Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G468.2 Capsicum annuum HOM05D002956 ORTHO05D008031 6.5e-99 364.0 175 100.0
Sopen11g024800 Solanum pennellii HOM05D002956 ORTHO05D008031 8.5e-51 204.1 138 74.6
Nitab4.5_0007012g0050 Nicotiana tabacum HOM05D002956 ORTHO05D008031 1.4e-40 170.2 127 70.1
PGSC0003DMG400031243 Solanum tuberosum HOM05D002956 ORTHO05D008031 2.3e-40 169.5 115 73.0
Solyc11g065040.2 Solanum lycopersicum HOM05D002956 ORTHO05D008031 2.9e-38 162.5 120 70.0
Lsat_1_v5_gn_5_63100 Lactuca sativa HOM05D002956 ORTHO05D008031 1.0e-35 154.1 144 59.0
Peaxi162Scf00004g04220 Petunia axillaris HOM05D002956 ORTHO05D008031 5.0e-35 151.8 112 70.5
ECA233G6038 Erigeron canadensis HOM05D002956 ORTHO05D008031 8.6e-35 151.0 128 60.9
Dinv36148 Davidia involucrata HOM05D002956 ORTHO05D008031 1.1e-34 150.6 128 62.5
Thecc.09G246000 Theobroma cacao HOM05D002956 ORTHO05D008031 1.5e-34 150.2 128 57.8
SGA_v2.0_scaffold26G11398 Striga asiatica HOM05D002956 ORTHO05D008031 1.9e-34 149.8 126 61.1
Gorai.001G135400 Gossypium raimondii HOM05D002956 ORTHO05D008031 2.5e-34 149.4 128 58.6
Oeu061696.1 Olea europaea HOM05D002956 ORTHO05D008031 3.3e-34 149.1 151 57.0
MSTRG.12436 Avicennia marina HOM05D002956 ORTHO05D008031 1.2e-33 147.1 122 63.1
Gohir.A07G121300 Gossypium hirsutum HOM05D002956 ORTHO05D008031 2.8e-33 146.0 129 57.4
Gohir.D07G125600 Gossypium hirsutum HOM05D002956 ORTHO05D008031 3.6e-33 145.6 129 57.4
COL.COLO4_07384 Corchorus olitorius HOM05D002956 ORTHO05D008031 4.7e-33 145.2 125 58.4
Potri.009G068400 Populus trichocarpa HOM05D002956 ORTHO05D008031 1.0e-32 144.1 129 58.1
FAN11G2127 Fragaria x ananassa HOM05D002956 ORTHO05D008031 3.1e-32 142.5 123 58.5
Sabra09G0051500 Salix brachista HOM05D002956 ORTHO05D008031 3.1e-32 142.5 125 58.4
CiPaw.14G111000 Carya illinoinensis HOM05D002956 ORTHO05D008031 4.0e-32 142.1 134 56.7
Prupe.4G260400 Prunus persica HOM05D002956 ORTHO05D008031 4.0e-32 142.1 124 57.3
HanXRQChr12g0380421 Helianthus annuus HOM05D002956 ORTHO05D008031 5.2e-32 141.7 128 57.8
QL01p016670 Quercus lobata HOM05D002956 ORTHO05D008031 1.2e-31 140.6 121 62.0
TAR369G0726 Trochodendron aralioides HOM05D002956 ORTHO05D008031 2.0e-31 139.8 125 59.2
MD00G1134600 Malus domestica HOM05D002956 ORTHO05D008031 1.7e-30 136.7 123 57.7
Ah.06g194770 Amaranthus hybridus HOM05D002956 ORTHO05D008031 2.2e-30 136.3 124 58.9
DCAR_006894 Daucus carota HOM05D002956 ORTHO05D008031 2.9e-30 136.0 127 57.5
Lalb_Chr15g0078511 Lupinus albus HOM05D002956 ORTHO05D008031 2.9e-30 136.0 135 54.1
