Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G466.13 Capsicum annuum HOM05D000516 ORTHO05D000409 2.1e-43 178.7 97 100.0
Nitab4.5_0009616g0010 Nicotiana tabacum HOM05D000516 ORTHO05D000409 2.1e-27 125.6 102 71.6
Nitab4.5_0000242g0160 Nicotiana tabacum HOM05D000516 ORTHO05D000409 2.0e-25 119.0 101 69.3
Peaxi162Scf00184g00416 Petunia axillaris HOM05D000516 ORTHO05D000409 3.4e-25 118.2 96 68.8
Peaxi162Scf00141g00214 Petunia axillaris HOM05D000516 ORTHO05D000409 2.4e-23 112.1 95 67.4
CSS0010115 Camellia sinensis var. sinensis HOM05D000516 ORTHO05D000409 1.2e-22 109.8 101 64.4
CSS0047133 Camellia sinensis var. sinensis HOM05D000516 ORTHO05D000409 1.6e-22 109.4 100 64.0
CAN.G136.21 Capsicum annuum HOM05D000516 ORTHO05D000409 7.9e-22 107.1 103 64.1
ClCG05G007200 Citrullus lanatus HOM05D000516 ORTHO05D000409 7.9e-22 107.1 96 61.5
Cc00_g03570 Coffea canephora HOM05D000516 ORTHO05D000409 7.9e-22 107.1 108 59.3
CsaV3_3G015960 Cucumis sativus L. HOM05D000516 ORTHO05D000409 1.0e-21 106.7 96 61.5
Solyc06g053350.3 Solanum lycopersicum HOM05D000516 ORTHO05D000409 2.3e-21 105.5 101 63.4
CSS0040362 Camellia sinensis var. sinensis HOM05D000516 ORTHO05D000409 3.0e-21 105.1 101 61.4
MELO3C006784.2 Cucumis melo HOM05D000516 ORTHO05D000409 3.0e-21 105.1 105 60.0
Sopen06g018410 Solanum pennellii HOM05D000516 ORTHO05D000409 3.0e-21 105.1 101 63.4
CSS0044485 Camellia sinensis var. sinensis HOM05D000516 ORTHO05D000409 5.1e-21 104.4 99 61.6
DCAR_028432 Daucus carota HOM05D000516 ORTHO05D000409 5.1e-21 104.4 105 57.1
ClCG05G007170 Citrullus lanatus HOM05D000516 ORTHO05D000409 6.7e-21 104.0 105 60.0
MELO3C006794.2 Cucumis melo HOM05D000516 ORTHO05D000409 6.7e-21 104.0 97 61.9
CsaV3_3G015850 Cucumis sativus L. HOM05D000516 ORTHO05D000409 6.7e-21 104.0 105 59.0
Oeu024476.1 Olea europaea HOM05D000516 ORTHO05D000409 6.7e-21 104.0 98 61.2
Duzib268G0214 Durio zibethinus HOM05D000516 ORTHO05D000409 1.9e-20 102.4 102 63.7
Gohir.D02G012500 Gossypium hirsutum HOM05D000516 ORTHO05D000409 1.9e-20 102.4 108 57.4
Gorai.005G015900 Gossypium raimondii HOM05D000516 ORTHO05D000409 1.9e-20 102.4 108 57.4
Nitab4.5_0001586g0120 Nicotiana tabacum HOM05D000516 ORTHO05D000409 1.9e-20 102.4 107 58.9
RcHm_v2.0_Chr2g0157441 Rosa chinensis HOM05D000516 ORTHO05D000409 1.9e-20 102.4 102 58.8
Gohir.A02G011700 Gossypium hirsutum HOM05D000516 ORTHO05D000409 3.3e-20 101.7 108 56.5
Hma1.2p1_2415F.1_g321700 Hydrangea macrophylla HOM05D000516 ORTHO05D000409 4.3e-20 101.3 99 58.6
