309G1855 Vigna mungo HOM05D003898 ORTHO05D004642 1.5e-110 403.7 345 60.0
Ciclev10005436m.g Citrus clementina HOM05D003898 ORTHO05D004642 2.5e-110 402.9 333 64.3
Sabra02G0071500 Salix brachista HOM05D003898 ORTHO05D004642 5.6e-110 401.7 362 60.5
TPR.G32957 Trifolium pratense HOM05D003898 ORTHO05D004642 5.6e-110 401.7 343 60.1
MELO3C011378.2 Cucumis melo HOM05D003898 ORTHO05D004642 7.3e-110 401.4 344 60.5
Glyma.04G254600 Glycine max HOM05D003898 ORTHO05D004642 3.6e-109 399.1 347 59.7
Lalb_Chr11g0065591 Lupinus albus HOM05D003898 ORTHO05D004642 3.6e-109 399.1 346 60.1
Lalb_Chr08g0241771 Lupinus albus HOM05D003898 ORTHO05D004642 4.7e-109 398.7 346 59.8
Solyc10g011840.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 4.7e-109 398.7 355 60.6
Phvul.009G026700 Phaseolus vulgaris HOM05D003898 ORTHO05D004642 8.0e-109 397.9 345 59.4
FAN08G2468 Fragaria x ananassa HOM05D003898 ORTHO05D004642 5.2e-108 395.2 368 57.3
Lsat_1_v5_gn_6_68860 Lactuca sativa HOM05D003898 ORTHO05D004642 5.2e-108 395.2 273 74.0
CsaV3_6G035700 Cucumis sativus L. HOM05D003898 ORTHO05D004642 6.8e-108 394.8 345 61.2
TAR381G1034 Trochodendron aralioides HOM05D003898 ORTHO05D004642 8.9e-108 394.4 275 71.3
EL10Ac6g15432 Beta vulgaris HOM05D003898 ORTHO05D004642 1.5e-107 393.7 338 60.7
CDE10G0849 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 5.8e-107 391.7 343 61.2
Medtr3g073550 Medicago truncatula HOM05D003898 ORTHO05D004642 1.3e-106 390.6 346 58.1
Carub.0001s1201 Capsella rubella HOM05D003898 ORTHO05D004642 2.2e-106 389.8 332 59.9
A10p33510 Brassica napus HOM05D003898 ORTHO05D004642 2.9e-106 389.4 333 60.1
Sed0026073 Sechium edule HOM05D003898 ORTHO05D004642 2.9e-106 389.4 338 60.1
Thhalv10014147m.g Eutrema salsugineum HOM05D003898 ORTHO05D004642 1.9e-105 386.7 330 60.6
CARHR012640 Cardamine hirsuta HOM05D003898 ORTHO05D004642 3.2e-105 386.0 330 60.9
Sp6g40350 Schrenkiella parvula HOM05D003898 ORTHO05D004642 5.4e-105 385.2 330 61.5
Aa31LG9G14440 Aethionema arabicum HOM05D003898 ORTHO05D004642 2.7e-104 382.9 274 69.3
C09p74420 Brassica napus HOM05D003898 ORTHO05D004642 2.7e-104 382.9 330 59.7
AUR62019012 Chenopodium quinoa HOM05D003898 ORTHO05D004642 1.3e-103 380.6 327 61.8
BraA02t04709Z Brassica rapa HOM05D003898 ORTHO05D004642 1.7e-103 380.2 334 59.6
BcaNung04450 Brassica carinata HOM05D003898 ORTHO05D004642 2.3e-103 379.8 330 60.0
BolC9t60175H Brassica oleracea HOM05D003898 ORTHO05D004642 8.6e-103 377.9 330 59.7
arahy.Tifrunner.gnm1.ann1.PF76WK Arachis hypogaea HOM05D003898 ORTHO05D004642 1.9e-102 376.7 275 68.0
CANSAT01G0632 Cannabis sativa HOM05D003898 ORTHO05D004642 3.3e-102 375.9 331 62.8
AUR62027853 Chenopodium quinoa HOM05D003898 ORTHO05D004642 5.6e-102 375.2 340 60.0
arahy.Tifrunner.gnm1.ann1.HG05DD Arachis hypogaea HOM05D003898 ORTHO05D004642 1.2e-101 374.0 274 67.2
BraA10t45381Z Brassica rapa HOM05D003898 ORTHO05D004642 1.6e-101 373.6 359 55.7
SalBow7G2097 Salvia bowleyana HOM05D003898 ORTHO05D004642 4.7e-101 372.1 347 59.4
