Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G457.4 Capsicum annuum HOM05D003881 ORTHO05D004343 0.0e+00 2030.0 1093 100.0
Nitab4.5_0000343g0070 Nicotiana tabacum HOM05D003881 ORTHO05D004343 0.0e+00 1650.6 1135 79.1
Nitab4.5_0001488g0030 Nicotiana tabacum HOM05D003881 ORTHO05D004343 0.0e+00 1638.2 1048 85.2
CSS0040077 Camellia sinensis var. sinensis HOM05D003881 ORTHO05D004343 0.0e+00 1620.9 1091 78.5
Nn8g38678 Nelumbo nucifera HOM05D003881 ORTHO05D004343 0.0e+00 1598.9 1091 77.5
TAR383G1047 Trochodendron aralioides HOM05D003881 ORTHO05D004343 0.0e+00 1587.0 1091 77.5
Dinv42377 Davidia involucrata HOM05D003881 ORTHO05D004343 0.0e+00 1586.6 1091 78.6
ECA232G2980 Erigeron canadensis HOM05D003881 ORTHO05D004343 0.0e+00 1567.7 1086 78.0
Ca_26333_v3 Cicer arietinum L. HOM05D003881 ORTHO05D004343 0.0e+00 1562.4 1078 77.4
HanXRQChr12g0354081 Helianthus annuus HOM05D003881 ORTHO05D004343 0.0e+00 1562.4 1089 76.8
MSTRG.26461 Avicennia marina HOM05D003881 ORTHO05D004343 0.0e+00 1561.2 1089 77.4
Rhsim03G0228800 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1560.8 1090 75.4
TWI34G0082 Tripterygium wilfordii HOM05D003881 ORTHO05D004343 0.0e+00 1555.4 1076 75.5
CsaV3_1G040850 Cucumis sativus L. HOM05D003881 ORTHO05D004343 0.0e+00 1554.7 1081 76.2
Lj7A685T51 Lonicera japonica HOM05D003881 ORTHO05D004343 0.0e+00 1554.7 978 81.1
Rhsim01G0044500 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1547.7 1141 72.7
Dinv25567 Davidia involucrata HOM05D003881 ORTHO05D004343 0.0e+00 1547.3 1090 76.1
arahy.Tifrunner.gnm1.ann1.3W29E4 Arachis hypogaea HOM05D003881 ORTHO05D004343 0.0e+00 1543.5 1094 75.6
MELO3C015512.2 Cucumis melo HOM05D003881 ORTHO05D004343 0.0e+00 1542.3 1080 75.6
arahy.Tifrunner.gnm1.ann1.13CNWC Arachis hypogaea HOM05D003881 ORTHO05D004343 0.0e+00 1541.2 1078 76.3
GSVIVG01015096001 Vitis vinifera HOM05D003881 ORTHO05D004343 0.0e+00 1540.8 1090 76.3
CANSAT56G1084 Cannabis sativa HOM05D003881 ORTHO05D004343 0.0e+00 1539.6 1088 75.2
Prupe.7G201100 Prunus persica HOM05D003881 ORTHO05D004343 0.0e+00 1537.3 1116 73.2
Psat1g133400 Pisum sativum HOM05D003881 ORTHO05D004343 0.0e+00 1536.2 1078 75.7
Oeu018066.1 Olea europaea HOM05D003881 ORTHO05D004343 0.0e+00 1531.2 1010 78.6
Sed0009854 Sechium edule HOM05D003881 ORTHO05D004343 0.0e+00 1529.2 1094 75.1
Potri.006G143300 Populus trichocarpa HOM05D003881 ORTHO05D004343 0.0e+00 1527.3 1115 73.8
Aqoxy5G02361 Aquilegia oxysepala HOM05D003881 ORTHO05D004343 0.0e+00 1522.3 1087 74.7
CiPaw.03G207700 Carya illinoinensis HOM05D003881 ORTHO05D004343 0.0e+00 1522.3 1096 73.8
Lsat_1_v5_gn_5_141221 Lactuca sativa HOM05D003881 ORTHO05D004343 0.0e+00 1521.5 1117 75.1
Lj6g0005202 Lotus japonicus HOM05D003881 ORTHO05D004343 0.0e+00 1520.8 1079 75.5
Sabra06G0112200 Salix brachista HOM05D003881 ORTHO05D004343 0.0e+00 1518.4 1118 73.8
Sabra06G0113500 Salix brachista HOM05D003881 ORTHO05D004343 0.0e+00 1518.4 1118 73.8
MBI19_g11836_MAGBIO Magnolia biondii HOM05D003881 ORTHO05D004343 0.0e+00 1514.6 1129 72.0