Phvul.005G153900 Phaseolus vulgaris HOM05D000516 ORTHO05D000409 4.3e-20 101.3 102 58.8
Sabra17G0016400 Salix brachista HOM05D000516 ORTHO05D000409 4.3e-20 101.3 96 63.5
Lsat_1_v5_gn_5_71180 Lactuca sativa HOM05D000516 ORTHO05D000409 5.6e-20 100.9 96 63.5
Lalb_Chr19g0138381 Lupinus albus HOM05D000516 ORTHO05D000409 5.6e-20 100.9 100 58.0
CiPaw.01G097700 Carya illinoinensis HOM05D000516 ORTHO05D000409 7.4e-20 100.5 109 56.0
Glyma.15G029100 Glycine max HOM05D000516 ORTHO05D000409 7.4e-20 100.5 104 56.7
Manes.11G123600 Manihot esculenta HOM05D000516 ORTHO05D000409 7.4e-20 100.5 96 62.5
FAN07G1598 Fragaria x ananassa HOM05D000516 ORTHO05D000409 1.3e-19 99.8 105 59.0
VMungo1080G0868 Vigna mungo HOM05D000516 ORTHO05D000409 1.3e-19 99.8 104 58.7
Actinidia27082 Actinidia chinensis HOM05D000516 ORTHO05D000409 1.6e-19 99.4 98 58.2
Eucgr.A00102 Eucalyptus grandis HOM05D000516 ORTHO05D000409 1.6e-19 99.4 106 53.8
Eucgr.D00737 Eucalyptus grandis HOM05D000516 ORTHO05D000409 1.6e-19 99.4 106 53.8
Prupe.1G197700 Prunus persica HOM05D000516 ORTHO05D000409 1.6e-19 99.4 106 55.7
Actinidia34585 Actinidia chinensis HOM05D000516 ORTHO05D000409 2.1e-19 99.0 98 58.2
FvH4_4g11161 Fragaria vesca HOM05D000516 ORTHO05D000409 2.1e-19 99.0 105 58.1
Lalb_Chr01g0003111 Lupinus albus HOM05D000516 ORTHO05D000409 2.1e-19 99.0 100 57.0
QL10p050736 Quercus lobata HOM05D000516 ORTHO05D000409 2.1e-19 99.0 110 53.6
Dinv44152 Davidia involucrata HOM05D000516 ORTHO05D000409 2.8e-19 98.6 105 56.2
RcHm_v2.0_Chr4g0407301 Rosa chinensis HOM05D000516 ORTHO05D000409 2.8e-19 98.6 102 58.8
arahy.Tifrunner.gnm1.ann1.H0KCEK Arachis hypogaea HOM05D000516 ORTHO05D000409 3.7e-19 98.2 108 55.6
MSTRG.9757 Avicennia marina HOM05D000516 ORTHO05D000409 3.7e-19 98.2 103 56.3
Duzib151G0443 Durio zibethinus HOM05D000516 ORTHO05D000409 3.7e-19 98.2 108 55.6
Glyma.13G345200 Glycine max HOM05D000516 ORTHO05D000409 3.7e-19 98.2 104 54.8
arahy.Tifrunner.gnm1.ann1.NEJ4KC Arachis hypogaea HOM05D000516 ORTHO05D000409 4.8e-19 97.8 108 55.6
TPR.G18831 Trifolium pratense HOM05D000516 ORTHO05D000409 4.8e-19 97.8 110 54.5
FAN17G0288 Fragaria x ananassa HOM05D000516 ORTHO05D000409 6.2e-19 97.4 105 57.1
Cfa015191 Carpinus fangiana HOM05D000516 ORTHO05D000409 8.2e-19 97.1 109 55.0
Ca_01250_v3 Cicer arietinum L. HOM05D000516 ORTHO05D000409 8.2e-19 97.1 105 58.1
unitig_52.g17683 Utricularia gibba HOM05D000516 ORTHO05D000409 8.2e-19 97.1 106 53.8
CANSAT78G1650 Cannabis sativa HOM05D000516 ORTHO05D000409 1.1e-18 96.7 103 55.3