arahy.Tifrunner.gnm1.ann1.XLU01S Arachis hypogaea HOM05D002956 ORTHO05D008031 4.9e-30 135.2 130 56.2
Hund07424 Selenicereus undatus HOM05D002956 ORTHO05D008031 6.4e-30 134.8 123 56.9
BcaB01g03033 Brassica carinata HOM05D002956 ORTHO05D008031 8.3e-30 134.4 138 52.9
Sc06g0004740 Simmondsia chinensis HOM05D002956 ORTHO05D008031 8.3e-30 134.4 125 57.6
FvH4_3g28160 Fragaria vesca HOM05D002956 ORTHO05D008031 1.1e-29 134.0 136 53.7
Nn7g36838 Nelumbo nucifera HOM05D002956 ORTHO05D008031 1.1e-29 134.0 129 54.3
CARHR118990 Cardamine hirsuta HOM05D002956 ORTHO05D008031 7.0e-29 131.3 123 56.1
Manes.02G137300 Manihot esculenta HOM05D002956 ORTHO05D008031 7.0e-29 131.3 129 54.3
PSO339G2954 Papaver somniferum HOM05D002956 ORTHO05D008031 9.2e-29 131.0 129 51.2
GSVIVG01037341001 Vitis vinifera HOM05D002956 ORTHO05D008031 9.2e-29 131.0 137 53.3
CSS0006448 Camellia sinensis var. sinensis HOM05D002956 ORTHO05D008031 1.2e-28 130.6 125 56.0
Eucgr.J00675 Eucalyptus grandis HOM05D002956 ORTHO05D008031 1.6e-28 130.2 124 54.8
Glyma.08G154800 Glycine max HOM05D002956 ORTHO05D008031 1.6e-28 130.2 130 53.8
TWI31G0384 Tripterygium wilfordii HOM05D002956 ORTHO05D008031 1.6e-28 130.2 129 55.8
Rhsim13G0206100 Rhododendron simsii HOM05D002956 ORTHO05D008031 2.0e-28 129.8 125 56.8
AT2G26810 Arabidopsis thaliana HOM05D002956 ORTHO05D008031 2.7e-28 129.4 123 55.3
AL4G20000 Arabidopsis lyrata HOM05D002956 ORTHO05D008031 3.5e-28 129.0 123 55.3
EL10Ac4g10091 Beta vulgaris HOM05D002956 ORTHO05D008031 3.5e-28 129.0 121 57.9
Sp4g08660 Schrenkiella parvula HOM05D002956 ORTHO05D008031 3.5e-28 129.0 129 53.5
Thhalv10002083m.g Eutrema salsugineum HOM05D002956 ORTHO05D008031 6.0e-28 128.3 125 53.6
A03p26830 Brassica napus HOM05D002956 ORTHO05D008031 7.8e-28 127.9 123 55.3
C03p32170 Brassica napus HOM05D002956 ORTHO05D008031 7.8e-28 127.9 123 55.3
BraA03t11895Z Brassica rapa HOM05D002956 ORTHO05D008031 7.8e-28 127.9 123 55.3
Ca_25980_v3 Cicer arietinum L. HOM05D002956 ORTHO05D008031 7.8e-28 127.9 124 55.6
Aqoxy2G00442 Aquilegia oxysepala HOM05D002956 ORTHO05D008031 1.3e-27 127.1 124 52.4
BolC3t15559H Brassica oleracea HOM05D002956 ORTHO05D008031 1.3e-27 127.1 123 55.3
Medtr3g045720 Medicago truncatula HOM05D002956 ORTHO05D008031 1.3e-27 127.1 126 54.0
PGR119G0612 Punica granatum HOM05D002956 ORTHO05D008031 1.3e-27 127.1 123 56.9
BcaC01g04913 Brassica carinata HOM05D002956 ORTHO05D008031 1.7e-27 126.7 123 55.3
Cc01_g06320 Coffea canephora HOM05D002956 ORTHO05D008031 1.7e-27 126.7 117 58.1