Phvul.009G228100 Phaseolus vulgaris HOM05D003881 ORTHO05D004343 0.0e+00 1511.5 1080 75.0
Actinidia29923 Actinidia chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1510.0 1064 78.3
Lalb_Chr11g0074291 Lupinus albus HOM05D003881 ORTHO05D004343 0.0e+00 1510.0 1078 74.2
Medtr2g041420 Medicago truncatula HOM05D003881 ORTHO05D004343 0.0e+00 1509.2 1103 73.2
DCAR_031930 Daucus carota HOM05D003881 ORTHO05D004343 0.0e+00 1500.0 1096 75.1
Glyma.09G068600 Glycine max HOM05D003881 ORTHO05D004343 0.0e+00 1500.0 1095 74.1
Atru.chr7.1693 Acer truncatum HOM05D003881 ORTHO05D004343 0.0e+00 1498.4 1108 73.8
ClCG03G015190 Citrullus lanatus HOM05D003881 ORTHO05D004343 0.0e+00 1496.5 1081 74.0
Eucgr.C00824 Eucalyptus grandis HOM05D003881 ORTHO05D004343 0.0e+00 1495.3 1115 72.7
Cc06_g12030 Coffea canephora HOM05D003881 ORTHO05D004343 0.0e+00 1490.7 1120 73.8
COL.COLO4_18111 Corchorus olitorius HOM05D003881 ORTHO05D004343 0.0e+00 1489.9 1120 72.8
Glyma.15G176400 Glycine max HOM05D003881 ORTHO05D004343 0.0e+00 1489.2 1080 73.8
Migut.L01552 Erythranthe guttata HOM05D003881 ORTHO05D004343 0.0e+00 1488.4 1108 73.3
Rhsim01G0044300 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1482.6 1121 71.6
FAN26G0375 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1481.1 1111 71.7
FAN19G1850 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1477.2 1107 71.5
Manes.16G096500 Manihot esculenta HOM05D003881 ORTHO05D004343 0.0e+00 1474.5 965 77.9
Cfa003017 Carpinus fangiana HOM05D003881 ORTHO05D004343 0.0e+00 1474.1 1096 71.8
Ciclev10007295m.g Citrus clementina HOM05D003881 ORTHO05D004343 0.0e+00 1466.8 1113 71.8
SGA_v2.0_scaffold21G09481 Striga asiatica HOM05D003881 ORTHO05D004343 0.0e+00 1466.1 1111 72.5
TPR.G28668 Trifolium pratense HOM05D003881 ORTHO05D004343 0.0e+00 1466.1 1067 73.5
FvH4_1g08430 Fragaria vesca HOM05D003881 ORTHO05D004343 0.0e+00 1462.2 1107 70.7
Thecc.09G079000 Theobroma cacao HOM05D003881 ORTHO05D004343 0.0e+00 1461.8 892 81.8
FAN26G1433 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1461.4 1151 69.2
FAN28G2111 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1457.6 1108 70.7
Gorai.001G015300 Gossypium raimondii HOM05D003881 ORTHO05D004343 0.0e+00 1452.2 893 80.9
Gohir.A07G014800 Gossypium hirsutum HOM05D003881 ORTHO05D004343 0.0e+00 1451.8 893 80.9
Gohir.D07G014500 Gossypium hirsutum HOM05D003881 ORTHO05D004343 0.0e+00 1450.3 893 80.7
MD02G1088500 Malus domestica HOM05D003881 ORTHO05D004343 0.0e+00 1449.5 1118 69.7
Haze_25994 Corylus avellana HOM05D003881 ORTHO05D004343 0.0e+00 1445.3 1140 69.2
AL3G43760 Arabidopsis lyrata HOM05D003881 ORTHO05D004343 0.0e+00 1442.9 1113 71.1
Sc14g0000600 Simmondsia chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1434.9 1106 70.7
PGR142G3183 Punica granatum HOM05D003881 ORTHO05D004343 0.0e+00 1434.1 1082 70.7
RcHm_v2.0_Chr2g0094531 Rosa chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1432.5 1111 69.7