MD04G1043600 Malus domestica HOM05D000516 ORTHO05D000409 1.1e-18 96.7 106 55.7
unitig_0.g2400 Utricularia gibba HOM05D000516 ORTHO05D000409 1.1e-18 96.7 106 53.8
Haze_01463 Corylus avellana HOM05D000516 ORTHO05D000409 1.4e-18 96.3 109 54.1
Dinv05075 Davidia involucrata HOM05D000516 ORTHO05D000409 1.4e-18 96.3 103 54.4
Migut.G01348 Erythranthe guttata HOM05D000516 ORTHO05D000409 1.4e-18 96.3 109 55.0
FAN22G1058 Fragaria x ananassa HOM05D000516 ORTHO05D000409 1.8e-18 95.9 105 57.1
Lj3C0G3 Lonicera japonica HOM05D000516 ORTHO05D000409 1.8e-18 95.9 100 56.0
Sed0025172 Sechium edule HOM05D000516 ORTHO05D000409 1.8e-18 95.9 104 55.8
Gorai.011G140400 Gossypium raimondii HOM05D000516 ORTHO05D000409 2.4e-18 95.5 104 58.7
MD13G1271600 Malus domestica HOM05D000516 ORTHO05D000409 2.4e-18 95.5 106 56.6
Medtr2g099050 Medicago truncatula HOM05D000516 ORTHO05D000409 2.4e-18 95.5 110 52.7
arahy.Tifrunner.gnm1.ann1.D6MJAY Arachis hypogaea HOM05D000516 ORTHO05D000409 3.1e-18 95.1 108 54.6
Gohir.A10G139500 Gossypium hirsutum HOM05D000516 ORTHO05D000409 3.1e-18 95.1 104 58.7
Peaxi162Scf00180g00131 Petunia axillaris HOM05D000516 ORTHO05D000409 3.1e-18 95.1 107 57.0
Psat5g289760 Pisum sativum HOM05D000516 ORTHO05D000409 3.1e-18 95.1 109 54.1
MSTRG.24575 Avicennia marina HOM05D000516 ORTHO05D000409 5.3e-18 94.4 108 54.6
Sed0013754 Sechium edule HOM05D000516 ORTHO05D000409 5.3e-18 94.4 107 54.2
CiPaw.02G052300 Carya illinoinensis HOM05D000516 ORTHO05D000409 6.9e-18 94.0 109 52.3
Gohir.D10G127400 Gossypium hirsutum HOM05D000516 ORTHO05D000409 6.9e-18 94.0 104 57.7
Lj3C32T11 Lonicera japonica HOM05D000516 ORTHO05D000409 6.9e-18 94.0 101 55.4
Manes.04G039500 Manihot esculenta HOM05D000516 ORTHO05D000409 6.9e-18 94.0 97 56.7
Oeu034446.1 Olea europaea HOM05D000516 ORTHO05D000409 6.9e-18 94.0 100 58.0
Potri.017G027400 Populus trichocarpa HOM05D000516 ORTHO05D000409 6.9e-18 94.0 100 59.0
Hund03174 Selenicereus undatus HOM05D000516 ORTHO05D000409 6.9e-18 94.0 99 61.6
GSVIVG01010836001 Vitis vinifera HOM05D000516 ORTHO05D000409 6.9e-18 94.0 98 57.1
Ciclev10020263m.g Citrus clementina HOM05D000516 ORTHO05D000409 9.0e-18 93.6 105 52.4
SGA_v2.0_scaffold12G06168 Striga asiatica HOM05D000516 ORTHO05D000409 9.0e-18 93.6 103 56.3
HanXRQChr09g0257911 Helianthus annuus HOM05D000516 ORTHO05D000409 1.5e-17 92.8 99 59.6
Sabra07G0106200 Salix brachista HOM05D000516 ORTHO05D000409 2.0e-17 92.4 96 57.3
SGA_v2.0_scaffold12G06169 Striga asiatica HOM05D000516 ORTHO05D000409 2.0e-17 92.4 103 55.3