Phvul.005G020600 Phaseolus vulgaris HOM05D002956 ORTHO05D008031 1.7e-27 126.7 130 53.8
TPR.G11875 Trifolium pratense HOM05D002757 ORTHO05D008031 1.7e-27 126.7 126 54.0
Carub.0004s0727 Capsella rubella HOM05D002956 ORTHO05D008031 2.3e-27 126.3 123 55.3
Sed0014482 Sechium edule HOM05D002956 ORTHO05D008031 5.0e-27 125.2 125 52.0
Duzib150G0193 Durio zibethinus HOM05D002956 ORTHO05D008031 6.6e-27 124.8 131 52.7
SEGI_28475 Sequoiadendron giganteum HOM05D002956 ORTHO05D008031 6.6e-27 124.8 124 54.0
Nitab4.5_0004018g0060 Nicotiana tabacum HOM05D002956 ORTHO05D008031 8.6e-27 124.4 105 63.8
Actinidia06980 Actinidia chinensis HOM05D002956 ORTHO05D008031 1.1e-26 124.0 118 55.1
Lj6g0022582 Lotus japonicus HOM05D002956 ORTHO05D008031 1.5e-26 123.6 124 53.2
MBI19_g19211_MAGBIO Magnolia biondii HOM05D002956 ORTHO05D008031 1.5e-26 123.6 128 53.1
THA.LOC104826460 Tarenaya hassleriana HOM05D002956 ORTHO05D008031 1.5e-26 123.6 129 52.7
Haze_23261 Corylus avellana HOM05D002956 ORTHO05D008031 4.3e-26 122.1 118 55.9
CANSAT54G1478 Cannabis sativa HOM05D002956 ORTHO05D008031 5.6e-26 121.7 129 51.2
AUR62000217 Chenopodium quinoa HOM05D002956 ORTHO05D008031 2.8e-25 119.4 117 57.3
ClCG02G022710 Citrullus lanatus HOM05D002956 ORTHO05D008031 2.8e-25 119.4 134 48.5
ATR0307G044 Amborella trichopoda HOM05D002956 ORTHO05D008031 4.7e-25 118.6 159 44.0
arahy.Tifrunner.gnm1.ann1.1Z9FJQ Arachis hypogaea HOM05D002956 ORTHO05D008031 1.1e-24 117.5 122 54.1
VMungo1080G1429 Vigna mungo HOM05D002956 ORTHO05D008031 1.8e-24 116.7 116 55.2
FAN16G1792 Fragaria x ananassa HOM05D002956 ORTHO05D008031 1.5e-23 113.6 114 52.6
Cpa.g.sc34.183 Carica papaya HOM05D002956 ORTHO05D008031 1.3e-22 110.5 113 52.2
AUR62006562 Chenopodium quinoa HOM05D002956 ORTHO05D008031 1.3e-22 110.5 150 46.0
AagrBONN_evm.TU.Sc2ySwM_228.3973 Anthoceros agrestis HOM05D002956 ORTHO05D008031 1.7e-22 110.2 128 42.2
Pp3c3_3430 Physcomitrium patens HOM05D002956 ORTHO05D008031 2.4e-21 106.3 137 43.1
Os07g0641600 Oryza sativa ssp. japonica HOM05D002956 ORTHO05D008031 4.1e-21 105.5 124 46.0
PSO384G3941 Papaver somniferum HOM05D002956 ORTHO05D008031 5.4e-21 105.1 114 49.1
Ciclev10018203m.g Citrus clementina HOM05D002956 ORTHO05D008031 9.2e-21 104.4 111 49.5
CAN.G1049.9 Capsicum annuum HOM05D002956 ORTHO05D008031 7.8e-20 101.3 93 61.3
FAN25G3179 Fragaria x ananassa HOM05D002956 ORTHO05D008031 1.5e-18 97.1 100 52.0
Psat5g191880 Pisum sativum HOM05D002956 ORTHO05D008031 1.5e-18 97.1 103 51.5
