Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G458.6 Capsicum annuum HOM05D005212 ORTHO05D006353 6.4e-185 650.6 324 100.0
Solyc04g007850.3 Solanum lycopersicum HOM05D005212 ORTHO05D006353 7.1e-168 594.0 324 91.4
Sopen04g002980 Solanum pennellii HOM05D005212 ORTHO05D006353 6.6e-166 587.4 324 90.4
Nitab4.5_0009115g0010 Nicotiana tabacum HOM05D005212 ORTHO05D006353 4.3e-157 558.1 325 87.4
Peaxi162Scf00723g00423 Petunia axillaris HOM05D005212 ORTHO05D006353 3.3e-149 531.9 335 80.9
PGSC0003DMG400029477 Solanum tuberosum HOM05D005212 ORTHO05D006353 6.9e-147 524.2 299 88.3
CSS0012951 Camellia sinensis var. sinensis HOM05D005212 ORTHO05D006353 3.0e-118 429.1 325 64.6
GSVIVG01023834001 Vitis vinifera HOM05D005212 ORTHO05D006353 2.6e-114 416.0 326 64.7
CiPaw.05G194300 Carya illinoinensis HOM05D005212 ORTHO05D006353 7.2e-112 407.9 325 63.7
Migut.E00446 Erythranthe guttata HOM05D005212 ORTHO05D006353 1.2e-111 407.1 326 64.1
Prupe.8G002300 Prunus persica HOM05D005212 ORTHO05D006353 8.0e-111 404.4 324 64.5
Gohir.D09G202000 Gossypium hirsutum HOM05D005212 ORTHO05D006353 1.5e-109 400.2 325 62.8
Gohir.D13G128200 Gossypium hirsutum HOM05D005212 ORTHO05D006353 2.6e-109 399.4 325 62.8
Gorai.013G143600 Gossypium raimondii HOM05D005212 ORTHO05D006353 4.4e-109 398.7 325 62.8
Gorai.006G225800 Gossypium raimondii HOM05D005212 ORTHO05D006353 7.5e-109 397.9 325 62.5
Prupe.1G329700 Prunus persica HOM05D005212 ORTHO05D006353 4.8e-108 395.2 323 62.2
Rhsim09G0094100 Rhododendron simsii HOM05D005212 ORTHO05D006353 4.8e-108 395.2 325 61.8
Ca_24783_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 8.3e-108 394.4 326 62.6
Duzib268G0887 Durio zibethinus HOM05D005212 ORTHO05D006353 1.4e-107 393.7 325 61.2
Oeu014050.1 Olea europaea HOM05D005212 ORTHO05D006353 2.4e-107 392.9 325 64.9
Nn3g18288 Nelumbo nucifera HOM05D005212 ORTHO05D006353 5.3e-107 391.7 326 61.7
Thecc.04G190200 Theobroma cacao HOM05D005212 ORTHO05D006353 7.0e-107 391.3 326 60.7
Gohir.A09G208525 Gossypium hirsutum HOM05D005212 ORTHO05D006353 2.7e-106 389.4 328 62.2
Gohir.A13G124600 Gossypium hirsutum HOM05D005212 ORTHO05D006353 4.5e-106 388.7 325 61.5
Lalb_Chr07g0187701 Lupinus albus HOM05D005212 ORTHO05D006353 4.5e-106 388.7 326 61.7
Duzib151G1103 Durio zibethinus HOM05D005212 ORTHO05D006353 1.7e-105 386.7 326 61.7
HanXRQChr12g0363921 Helianthus annuus HOM05D005212 ORTHO05D006353 1.7e-105 386.7 327 59.3
Potri.001G461100 Populus trichocarpa HOM05D005212 ORTHO05D006353 1.7e-105 386.7 326 59.8
Ciclev10028815m.g Citrus clementina HOM05D005212 ORTHO05D006353 2.9e-105 386.0 331 61.6
THA.LOC104816387 Tarenaya hassleriana HOM05D005212 ORTHO05D006353 8.5e-105 384.4 330 59.4
Lj4g0012207 Lotus japonicus HOM05D005212 ORTHO05D006353 1.9e-104 383.3 325 60.6
GSVIVG01011709001 Vitis vinifera HOM05D005212 ORTHO05D006353 1.9e-104 383.3 339 59.9
PGR102G0858 Punica granatum HOM05D005212 ORTHO05D006353 4.2e-104 382.1 328 60.7
Atru.chr12.1198 Acer truncatum HOM05D005212 ORTHO05D006353 5.5e-104 381.7 331 59.5
QL03p033836 Quercus lobata HOM05D005212 ORTHO05D006353 4.7e-103 378.6 288 66.0
ECA233G1697 Erigeron canadensis HOM05D005212 ORTHO05D006353 1.0e-102 377.5 333 58.6