Lalb_Chr14g0372521 Lupinus albus HOM05D000516 ORTHO05D000409 2.6e-17 92.0 109 55.0
Rhsim09G0022900 Rhododendron simsii HOM05D000516 ORTHO05D000409 2.6e-17 92.0 98 56.1
Potri.007G130800 Populus trichocarpa HOM05D000516 ORTHO05D000409 3.4e-17 91.7 100 57.0
Lalb_Chr24g0396771 Lupinus albus HOM05D000516 ORTHO05D000409 5.8e-17 90.9 109 52.3
vmacro00634 Vaccinium macrocarpon HOM05D000516 ORTHO05D000409 5.8e-17 90.9 98 55.1
AUR62023846 Chenopodium quinoa HOM05D000516 ORTHO05D000409 1.0e-16 90.1 97 57.7
Gohir.A09G212100 Gossypium hirsutum HOM05D000516 ORTHO05D000409 1.0e-16 90.1 111 53.2
Atru.chr4.1259 Acer truncatum HOM05D000516 ORTHO05D000409 1.3e-16 89.7 106 50.0
DCAR_023944 Daucus carota HOM05D000516 ORTHO05D000409 1.3e-16 89.7 104 52.9
Gohir.D09G205600 Gossypium hirsutum HOM05D000516 ORTHO05D000409 1.3e-16 89.7 111 52.3
Gorai.006G229500 Gossypium raimondii HOM05D000516 ORTHO05D000409 1.3e-16 89.7 111 52.3
TWI63G0668 Tripterygium wilfordii HOM05D000516 ORTHO05D000409 1.3e-16 89.7 102 52.9
AUR62002345 Chenopodium quinoa HOM05D000516 ORTHO05D000409 1.7e-16 89.4 97 56.7
Lalb_Chr22g0352071 Lupinus albus HOM05D000516 ORTHO05D000409 1.7e-16 89.4 109 52.3
arahy.Tifrunner.gnm1.ann1.SPP1BM Arachis hypogaea HOM05D000516 ORTHO05D000409 2.2e-16 89.0 111 51.4
Nitab4.5_0006064g0050 Nicotiana tabacum HOM05D000516 ORTHO05D000409 2.2e-16 89.0 107 53.3
Lj3g0002701 Lotus japonicus HOM05D000516 ORTHO05D000409 3.8e-16 88.2 101 56.4
AT1G06070 Arabidopsis thaliana HOM05D000516 ORTHO05D000409 6.5e-16 87.4 99 54.5
Lsat_1_v5_gn_2_38660 Lactuca sativa HOM05D000516 ORTHO05D000409 6.5e-16 87.4 96 54.2
Lju682C3T1 Lonicera japonica HOM05D000516 ORTHO05D000409 8.4e-16 87.0 100 58.0
TAR365G0470 Trochodendron aralioides HOM05D000516 ORTHO05D000409 8.4e-16 87.0 96 54.2
AL1G16020 Arabidopsis lyrata HOM05D000516 ORTHO05D000409 1.1e-15 86.7 99 54.5
Carub.0001s0540 Capsella rubella HOM05D000516 ORTHO05D000409 1.1e-15 86.7 99 54.5
THA.LOC104826197 Tarenaya hassleriana HOM05D000516 ORTHO05D000409 1.1e-15 86.7 107 53.3
EL10Ac3g06006 Beta vulgaris HOM05D000516 ORTHO05D000409 2.5e-15 85.5 97 55.7
TAR633G1959 Trochodendron aralioides HOM05D000516 ORTHO05D000409 2.5e-15 85.5 96 53.1
arahy.Tifrunner.gnm1.ann1.KX9K6H Arachis hypogaea HOM05D000516 ORTHO05D000409 3.2e-15 85.1 111 49.5
ECA238G0676 Erigeron canadensis HOM05D000516 ORTHO05D000409 4.2e-15 84.7 96 55.2
Sp1g04880 Schrenkiella parvula HOM05D000516 ORTHO05D000409 5.5e-15 84.3 99 53.5