FAN25G0087 Fragaria x ananassa HOM05D002956 ORTHO05D008031 1.9e-18 96.7 96 54.2
Zm00001eb329010 Zea mays HOM05D002956 ORTHO05D008031 4.3e-18 95.5 103 47.6
Aa31LG5G8970 Aethionema arabicum HOM05D002956 ORTHO05D008031 1.4e-16 90.5 115 44.3
Mapoly0001s0305 Marchantia polymorpha HOM05D002956 ORTHO05D008031 4.0e-16 89.0 131 36.6
Psat4g060320 Pisum sativum HOM05D002956 ORTHO05D008031 7.6e-15 84.7 107 44.9
Peaxi162Scf00080g00812 Petunia axillaris HOM05D002956 ORTHO05D008031 2.9e-14 82.8 62 66.1
Lj2C795T0 Lonicera japonica HOM05D002956 ORTHO05D008031 7.1e-13 78.2 68 58.8
RcHm_v2.0_Chr5g0050251 Rosa chinensis HOM05D002956 ORTHO05D008031 7.1e-13 78.2 42 81.0
FAN21G3062 Fragaria x ananassa HOM05D002956 ORTHO05D008031 2.7e-12 76.3 41 80.5
CDE04G0360 Ceratophyllum demersum HOM05D002956 ORTHO05D008031 3.5e-12 75.9 79 53.2
MELO3C014548.2 Cucumis melo HOM05D002956 ORTHO05D008031 1.3e-11 73.9 42 73.8
Migut.N02382 Erythranthe guttata HOM05D002956 ORTHO05D008031 2.3e-11 73.2 42 76.2
vmacro04047 Vaccinium macrocarpon HOM05D002956 ORTHO05D008031 2.3e-11 73.2 57 64.9
Atru.chr3.3008 Acer truncatum HOM05D002956 ORTHO05D008031 3.0e-11 72.8 56 60.7
SEGI_15484 Sequoiadendron giganteum HOM05D002956 ORTHO05D008031 5.1e-11 72.0 72 48.6
HPP92_001025 Vanilla planifolia HOM05D002956 ORTHO05D008031 5.1e-11 72.0 42 76.2
MELO3C020642.2 Cucumis melo HOM05D002956 ORTHO05D008031 1.2e-09 67.4 56 58.9
arahy.Tifrunner.gnm1.ann1.ZYB4F6 Arachis hypogaea HOM05D001920 ORTHO05D004895 2.8e-09 66.2 129 28.7
vmacro04048 Vaccinium macrocarpon HOM05D002956 ORTHO05D008031 2.8e-09 66.2 45 64.4
arahy.Tifrunner.gnm1.ann1.Z4JLGK Arachis hypogaea HOM05D001920 ORTHO05D004895 3.6e-09 65.9 172 28.5
CBR_g39846 Chara braunii HOM05D002956 ORTHO05D008031 1.4e-08 63.9 80 40.0
SHI18719 Sapria himalayana HOM05D001920 ORTHO05D004895 1.4e-08 63.9 123 30.9
Zm00001eb110260 Zea mays HOM05D002956 ORTHO05D008031 1.4e-08 63.9 93 39.8
Ca_13119_v3 Cicer arietinum L. HOM05D001920 ORTHO05D004895 1.8e-08 63.5 120 29.2
PSO210G7567 Papaver somniferum HOM05D001920 ORTHO05D004895 3.1e-08 62.8 123 27.6
ATR0716G012 Amborella trichopoda HOM05D001920 ORTHO05D004895 4.0e-08 62.4 122 29.5
Psat4g143640 Pisum sativum HOM05D002956 ORTHO05D008031 4.0e-08 62.4 101 42.6
TPR.G13113 Trifolium pratense HOM05D001920 ORTHO05D004895 5.2e-08 62.0 120 30.0
SalBow4G0898 Salvia bowleyana HOM05D001920 ORTHO05D004895 6.8e-08 61.6 129 28.7
CANSAT25G1922 Cannabis sativa HOM05D001920 ORTHO05D004895 8.9e-08 61.2 129 27.1
SMO270G0089 Selaginella moellendorffii HOM05D055329 ORTHO05D008031 1.2e-07 60.8 54 51.9
