Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G4608.1 Capsicum annuum HOM05D003653 ORTHO05D004249 9.7e-127 456.8 231 100.0
CAN.G1364.1 Capsicum annuum HOM05D003653 ORTHO05D004249 1.8e-104 382.9 196 99.5
CAN.G2030.2 Capsicum annuum HOM05D003653 ORTHO05D004249 9.5e-66 254.2 130 99.2
CAN.G137.40 Capsicum annuum HOM05D003653 ORTHO05D004249 4.0e-64 248.8 130 96.9
Nitab4.5_0001114g0100 Nicotiana tabacum HOM05D003653 ORTHO05D004249 6.8e-64 248.1 130 96.9
Nitab4.5_0022446g0010 Nicotiana tabacum HOM05D003653 ORTHO05D004249 6.8e-64 248.1 130 96.9
Sopen04g003800 Solanum pennellii HOM05D003653 ORTHO05D004249 2.6e-63 246.1 130 96.2
Solyc04g008640.3 Solanum lycopersicum HOM05D003653 ORTHO05D004249 7.5e-63 244.6 130 95.4
Sopen07g006320 Solanum pennellii HOM05D003653 ORTHO05D004249 9.8e-63 244.2 130 94.6
PGSC0003DMG400026759 Solanum tuberosum HOM05D003653 ORTHO05D004249 3.2e-61 239.2 133 93.2
Peaxi162Scf00320g00019 Petunia axillaris HOM05D003653 ORTHO05D004249 2.7e-60 236.1 130 91.5
Cc06_g12780 Coffea canephora HOM05D003653 ORTHO05D004249 3.9e-51 205.7 130 80.8
QL02p096361 Quercus lobata HOM05D003653 ORTHO05D004249 1.1e-50 204.1 130 81.5
GSVIVG01015003001 Vitis vinifera HOM05D003653 ORTHO05D004249 1.1e-50 204.1 130 79.2
QL02p096254 Quercus lobata HOM05D003653 ORTHO05D004249 2.5e-50 203.0 130 80.8
Eucgr.C00763 Eucalyptus grandis HOM05D003653 ORTHO05D004249 3.3e-50 202.6 130 79.2
Ciclev10007512m.g Citrus clementina HOM05D003653 ORTHO05D004249 5.6e-50 201.8 130 78.5
Aqoxy7G04180 Aquilegia oxysepala HOM05D003653 ORTHO05D004249 7.3e-50 201.4 130 79.2
Cfa000655 Carpinus fangiana HOM05D003653 ORTHO05D004249 7.3e-50 201.4 130 79.2
Oeu028863.2 Olea europaea HOM05D003653 ORTHO05D004249 7.3e-50 201.4 132 80.3
Haze_18437 Corylus avellana HOM05D003653 ORTHO05D004249 1.2e-49 200.7 130 78.5
CANSAT56G3945 Cannabis sativa HOM05D003653 ORTHO05D004249 2.1e-49 199.9 130 79.2
Aqoxy4G00013 Aquilegia oxysepala HOM05D003653 ORTHO05D004249 2.8e-49 199.5 130 79.2
Lsat_1_v5_gn_9_48260 Lactuca sativa HOM05D003653 ORTHO05D004249 3.6e-49 199.1 130 79.2
Manes.03G045400 Manihot esculenta HOM05D003653 ORTHO05D004249 3.6e-49 199.1 132 76.5
SalBow5G5324 Salvia bowleyana HOM05D003653 ORTHO05D004249 3.6e-49 199.1 130 79.2
SGA_v2.0_scaffold55G19872 Striga asiatica HOM05D003653 ORTHO05D004249 4.7e-49 198.7 130 79.2
CDE08G1372 Ceratophyllum demersum HOM05D003653 ORTHO05D004249 6.2e-49 198.4 132 77.3