Aa31LG5G5580 Aethionema arabicum HOM05D000516 ORTHO05D000409 7.1e-15 84.0 103 56.3
Duzib212G0137 Durio zibethinus HOM05D000516 ORTHO05D000409 7.1e-15 84.0 115 49.6
TAR362G1027 Trochodendron aralioides HOM05D000516 ORTHO05D000409 7.1e-15 84.0 96 51.0
CARHR005590 Cardamine hirsuta HOM05D000516 ORTHO05D000409 9.3e-15 83.6 99 52.5
Thhalv10007692m.g Eutrema salsugineum HOM05D000516 ORTHO05D000409 1.2e-14 83.2 99 52.5
PGR142G0622 Punica granatum HOM05D000516 ORTHO05D000409 1.2e-14 83.2 111 51.4
CDE09G0718 Ceratophyllum demersum HOM05D000516 ORTHO05D000409 3.5e-14 81.6 98 54.1
Ah.07g202350 Amaranthus hybridus HOM05D000516 ORTHO05D000409 1.0e-13 80.1 96 54.2
Migut.E00835 Erythranthe guttata HOM05D000516 ORTHO05D000409 1.0e-13 80.1 97 51.5
Sp4g13850 Schrenkiella parvula HOM05D000516 ORTHO05D000409 1.0e-13 80.1 104 53.8
AT2G31370 Arabidopsis thaliana HOM05D000516 ORTHO05D000409 5.1e-13 77.8 107 50.5
Oeu064765.1 Olea europaea HOM05D000516 ORTHO05D000409 5.1e-13 77.8 98 52.0
SEGI_20718 Sequoiadendron giganteum HOM05D000516 ORTHO05D000409 5.1e-13 77.8 62 66.1
TWI38G0634 Tripterygium wilfordii HOM05D000516 ORTHO05D000409 5.1e-13 77.8 102 50.0
AL4G26620 Arabidopsis lyrata HOM05D000516 ORTHO05D000409 6.7e-13 77.4 104 52.9
Sed0026015 Sechium edule HOM05D000516 ORTHO05D000409 6.7e-13 77.4 98 51.0
Sc19g0002860 Simmondsia chinensis HOM05D000516 ORTHO05D000409 6.7e-13 77.4 108 52.8
CARHR125000 Cardamine hirsuta HOM05D000516 ORTHO05D000409 8.7e-13 77.0 104 50.0
BcaC02g07979 Brassica carinata HOM05D000516 ORTHO05D000409 1.1e-12 76.6 96 52.1
C04p61150 Brassica napus HOM05D000516 ORTHO05D000409 1.1e-12 76.6 96 52.1
BolC4t27600H Brassica oleracea HOM05D000516 ORTHO05D000409 1.1e-12 76.6 96 52.1
Eucgr.L02536 Eucalyptus grandis HOM05D000516 ORTHO05D000409 1.1e-12 76.6 119 42.0
Thhalv10016790m.g Eutrema salsugineum HOM05D000516 ORTHO05D000409 1.1e-12 76.6 103 52.4
C08p02380 Brassica napus HOM05D000516 ORTHO05D000409 1.5e-12 76.3 96 53.1
BolC8t47030H Brassica oleracea HOM05D000516 ORTHO05D000409 1.5e-12 76.3 96 53.1
THA.LOC104800891 Tarenaya hassleriana HOM05D000516 ORTHO05D000409 1.5e-12 76.3 107 48.6
A04p24320 Brassica napus HOM05D000516 ORTHO05D000409 1.9e-12 75.9 98 50.0
BraA04t17951Z Brassica rapa HOM05D000516 ORTHO05D000409 1.9e-12 75.9 98 50.0
BcaB06g28552 Brassica carinata HOM05D000516 ORTHO05D000409 3.3e-12 75.1 102 51.0
BcaB02g10387 Brassica carinata HOM05D000516 ORTHO05D000409 5.7e-12 74.3 98 51.0
Carub.0004s1269 Capsella rubella HOM05D000516 ORTHO05D000409 5.7e-12 74.3 104 51.0