AT1G12350 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 6.2e-101 371.7 330 59.4
C02p00370 Brassica napus HOM05D003898 ORTHO05D004642 1.8e-100 370.2 327 58.7
FAN01G1002 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.8e-100 370.2 349 59.0
arahy.Tifrunner.gnm1.ann1.Z23D3B Arachis hypogaea HOM05D003898 ORTHO05D004642 2.3e-100 369.8 284 66.2
arahy.Tifrunner.gnm1.ann1.K1QIEY Arachis hypogaea HOM05D003898 ORTHO05D004642 3.1e-100 369.4 391 52.9
BcaNung06026 Brassica carinata HOM05D003898 ORTHO05D004642 3.4e-99 365.9 327 59.0
AL1G23670 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 2.2e-98 363.2 330 58.2
Os02g0575200 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 1.9e-97 360.1 325 58.8
Pp3c11_3000 Physcomitrium patens HOM05D003898 ORTHO05D004642 3.2e-97 359.4 330 56.1
Zm00001eb182920 Zea mays HOM05D003898 ORTHO05D004642 3.5e-96 355.9 326 58.0
HPP92_006004 Vanilla planifolia HOM05D003898 ORTHO05D004642 3.9e-95 352.4 346 56.6
Os08g0176100 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 8.6e-95 351.3 336 56.0
SEGI_30417 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 1.6e-93 347.1 324 57.4
RcHm_v2.0_Chr1g0340911 Rosa chinensis HOM05D003898 ORTHO05D004642 8.9e-92 341.3 289 60.9
CSS0031031 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 7.6e-91 338.2 349 54.2
Mapoly0004s0284 Marchantia polymorpha HOM05D003898 ORTHO05D004642 2.2e-90 336.7 323 54.2
Zm00001eb414730 Zea mays HOM05D003898 ORTHO05D004642 2.4e-89 333.2 326 55.2
Nn1g05207 Nelumbo nucifera HOM05D003898 ORTHO05D004642 2.1e-88 330.1 270 61.1
FvH4_5g38402 Fragaria vesca HOM05D003898 ORTHO05D004642 6.0e-88 328.6 270 61.1
MD15G1360400 Malus domestica HOM05D003898 ORTHO05D004642 3.1e-84 316.2 229 70.3
Duzib116G0208 Durio zibethinus HOM05D003898 ORTHO05D004642 3.0e-79 299.7 333 53.2
FAN06G3434 Fragaria x ananassa HOM05D000001 ORTHO05D000003 8.7e-79 298.1 346 49.4
SalBow1G7967 Salvia bowleyana HOM05D003898 ORTHO05D004642 7.3e-78 295.0 336 51.5
PGSC0003DMG400027542 Solanum tuberosum HOM05D003898 ORTHO05D004642 7.3e-78 295.0 192 80.2
ATR0564G227 Amborella trichopoda HOM05D003898 ORTHO05D004642 1.3e-77 294.3 232 64.2
ClCG08G002640 Citrullus lanatus HOM05D003898 ORTHO05D004642 3.9e-71 272.7 475 40.2
AL6G11300 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 4.8e-69 265.8 186 69.4
Sopen10g005660 Solanum pennellii HOM05D003898 ORTHO05D004642 4.0e-68 262.7 221 62.9
SMO137G0130 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 1.7e-66 257.3 331 45.0
Nitab4.5_0000553g0060 Nicotiana tabacum HOM05D003898 ORTHO05D004642 8.4e-66 255.0 270 54.8
Atru.chr13.1300 Acer truncatum HOM05D003898 ORTHO05D004642 3.5e-64 249.6 172 76.7
FAN04G1035 Fragaria x ananassa HOM05D003898 ORTHO05D004642 1.5e-62 244.2 208 62.5
AT5G02080 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 1.4e-60 237.7 186 65.6
SMO137G0020 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 2.0e-59 233.8 273 49.5
DCAR_027594 Daucus carota HOM05D003898 ORTHO05D004642 2.2e-58 230.3 214 59.3