Nn8g38522 Nelumbo nucifera HOM05D003653 ORTHO05D004249 8.1e-49 198.0 130 77.7
COL.COLO4_21195 Corchorus olitorius HOM05D003653 ORTHO05D004249 2.4e-48 196.4 130 79.2
MBI13_g01694_MAGBIO Magnolia biondii HOM05D003653 ORTHO05D004249 2.4e-48 196.4 130 77.7
Dinv11396 Davidia involucrata HOM05D003653 ORTHO05D004249 3.1e-48 196.1 130 76.9
Hma1.2p1_0179F.1_g079140 Hydrangea macrophylla HOM05D003653 ORTHO05D004249 3.1e-48 196.1 130 76.2
Sc18g0002910 Simmondsia chinensis HOM05D003653 ORTHO05D004249 3.1e-48 196.1 130 77.7
Aqoxy1G02116 Aquilegia oxysepala HOM05D003653 ORTHO05D004249 4.0e-48 195.7 130 77.7
MSTRG.26501 Avicennia marina HOM05D003653 ORTHO05D004249 4.0e-48 195.7 130 78.5
CiPaw.08G039100 Carya illinoinensis HOM05D003653 ORTHO05D004249 4.0e-48 195.7 130 77.7
CiPaw.07G188300 Carya illinoinensis HOM05D003653 ORTHO05D004249 5.2e-48 195.3 130 78.5
Manes.16G089600 Manihot esculenta HOM05D003653 ORTHO05D004249 5.2e-48 195.3 130 76.2
PSO541G4412 Papaver somniferum HOM05D003653 ORTHO05D004249 5.2e-48 195.3 130 75.4
Duzib150G1359 Durio zibethinus HOM05D003653 ORTHO05D004249 6.8e-48 194.9 130 77.7
Cpa.g.sc82.47 Carica papaya HOM05D003653 ORTHO05D004249 1.2e-47 194.1 130 76.2
Migut.L01598 Erythranthe guttata HOM05D003653 ORTHO05D004249 1.2e-47 194.1 130 77.7
HanXRQChr11g0323951 Helianthus annuus HOM05D003653 ORTHO05D004249 1.2e-47 194.1 134 75.4
Thecc.09G069200 Theobroma cacao HOM05D003653 ORTHO05D004249 1.2e-47 194.1 130 77.7
Rhsim06G0154000 Rhododendron simsii HOM05D003653 ORTHO05D004249 2.0e-47 193.4 144 69.4
AL2G33210 Arabidopsis lyrata HOM05D003653 ORTHO05D004249 2.6e-47 193.0 138 75.4
RcHm_v2.0_Chr2g0096121 Rosa chinensis HOM05D003653 ORTHO05D004249 2.6e-47 193.0 130 77.7
Actinidia05573 Actinidia chinensis HOM05D003653 ORTHO05D004249 3.4e-47 192.6 130 76.2
Ah.09g228870 Amaranthus hybridus HOM05D003653 ORTHO05D004249 3.4e-47 192.6 130 76.2
DCAR_028533 Daucus carota HOM05D003653 ORTHO05D004249 3.4e-47 192.6 130 76.9
ECA247G3145 Erigeron canadensis HOM05D003653 ORTHO05D004249 3.4e-47 192.6 130 77.7
Thhalv10018146m.g Eutrema salsugineum HOM05D003653 ORTHO05D004249 3.4e-47 192.6 138 74.6
PSO135G0095 Papaver somniferum HOM05D003653 ORTHO05D004249 3.4e-47 192.6 130 73.8
AT1G73430 Arabidopsis thaliana HOM05D003653 ORTHO05D004249 4.4e-47 192.2 138 75.4
CARHR066480 Cardamine hirsuta HOM05D003653 ORTHO05D004249 4.4e-47 192.2 131 77.1
Carub.0001s3831 Capsella rubella HOM05D003653 ORTHO05D004249 5.8e-47 191.8 133 78.2