TWI60G0083 Tripterygium wilfordii HOM05D005212 ORTHO05D006353 1.4e-102 377.1 325 60.0
Medtr3g088850 Medicago truncatula HOM05D005212 ORTHO05D006353 1.8e-102 376.7 327 60.2
Manes.17G080300 Manihot esculenta HOM05D005212 ORTHO05D006353 2.3e-102 376.3 330 59.7
TPR.G18569 Trifolium pratense HOM05D005212 ORTHO05D006353 5.2e-102 375.2 326 59.5
Medtr3g096970 Medicago truncatula HOM05D005212 ORTHO05D006353 6.8e-102 374.8 330 59.1
TPR.G5141 Trifolium pratense HOM05D005212 ORTHO05D006353 1.5e-101 373.6 326 59.2
HanXRQChr08g0212231 Helianthus annuus HOM05D005212 ORTHO05D006353 4.4e-101 372.1 324 58.0
Psat7g082520 Pisum sativum HOM05D005212 ORTHO05D006353 4.4e-101 372.1 327 59.0
SGA_v2.0_scaffold39G15210 Striga asiatica HOM05D005212 ORTHO05D006353 1.7e-100 370.2 328 58.8
Ciclev10017606m.g Citrus clementina HOM05D005212 ORTHO05D006353 2.8e-100 369.4 320 64.1
CANSAT01G1481 Cannabis sativa HOM05D005212 ORTHO05D006353 6.3e-100 368.2 323 57.6
Hma1.2p1_0060F.1_g032750 Hydrangea macrophylla HOM05D005212 ORTHO05D006353 8.3e-100 367.9 326 58.6
FvH4_4g34100 Fragaria vesca HOM05D005212 ORTHO05D006353 5.4e-99 365.2 325 57.2
Lj3C867T4 Lonicera japonica HOM05D005212 ORTHO05D006353 5.4e-99 365.2 303 61.4
RcHm_v2.0_Chr3g0448371 Rosa chinensis HOM05D005212 ORTHO05D006353 1.5e-96 357.1 325 57.5
Aqoxy7G01425 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 4.2e-96 355.5 326 59.2
Glyma.08G095400 Glycine max HOM05D005212 ORTHO05D006353 4.2e-96 355.5 329 57.1
EL10Ac9g21945 Beta vulgaris HOM05D005212 ORTHO05D006353 1.2e-95 354.0 329 56.8
RcHm_v2.0_Chr4g0443611 Rosa chinensis HOM05D005212 ORTHO05D006353 1.2e-95 354.0 326 56.7
vmacro10659 Vaccinium macrocarpon HOM05D005212 ORTHO05D006353 1.6e-95 353.6 323 58.8
Thhalv10001552m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 2.1e-95 353.2 329 57.1
Haze_10945 Corylus avellana HOM05D005212 ORTHO05D006353 3.6e-95 352.4 325 56.6
Sp4g26600 Schrenkiella parvula HOM05D005212 ORTHO05D006353 1.8e-94 350.1 328 55.8
CARHR139690 Cardamine hirsuta HOM05D005212 ORTHO05D006353 4.0e-94 349.0 326 55.8
MD16G1023100 Malus domestica HOM05D005212 ORTHO05D006353 4.0e-94 349.0 281 63.3
AL4G43530 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 1.5e-93 347.1 326 54.6
SalBow2G0696 Salvia bowleyana HOM05D005212 ORTHO05D006353 4.4e-93 345.5 294 61.9
Lsat_1_v5_gn_4_8681 Lactuca sativa HOM05D005212 ORTHO05D006353 2.2e-92 343.2 252 63.5
AT2G44510 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 8.3e-92 341.3 326 54.0
BolC4t28609H Brassica oleracea HOM05D000073 ORTHO05D006353 1.8e-91 340.1 326 54.3
BcaC02g07097 Brassica carinata HOM05D005212 ORTHO05D006353 3.2e-91 339.3 326 54.3
BraA04t18796Z Brassica rapa HOM05D000073 ORTHO05D000033 1.6e-90 337.0 331 53.8
Ca_01441_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 2.7e-90 336.3 289 59.2
Phvul.005G028500 Phaseolus vulgaris HOM05D005212 ORTHO05D006353 2.7e-90 336.3 331 55.3
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 7.8e-90 334.7 315 54.3
DCAR_014725 Daucus carota HOM05D005212 ORTHO05D006353 2.3e-89 333.2 326 54.3
Sed0020748 Sechium edule HOM05D005212 ORTHO05D006353 6.6e-89 331.6 331 54.4