Thecc.09G057600 Theobroma cacao HOM05D001920 ORTHO05D004895 1.2e-07 60.8 129 31.0
Medtr1g015770 Medicago truncatula HOM05D001920 ORTHO05D004895 1.5e-07 60.5 120 29.2
PSO210G1339 Papaver somniferum HOM05D001920 ORTHO05D004895 1.5e-07 60.5 123 27.6
Lsat_1_v5_gn_4_71781 Lactuca sativa HOM05D001920 ORTHO05D004895 2.6e-07 59.7 126 28.6
Dinv04583 Davidia involucrata HOM05D002956 ORTHO05D008031 3.4e-07 59.3 40 67.5
Lalb_Chr14g0366411 Lupinus albus HOM05D001920 ORTHO05D004895 3.4e-07 59.3 129 27.1
Lj7C264T3 Lonicera japonica HOM05D001920 ORTHO05D004895 4.4e-07 58.9 120 32.5
Nitab4.5_0003458g0040 Nicotiana tabacum HOM05D001920 ORTHO05D004895 4.4e-07 58.9 129 27.9
Nitab4.5_0003730g0040 Nicotiana tabacum HOM05D001920 ORTHO05D004895 4.4e-07 58.9 129 27.1
Lj7C259G6 Lonicera japonica HOM05D001920 ORTHO05D004895 7.6e-07 58.2 115 31.3
Ah.10g034110 Amaranthus hybridus HOM05D001920 ORTHO05D004895 9.9e-07 57.8 129 27.9
Cc08_g10920 Coffea canephora HOM05D001920 ORTHO05D004895 9.9e-07 57.8 129 25.6
MELO3C016884.2 Cucumis melo HOM05D001920 ORTHO05D004895 9.9e-07 57.8 120 28.3
CsaV3_4G035790 Cucumis sativus L. HOM05D001920 ORTHO05D004895 9.9e-07 57.8 120 29.2
Prupe.1G408900 Prunus persica HOM05D001920 ORTHO05D004895 9.9e-07 57.8 120 27.5
Glyma.17G226800 Glycine max HOM05D001920 ORTHO05D004895 2.2e-06 56.6 116 29.3
TAR626G1466 Trochodendron aralioides HOM05D001920 ORTHO05D004895 2.2e-06 56.6 129 27.9
Cfa017979 Carpinus fangiana HOM05D001920 ORTHO05D005408 2.9e-06 56.2 127 29.1
Glyma.14G097800 Glycine max HOM05D001920 ORTHO05D004895 2.9e-06 56.2 116 31.0
Gohir.D06G085100 Gossypium hirsutum HOM05D001920 ORTHO05D004895 2.9e-06 56.2 120 29.2
Gorai.010G098400 Gossypium raimondii HOM05D001920 ORTHO05D004895 2.9e-06 56.2 120 29.2
TWI32G0956 Tripterygium wilfordii HOM05D001920 ORTHO05D004895 2.9e-06 56.2 129 26.4
Sopen08g018250 Solanum pennellii HOM05D001920 ORTHO05D004895 3.8e-06 55.8 129 27.1
VMungo0647G0099 Vigna mungo HOM05D001920 ORTHO05D004895 3.8e-06 55.8 125 29.6
Duzib168G0495 Durio zibethinus HOM05D001920 ORTHO05D004895 4.9e-06 55.5 129 28.7
Peaxi162Scf00070g00315 Petunia axillaris HOM05D001920 ORTHO05D004895 4.9e-06 55.5 129 25.6
SEGI_34471 Sequoiadendron giganteum HOM05D001920 ORTHO05D004895 4.9e-06 55.5 134 28.4
MSTRG.11648 Avicennia marina HOM05D001920 ORTHO05D004895 6.4e-06 55.1 131 26.7
Ciclev10007880m.g Citrus clementina HOM05D001920 ORTHO05D004895 6.4e-06 55.1 124 29.0


User provided reference genes

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