PRCOL_00003493 Prasinoderma coloniale HOM05D003898 ORTHO05D004642 6.5e-58 228.8 328 43.0
Dinv44720 Davidia involucrata HOM05D003898 ORTHO05D004642 1.9e-57 227.3 201 60.2
BolC2t06037H Brassica oleracea HOM05D003898 ORTHO05D004642 3.2e-57 226.5 214 59.3
CDE10G0276 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 3.2e-57 226.5 158 69.6
Psat4g046560 Pisum sativum HOM05D003898 ORTHO05D011365 3.5e-56 223.0 171 68.4
Cre01.g048050 Chlamydomonas reinhardtii HOM05D003898 ORTHO05D004642 1.1e-54 218.0 263 46.8
AagrBONN_evm.TU.Sc2ySwM_344.1574 Anthoceros agrestis HOM05D003898 ORTHO05D004642 1.9e-54 217.2 226 53.1
MCO09G707 Micromonas commoda HOM05D003898 ORTHO05D004642 1.8e-52 210.7 284 44.4
Eucgr.F04382 Eucalyptus grandis HOM05D003898 ORTHO05D004642 1.2e-51 208.0 148 71.6
unitig_32.g11143 Utricularia gibba HOM05D003898 ORTHO05D004642 7.2e-49 198.7 132 75.8
Lj4C710T9 Lonicera japonica HOM05D003898 ORTHO05D004642 2.1e-48 197.2 139 74.1
SMO137G0337 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 2.1e-48 197.2 227 48.0
Ca_25770_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 5.1e-47 192.6 151 65.6
FAN18G1940 Fragaria x ananassa HOM05D003898 ORTHO05D004642 5.1e-47 192.6 196 55.1
Cfa024377 Carpinus fangiana HOM05D003898 ORTHO05D004642 2.9e-42 176.8 268 44.4
Atru.chr13.1301 Acer truncatum HOM05D003898 ORTHO05D004642 3.9e-39 166.4 162 52.5
SEGI_10597 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 7.4e-38 162.2 148 59.5
Atru.chr4.493 Acer truncatum HOM05D003898 ORTHO05D004642 1.5e-35 154.5 141 54.6
Atru.chr1.2069 Acer truncatum HOM05D003898 ORTHO05D004642 2.0e-35 154.1 140 55.0
CBR_g9000 Chara braunii HOM05D003898 ORTHO05D004642 1.6e-32 144.4 188 40.4
arahy.Tifrunner.gnm1.ann1.Z5SK82 Arachis hypogaea HOM05D003898 ORTHO05D004642 1.5e-30 137.9 182 44.5
Duzib041G0680 Durio zibethinus HOM05D003898 ORTHO05D004642 6.3e-29 132.5 106 66.0
CBR_g9001 Chara braunii HOM05D003898 ORTHO05D004642 5.0e-26 122.9 113 57.5
unitig_32.g11144 Utricularia gibba HOM05D003898 ORTHO05D004642 5.0e-26 122.9 116 61.2
arahy.Tifrunner.gnm1.ann1.N7W281 Arachis hypogaea HOM05D003898 ORTHO05D004642 1.2e-24 118.2 144 47.9
Aqoxy480s002 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 4.1e-20 103.2 146 41.1
QL10p044069 Quercus lobata HOM05D003898 ORTHO05D004642 1.7e-18 97.8 83 61.4
arahy.Tifrunner.gnm1.ann1.9J7JQ6 Arachis hypogaea HOM05D003898 ORTHO05D004642 2.9e-18 97.1 66 69.7
QL02p062685 Quercus lobata HOM05D003898 ORTHO05D004642 7.2e-17 92.4 83 61.4
Peaxi162Scf00756g00110 Petunia axillaris HOM05D003898 ORTHO05D004642 1.8e-15 87.8 90 51.1
QL10p009819 Quercus lobata HOM05D003898 ORTHO05D004642 6.3e-13 79.3 65 63.1
Ah.05g170600 Amaranthus hybridus HOM05D003898 ORTHO05D004642 2.4e-12 77.4 85 49.4
Aqoxy5G01116 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 3.1e-12 77.0 46 78.3
arahy.Tifrunner.gnm1.ann1.KW4E90 Arachis hypogaea HOM05D003898 ORTHO05D004642 4.1e-12 76.6 97 44.3
QL08p011560 Quercus lobata HOM05D003898 ORTHO05D004642 4.1e-12 76.6 65 63.1


User provided reference genes

Program Settings