Sabra16G0312600 Salix brachista HOM05D005212 ORTHO05D006353 8.6e-89 331.3 355 51.5
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 1.5e-88 330.5 319 53.9
Dinv36246 Davidia involucrata HOM05D005212 ORTHO05D006353 1.5e-88 330.5 294 60.2
Eucgr.H01942 Eucalyptus grandis HOM05D005212 ORTHO05D006353 2.5e-88 329.7 342 52.6
BcaB06g29383 Brassica carinata HOM05D005212 ORTHO05D006353 3.3e-88 329.3 325 52.3
Ah.11g044490 Amaranthus hybridus HOM05D005212 ORTHO05D006353 4.3e-88 328.9 330 53.6
Aa31LG1G21440 Aethionema arabicum HOM05D005212 ORTHO05D006353 7.3e-88 328.2 334 54.2
Carub.0004s2707 Capsella rubella HOM05D005212 ORTHO05D006353 1.2e-87 327.4 326 53.1
Oeu063592.1 Olea europaea HOM05D005212 ORTHO05D006353 8.0e-87 324.7 289 61.2
MSTRG.13603 Avicennia marina HOM05D005212 ORTHO05D006353 5.2e-86 322.0 218 71.6
Sc10g0005560 Simmondsia chinensis HOM05D005212 ORTHO05D006353 3.4e-85 319.3 288 56.6
Dinv28041 Davidia involucrata HOM05D005212 ORTHO05D006353 7.0e-83 311.6 249 63.9
CsaV3_5G028340 Cucumis sativus L. HOM05D005212 ORTHO05D006353 1.2e-82 310.8 331 51.7
FAN07G0183 Fragaria x ananassa HOM05D005212 ORTHO05D006353 2.7e-82 309.7 269 59.9
Manes.15G130900 Manihot esculenta HOM05D005212 ORTHO05D006353 1.1e-80 304.3 300 54.7
AUR62008760 Chenopodium quinoa HOM05D005212 ORTHO05D006353 4.3e-80 302.4 325 51.1
FAN12G1848 Fragaria x ananassa HOM05D005212 ORTHO05D006353 4.7e-79 298.9 294 53.4
HPP92_020815 Vanilla planifolia HOM05D005212 ORTHO05D006353 2.6e-77 293.1 325 49.5
FAN22G0397 Fragaria x ananassa HOM05D005212 ORTHO05D006353 4.4e-77 292.4 317 51.4
PSO339G5759 Papaver somniferum HOM05D005212 ORTHO05D006353 4.4e-77 292.4 342 49.1
Os03g0853900 Oryza sativa ssp. japonica HOM05D005212 ORTHO05D006353 3.2e-75 286.2 346 46.0
PSO017G4317 Papaver somniferum HOM05D005212 ORTHO05D006353 5.4e-75 285.4 344 49.1
FAN17G0532 Fragaria x ananassa HOM05D005212 ORTHO05D006353 9.2e-75 284.6 315 50.8
PSO478G2757 Papaver somniferum HOM05D005212 ORTHO05D006353 2.7e-74 283.1 342 47.1
ClCG01G006340 Citrullus lanatus HOM05D005212 ORTHO05D006353 6.6e-73 278.5 355 45.9
Sed0012238 Sechium edule HOM05D005212 ORTHO05D006353 2.5e-72 276.6 233 59.2
BcaC01g05169 Brassica carinata HOM05D005212 ORTHO05D006353 6.8e-70 268.5 282 54.3
VMungo1080G0912 Vigna mungo HOM05D005212 ORTHO05D006353 6.8e-70 268.5 314 49.7
ATR0829G227 Amborella trichopoda HOM05D005212 ORTHO05D006353 1.2e-69 267.7 328 48.5
Zm00001eb210590 Zea mays HOM05D005212 ORTHO05D006353 1.2e-69 267.7 279 49.1
PSO384G3589 Papaver somniferum HOM05D005212 ORTHO05D006353 1.4e-67 260.8 357 44.3
MELO3C005296.2 Cucumis melo HOM05D005212 ORTHO05D006353 4.1e-67 259.2 325 45.8
Cc04_g08850 Coffea canephora HOM05D005212 ORTHO05D006353 6.6e-65 251.9 172 72.7
Hund05206 Selenicereus undatus HOM05D005212 ORTHO05D006353 8.6e-65 251.5 277 51.6
AUR62025478 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.2e-63 247.7 215 55.8
AagrBONN_evm.TU.Sc2ySwM_344.3756 Anthoceros agrestis HOM05D005212 ORTHO05D006353 2.8e-63 246.5 277 48.7
Mapoly0006s0099 Marchantia polymorpha HOM05D005212 ORTHO05D006353 6.8e-62 241.9 275 46.5