FvH4_1g09540 Fragaria vesca HOM05D003653 ORTHO05D004249 5.8e-47 191.8 130 76.9
FAN19G0402 Fragaria x ananassa HOM05D003653 ORTHO05D004249 5.8e-47 191.8 130 76.9
FAN23G3130 Fragaria x ananassa HOM05D003653 ORTHO05D004249 5.8e-47 191.8 130 76.9
FAN26G2747 Fragaria x ananassa HOM05D003653 ORTHO05D004249 5.8e-47 191.8 130 76.9
FAN28G1145 Fragaria x ananassa HOM05D003653 ORTHO05D004249 5.8e-47 191.8 130 76.9
PSO675G3146 Papaver somniferum HOM05D003653 ORTHO05D004249 5.8e-47 191.8 132 73.5
Duzib187G0285 Durio zibethinus HOM05D003653 ORTHO05D004249 7.6e-47 191.4 130 76.2
PSO724G1082 Papaver somniferum HOM05D003653 ORTHO05D004249 7.6e-47 191.4 130 73.8
Sp5g28630 Schrenkiella parvula HOM05D003653 ORTHO05D004249 7.6e-47 191.4 131 76.3
Glyma.17G045100 Glycine max HOM05D003653 ORTHO05D004249 9.9e-47 191.0 130 74.6
THA.LOC104812181 Tarenaya hassleriana HOM05D003653 ORTHO05D004249 9.9e-47 191.0 133 76.7
TWI32G0371 Tripterygium wilfordii HOM05D003653 ORTHO05D004249 9.9e-47 191.0 130 74.6
Glyma.13G114900 Glycine max HOM05D003653 ORTHO05D004249 1.3e-46 190.7 130 74.6
MD15G1224400 Malus domestica HOM05D003653 ORTHO05D004249 1.3e-46 190.7 130 76.9
Phvul.003G126900 Phaseolus vulgaris HOM05D003653 ORTHO05D004249 2.2e-46 189.9 130 75.4
Potri.010G138900 Populus trichocarpa HOM05D003653 ORTHO05D004249 2.9e-46 189.5 130 72.3
ATR0099G047 Amborella trichopoda HOM05D003653 ORTHO05D004249 4.9e-46 188.7 130 73.1
Carub.0002s2017 Capsella rubella HOM05D003653 ORTHO05D004249 4.9e-46 188.7 138 73.2
MD02G1104000 Malus domestica HOM05D003653 ORTHO05D004249 8.4e-46 188.0 130 76.9
Prupe.7G190900 Prunus persica HOM05D003653 ORTHO05D004249 8.4e-46 188.0 130 76.2
unitig_8.g3535 Utricularia gibba HOM05D003653 ORTHO05D004249 8.4e-46 188.0 135 73.3
A07p39380 Brassica napus HOM05D003653 ORTHO05D004249 1.1e-45 187.6 138 73.2
C06p47610 Brassica napus HOM05D003653 ORTHO05D004249 1.1e-45 187.6 138 73.2
BolC6t39799H Brassica oleracea HOM05D003653 ORTHO05D004249 1.1e-45 187.6 138 73.2
BraA07t31487Z Brassica rapa HOM05D003653 ORTHO05D004249 1.1e-45 187.6 138 73.2
Gorai.013G221900 Gossypium raimondii HOM05D003653 ORTHO05D004249 1.1e-45 187.6 130 76.2
Lj4g0027638 Lotus japonicus HOM05D003653 ORTHO05D004249 1.4e-45 187.2 130 72.3
Lalb_Chr13g0299181 Lupinus albus HOM05D003653 ORTHO05D004249 1.4e-45 187.2 130 73.8
RcHm_v2.0_Chr2g0096281 Rosa chinensis HOM05D003653 ORTHO05D004249 1.4e-45 187.2 130 74.6