Eucgr.H00344 Eucalyptus grandis HOM05D000516 ORTHO05D000409 7.4e-12 73.9 119 41.2
C04p18960 Brassica napus HOM05D000516 ORTHO05D000409 9.7e-12 73.6 100 49.0
BolC4t23426H Brassica oleracea HOM05D000516 ORTHO05D000409 9.7e-12 73.6 100 49.0
HPP92_002741 Vanilla planifolia HOM05D000516 ORTHO05D000409 2.2e-11 72.4 99 46.5
Ah.13g073800 Amaranthus hybridus HOM05D000516 ORTHO05D000409 4.8e-11 71.2 96 51.0
Hund12413 Selenicereus undatus HOM05D000516 ORTHO05D000409 6.3e-11 70.9 55 69.1
Nn1g09710 Nelumbo nucifera HOM05D000516 ORTHO05D000409 1.4e-10 69.7 102 47.1
BcaC02g11237 Brassica carinata HOM05D000516 ORTHO05D000409 1.8e-10 69.3 102 47.1
A05p14230 Brassica napus HOM05D000516 ORTHO05D000409 3.1e-10 68.6 101 48.5
BraA08t35520Z Brassica rapa HOM05D000516 ORTHO05D000409 5.3e-10 67.8 96 49.0
COL.COLO4_10080 Corchorus olitorius HOM05D000516 ORTHO05D000409 5.3e-10 67.8 111 46.8
BraA05t20354Z Brassica rapa HOM05D000516 ORTHO05D000409 6.9e-10 67.4 101 47.5
A08p36130 Brassica napus HOM05D000516 ORTHO05D000409 3.4e-09 65.1 96 49.0
Thecc.04G175500 Theobroma cacao HOM05D000516 ORTHO05D000409 3.4e-09 65.1 110 44.5
arahy.Tifrunner.gnm1.ann1.16U9TH Arachis hypogaea HOM05D000516 ORTHO05D000409 1.0e-08 63.5 78 52.6
Aqoxy2G04127 Aquilegia oxysepala HOM05D000516 ORTHO05D000409 2.2e-08 62.4 98 41.8
ECA248G0670 Erigeron canadensis HOM05D000516 ORTHO05D000409 2.9e-08 62.0 96 43.8
VMungo1127G2098 Vigna mungo HOM05D000516 ORTHO05D000409 3.8e-08 61.6 59 55.9
ATR0743G138 Amborella trichopoda HOM05D000516 ORTHO05D000409 8.5e-08 60.5 64 60.9
PSO017G4163 Papaver somniferum HOM05D000516 ORTHO05D000409 8.5e-08 60.5 104 45.2
PSO675G7628 Papaver somniferum HOM05D000516 ORTHO05D000409 1.1e-07 60.1 104 45.2
Phvul.011G053500 Phaseolus vulgaris HOM05D000516 ORTHO05D000409 1.1e-07 60.1 59 54.2
A10p04690 Brassica napus HOM05D000516 ORTHO05D000409 1.9e-07 59.3 101 44.6
BraA10t42733Z Brassica rapa HOM05D000516 ORTHO05D000409 1.9e-07 59.3 101 44.6
Lsat_1_v5_gn_1_77800 Lactuca sativa HOM05D000516 ORTHO05D000409 3.2e-07 58.5 98 43.9
BcaC05g24312 Brassica carinata HOM05D000516 ORTHO05D000409 4.2e-07 58.2 103 45.6
C05p04350 Brassica napus HOM05D000516 ORTHO05D000409 4.2e-07 58.2 103 45.6
BolC5t29209H Brassica oleracea HOM05D000516 ORTHO05D000409 4.2e-07 58.2 103 45.6
CSS0008034 Camellia sinensis var. sinensis HOM05D000489 ORTHO05D000372 4.2e-07 58.2 46 65.2


User provided reference genes

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