Ca_09937_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 2.6e-61 240.0 231 58.0
Ca_09949_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 2.6e-61 240.0 231 58.0
AUR62014219 Chenopodium quinoa HOM05D005212 ORTHO05D006353 4.9e-60 235.7 289 46.0
CiPaw.06G048200 Carya illinoinensis HOM05D005212 ORTHO05D006353 8.4e-60 235.0 323 45.2
SMO334G0102 Selaginella moellendorffii HOM05D005212 ORTHO05D006353 1.4e-59 234.2 242 47.9
BcaNung07052 Brassica carinata HOM05D005212 ORTHO05D006353 7.1e-59 231.9 325 41.2
Thhalv10014438m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 7.1e-59 231.9 232 57.3
BolC3t15307H Brassica oleracea HOM05D005212 ORTHO05D006353 7.8e-58 228.4 209 57.4
Pp3c25_10280 Physcomitrium patens HOM05D005212 ORTHO05D006353 7.8e-58 228.4 292 42.1
AUR62014218 Chenopodium quinoa HOM05D005212 ORTHO05D006353 2.4e-51 206.8 244 45.5
C03p29590 Brassica napus HOM05D005212 ORTHO05D006353 1.6e-50 204.1 214 52.8
BcaB01g03308 Brassica carinata HOM05D005212 ORTHO05D006353 8.7e-49 198.4 277 42.2
Cpa.g.sc1084.4 Carica papaya HOM05D005212 ORTHO05D006353 1.3e-47 194.5 121 70.2
COL.COLO4_35970 Corchorus olitorius HOM05D005212 ORTHO05D006353 1.6e-47 194.1 175 54.3
AT5G03830 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 2.0e-45 187.2 247 46.6
unitig_22.g5595 Utricularia gibba HOM05D005212 ORTHO05D006353 1.9e-43 180.6 182 54.4
AL6G13400 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 2.1e-42 177.2 284 41.5
CDE04G0882 Ceratophyllum demersum HOM05D005212 ORTHO05D006353 1.0e-41 174.9 148 59.5
Hund24107 Selenicereus undatus HOM05D005212 ORTHO05D006353 3.9e-41 172.9 130 63.8
AUR62018080 Chenopodium quinoa HOM05D005212 ORTHO05D006353 8.7e-41 171.8 276 38.0
Cc04_g08860 Coffea canephora HOM05D005212 ORTHO05D006353 1.9e-40 170.6 164 57.3
MCO05G230 Micromonas commoda HOM05D005212 ORTHO05D006353 1.0e-36 158.3 249 36.9
CBR_g30204 Chara braunii HOM05D000019 ORTHO05D000353 1.3e-33 147.9 148 50.7
Cre03.g200991 Chlamydomonas reinhardtii HOM05D005212 ORTHO05D006353 3.3e-32 143.3 271 32.5
SEGI_04595 Sequoiadendron giganteum HOM05D005212 ORTHO05D006353 8.2e-31 138.7 159 46.5
Thhalv10015472m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 3.1e-30 136.7 154 51.3
AUR62014216 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.1e-27 128.3 200 40.0
unitig_22.g5596 Utricularia gibba HOM05D005212 ORTHO05D006353 4.2e-27 126.3 79 74.7
Peaxi162Scf00376g00010 Petunia axillaris HOM05D005212 ORTHO05D006353 1.8e-25 120.9 175 45.1
Sabra11G0142300 Salix brachista HOM05D005212 ORTHO05D006353 5.7e-24 115.9 78 65.4
Cfa023609 Carpinus fangiana HOM05D005212 ORTHO05D006353 1.1e-16 91.7 188 30.3
Aqoxy6G02632 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 6.3e-15 85.9 60 71.7
PRCOL_00004527 Prasinoderma coloniale HOM05D005212 ORTHO05D006353 1.8e-09 67.8 188 29.8
ATR0594G067 Amborella trichopoda HOM05D005212 ORTHO05D006353 2.0e-08 64.3 92 40.2
Ca_15863_v3 Cicer arietinum L. HOM05D000681 ORTHO05D011778 2.8e-07 60.5 51 54.9
Peaxi162Scf00376g00009 Petunia axillaris HOM05D005212 ORTHO05D006353 3.7e-07 60.1 31 80.6


User provided reference genes

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