Atru.chr7.1784 Acer truncatum HOM05D003653 ORTHO05D004249 2.4e-45 186.4 130 76.2
Gohir.A13G188800 Gossypium hirsutum HOM05D003653 ORTHO05D004249 2.4e-45 186.4 130 76.2
VMungo1215G1873 Vigna mungo HOM05D003653 ORTHO05D004249 2.4e-45 186.4 130 73.8
Gohir.D06G081700 Gossypium hirsutum HOM05D003653 ORTHO05D004249 3.2e-45 186.0 130 73.1
Gohir.D13G195800 Gossypium hirsutum HOM05D003653 ORTHO05D004249 3.2e-45 186.0 130 75.4
arahy.Tifrunner.gnm1.ann1.H5KB4L Arachis hypogaea HOM05D003653 ORTHO05D004249 7.1e-45 184.9 130 73.1
Gorai.010G095200 Gossypium raimondii HOM05D003653 ORTHO05D004249 9.2e-45 184.5 130 72.3
TPR.G12688 Trifolium pratense HOM05D003653 ORTHO05D004249 2.1e-44 183.3 130 72.3
Pp3c10_7010 Physcomitrium patens HOM05D003653 ORTHO05D004249 2.7e-44 183.0 130 70.0
Psat4g019560 Pisum sativum HOM05D003653 ORTHO05D004249 2.7e-44 183.0 130 72.3
Os08g0451000 Oryza sativa ssp. japonica HOM05D003653 ORTHO05D004249 3.5e-44 182.6 130 72.3
Gohir.A06G084400 Gossypium hirsutum HOM05D003653 ORTHO05D004249 1.0e-43 181.0 130 70.8
FAN26G0928 Fragaria x ananassa HOM05D003653 ORTHO05D004249 1.7e-43 180.3 122 77.9
Medtr4g124570 Medicago truncatula HOM05D003653 ORTHO05D004249 1.7e-43 180.3 130 71.5
HPP92_012790 Vanilla planifolia HOM05D003653 ORTHO05D004249 2.3e-43 179.9 138 66.7
vmacro03339 Vaccinium macrocarpon HOM05D003653 ORTHO05D004249 3.9e-43 179.1 157 63.1
ClCG08G005060 Citrullus lanatus HOM05D003653 ORTHO05D004249 8.7e-43 177.9 130 70.8
Sed0017256 Sechium edule HOM05D003653 ORTHO05D004249 2.5e-42 176.4 130 70.0
EL10Ac8g18959 Beta vulgaris HOM05D003653 ORTHO05D004249 5.6e-42 175.3 130 72.3
Mapoly0109s0022 Marchantia polymorpha HOM05D003653 ORTHO05D004249 7.3e-42 174.9 130 66.9
MELO3C022888.2 Cucumis melo HOM05D003653 ORTHO05D004249 2.1e-41 173.3 130 68.5
Zm00001eb040740 Zea mays HOM05D003653 ORTHO05D004249 2.1e-41 173.3 130 69.2
TAR626G0857 Trochodendron aralioides HOM05D003653 ORTHO05D004249 3.6e-41 172.6 130 70.8
CsaV3_5G037140 Cucumis sativus L. HOM05D003653 ORTHO05D004249 1.4e-40 170.6 130 66.9
SEGI_38760 Sequoiadendron giganteum HOM05D003653 ORTHO05D004249 5.3e-40 168.7 132 67.4
Pp3c14_9870 Physcomitrium patens HOM05D003653 ORTHO05D004249 1.5e-39 167.2 129 65.1
BolC2t09153H Brassica oleracea HOM05D003653 ORTHO05D004249 2.6e-39 166.4 131 67.9
BcaC08g46765 Brassica carinata HOM05D003653 ORTHO05D004249 7.6e-39 164.9 130 70.8
Aa31LG4G3690 Aethionema arabicum HOM05D003653 ORTHO05D004249 8.4e-38 161.4 131 67.2