THA.LOC104815327 Tarenaya hassleriana HOM05D003881 ORTHO05D004343 0.0e+00 1432.2 959 74.9
Sp3g24670 Schrenkiella parvula HOM05D003881 ORTHO05D004343 0.0e+00 1431.0 970 73.7
PSO724G0120 Papaver somniferum HOM05D003881 ORTHO05D004343 0.0e+00 1430.6 1068 73.2
QL11p000475 Quercus lobata HOM05D003881 ORTHO05D004343 0.0e+00 1425.6 1201 66.3
Carub.0003s2725 Capsella rubella HOM05D003881 ORTHO05D004343 0.0e+00 1423.7 970 73.7
PSO135G0960 Papaver somniferum HOM05D003881 ORTHO05D004343 0.0e+00 1423.7 1062 72.9
BcaB08g34515 Brassica carinata HOM05D003881 ORTHO05D004343 0.0e+00 1420.6 970 73.3
Thhalv10002377m.g Eutrema salsugineum HOM05D003881 ORTHO05D004343 0.0e+00 1414.4 1094 69.7
C03p55630 Brassica napus HOM05D003881 ORTHO05D004343 0.0e+00 1411.0 970 73.1
BolC3t17840H Brassica oleracea HOM05D003881 ORTHO05D004343 0.0e+00 1411.0 970 73.1
A03p44780 Brassica napus HOM05D003881 ORTHO05D004343 0.0e+00 1409.8 970 73.0
BraA03t13613Z Brassica rapa HOM05D003881 ORTHO05D004343 0.0e+00 1409.8 970 73.0
CDE06G1176 Ceratophyllum demersum HOM05D003881 ORTHO05D004343 0.0e+00 1409.8 1084 70.3
Haze_25986 Corylus avellana HOM05D003881 ORTHO05D004343 0.0e+00 1402.1 1140 67.9
ATR0598G033 Amborella trichopoda HOM05D003881 ORTHO05D004343 0.0e+00 1401.3 1077 71.3
Aa31sc133G100 Aethionema arabicum HOM05D003881 ORTHO05D004343 0.0e+00 1401.0 1003 72.0
Hund26018 Selenicereus undatus HOM05D003881 ORTHO05D004343 0.0e+00 1400.6 1050 70.7
Oeu041279.1 Olea europaea HOM05D003881 ORTHO05D004343 0.0e+00 1392.9 1056 70.4
Duzib168G2095 Durio zibethinus HOM05D003881 ORTHO05D004343 0.0e+00 1383.6 893 78.2
SalBow4G1287 Salvia bowleyana HOM05D003881 ORTHO05D004343 0.0e+00 1376.7 1091 70.4
SEGI_24391 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 0.0e+00 1373.6 1091 68.5
BcaC01g03143 Brassica carinata HOM05D003881 ORTHO05D004343 0.0e+00 1365.9 953 72.1
DCAR_024741 Daucus carota HOM05D003881 ORTHO05D004343 0.0e+00 1365.9 1244 63.3
AUR62028984 Chenopodium quinoa HOM05D003881 ORTHO05D004343 0.0e+00 1360.1 1102 65.8
Ah.14g084990 Amaranthus hybridus HOM05D003881 ORTHO05D004343 0.0e+00 1327.8 1107 65.5
EL10Ac8g19107 Beta vulgaris HOM05D003881 ORTHO05D004343 0.0e+00 1323.9 1210 61.8
vmacro06329 Vaccinium macrocarpon HOM05D003881 ORTHO05D004343 0.0e+00 1316.6 923 74.0
Duzib150G0508 Durio zibethinus HOM05D003881 ORTHO05D004343 0.0e+00 1312.4 1093 68.9
Solyc07g041510.3 Solanum lycopersicum HOM05D003881 ORTHO05D004343 0.0e+00 1301.2 692 94.5
Sopen07g027960 Solanum pennellii HOM05D003674 ORTHO05D004343 0.0e+00 1300.8 690 94.6
AUR62025189 Chenopodium quinoa HOM05D003881 ORTHO05D004343 0.0e+00 1278.5 949 69.7
Zm00001eb073540 Zea mays HOM05D003881 ORTHO05D004343 0.0e+00 1245.3 1099 61.1
Mapoly0010s0036 Marchantia polymorpha HOM05D003881 ORTHO05D004343 0.0e+00 1200.3 904 66.2
SMO143G0189 Selaginella moellendorffii HOM05D003881 ORTHO05D004343 0.0e+00 1180.2 956 62.4
unitig_8.g3529 Utricularia gibba HOM05D003881 ORTHO05D004343 0.0e+00 1124.4 1100 60.5
AagrBONN_evm.TU.Sc2ySwM_344.1648 Anthoceros agrestis HOM05D003881 ORTHO05D004343 0.0e+00 1116.3 1075 58.6