Haze_06172 Corylus avellana HOM05D003653 ORTHO05D004249 7.8e-36 154.8 228 46.1
Lj4C921G8 Lonicera japonica HOM05D003653 ORTHO05D004249 6.2e-33 145.2 112 72.3
SMO196G0011 Selaginella moellendorffii HOM05D003653 ORTHO05D004249 1.4e-29 134.0 131 57.3
AUR62028329 Chenopodium quinoa HOM05D003653 ORTHO05D004249 3.2e-29 132.9 130 56.9
Sabra10G0107200 Salix brachista HOM05D003653 ORTHO05D004249 4.2e-29 132.5 130 55.4
C02p31060 Brassica napus HOM05D003653 ORTHO05D004249 5.4e-29 132.1 99 70.7
AUR62025332 Chenopodium quinoa HOM05D003653 ORTHO05D004249 7.1e-29 131.7 130 56.2
arahy.Tifrunner.gnm1.ann1.LZJ3ZW Arachis hypogaea HOM05D003653 ORTHO05D004249 3.0e-27 126.3 130 53.8
CBR_g20391 Chara braunii HOM05D003653 ORTHO05D004249 1.1e-26 124.4 156 44.2
Hund08907 Selenicereus undatus HOM05D003653 ORTHO05D004249 1.5e-26 124.0 132 55.3
Lj6C103G5 Lonicera japonica HOM05D003653 ORTHO05D004249 2.9e-22 109.8 189 42.3
BcaNung06460 Brassica carinata HOM05D003653 ORTHO05D004249 9.3e-21 104.8 81 65.4
Lj6C86G4 Lonicera japonica HOM05D003653 ORTHO05D004249 5.6e-18 95.5 112 54.5
Lsat_1_v5_gn_7_30301 Lactuca sativa HOM05D003653 ORTHO05D004249 2.8e-17 93.2 61 83.6
Cre03.g203750 Chlamydomonas reinhardtii HOM05D003653 ORTHO05D004249 1.2e-15 87.8 129 38.0
Lsat_1_v5_gn_2_18300 Lactuca sativa HOM05D003653 ORTHO05D004249 1.5e-15 87.4 61 82.0
Cfa023740 Carpinus fangiana HOM05D003653 ORTHO05D004249 2.0e-15 87.0 177 35.6
CSS0022673 Camellia sinensis var. sinensis HOM05D003653 ORTHO05D004249 2.7e-12 76.6 50 74.0
PRCOL_00003556 Prasinoderma coloniale HOM05D003653 ORTHO05D004249 1.1e-10 71.2 107 39.3
Lsat_1_v5_gn_2_26321 Lactuca sativa HOM05D003653 ORTHO05D004249 5.7e-10 68.9 38 92.1
Lsat_1_v5_gn_4_28660 Lactuca sativa HOM05D003653 ORTHO05D004249 5.7e-10 68.9 38 92.1
Lsat_1_v5_gn_6_63001 Lactuca sativa HOM05D003653 ORTHO05D004249 5.7e-10 68.9 38 92.1
Lsat_1_v5_gn_7_58641 Lactuca sativa HOM05D003653 ORTHO05D004249 5.7e-10 68.9 38 92.1
Lsat_1_v5_gn_5_93841 Lactuca sativa HOM05D003653 ORTHO05D004249 1.3e-09 67.8 37 91.9
Lsat_1_v5_gn_2_82101 Lactuca sativa HOM05D003653 ORTHO05D004249 1.6e-09 67.4 38 89.5
TAR383G1054 Trochodendron aralioides HOM05D003653 ORTHO05D004249 2.2e-09 67.0 139 40.3
Haze_16165 Corylus avellana HOM05D003653 ORTHO05D004249 3.4e-07 59.7 164 33.5
Lsat_1_v5_gn_2_35921 Lactuca sativa HOM05D003653 ORTHO05D004249 5.9e-07 58.9 41 73.2


User provided reference genes

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