Peaxi162Scf00127g00019 Petunia axillaris HOM05D003881 ORTHO05D004343 0.0e+00 1095.1 690 82.2
Pp3c3_17140 Physcomitrium patens HOM05D003881 ORTHO05D004343 8.0e-272 941.0 768 60.3
Cpa.g.sc28.63 Carica papaya HOM05D003881 ORTHO05D004343 9.8e-270 934.1 659 72.4
TAR383G0903 Trochodendron aralioides HOM05D003881 ORTHO05D004343 8.5e-266 921.0 570 80.4
CARHR103800 Cardamine hirsuta HOM05D003881 ORTHO05D004343 7.5e-254 881.3 652 68.7
HPP92_007226 Vanilla planifolia HOM05D003881 ORTHO05D004343 2.6e-182 643.7 595 57.6
TAR383G0300 Trochodendron aralioides HOM05D003881 ORTHO05D004343 2.3e-178 630.6 504 72.2
Sopen07g021070 Solanum pennellii HOM05D003881 ORTHO05D004343 1.5e-174 617.8 406 91.1
Os07g0476200 Oryza sativa ssp. japonica HOM05D003881 ORTHO05D004343 7.7e-158 562.4 445 64.9
Peaxi162Scf00127g00018 Petunia axillaris HOM05D003881 ORTHO05D004343 1.0e-157 562.0 407 87.2
CARHR103810 Cardamine hirsuta HOM05D003881 ORTHO05D004343 3.5e-150 537.0 318 83.0
SEGI_36108 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 7.8e-126 456.1 450 57.3
CBR_g74629 Chara braunii HOM05D003881 ORTHO05D004343 1.9e-119 434.9 368 57.9
SHI23794 Sapria himalayana HOM05D003881 ORTHO05D004343 2.1e-91 341.7 322 58.1
MCO14G023 Micromonas commoda HOM05D003881 ORTHO05D004343 5.8e-89 333.6 1054 27.7
QL01p053501 Quercus lobata HOM05D003881 ORTHO05D004343 9.9e-89 332.8 257 67.7
QL04p095684 Quercus lobata HOM05D003881 ORTHO05D004343 2.3e-85 321.6 289 60.9
QL03p010974 Quercus lobata HOM05D003881 ORTHO05D004343 6.7e-85 320.1 300 58.7
Psat4g185720 Pisum sativum HOM05D003881 ORTHO05D004343 1.2e-81 309.3 207 75.4
Cre03.g189605 Chlamydomonas reinhardtii HOM05D003881 ORTHO05D004343 7.9e-78 296.6 1058 27.2
ATR0684G009 Amborella trichopoda HOM05D003881 ORTHO05D004343 4.5e-65 254.2 387 40.3
Zm00001eb329800 Zea mays HOM05D003881 ORTHO05D004343 5.5e-63 247.3 191 64.4
QL10p021459 Quercus lobata HOM05D000176 ORTHO05D000106 7.4e-60 236.9 134 82.8
SEGI_33062 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 5.5e-55 220.7 145 72.4
Thhalv10002929m.g Eutrema salsugineum HOM05D003881 ORTHO05D004343 7.2e-47 193.7 217 50.7
CSS0024068 Camellia sinensis var. sinensis HOM05D003881 ORTHO05D004343 1.8e-45 189.1 99 89.9
ATR0193G014 Amborella trichopoda HOM05D003881 ORTHO05D004343 2.6e-44 185.3 107 85.0
MD15G1215900 Malus domestica HOM05D003881 ORTHO05D004343 4.8e-43 181.0 266 46.2
HPP92_012481 Vanilla planifolia HOM05D003881 ORTHO05D004343 8.5e-40 170.2 149 60.4
Lsat_1_v5_gn_3_15640 Lactuca sativa HOM05D003881 ORTHO05D004343 3.2e-39 168.3 100 78.0
ATR0193G031 Amborella trichopoda HOM05D003881 ORTHO05D004343 7.2e-39 167.2 108 75.9
CBR_g74627 Chara braunii HOM05D003881 ORTHO05D004343 6.1e-38 164.1 248 39.9
Psat1g224080 Pisum sativum HOM05D003881 ORTHO05D004343 2.8e-35 155.2 89 82.0
SEGI_35060 Sequoiadendron giganteum HOM05D000021 ORTHO05D000010 2.8e-35 155.2 125 61.6
HPP92_026934 Vanilla planifolia HOM05D003881 ORTHO05D004343 1.2e-33 149.8 518 27.6
SEGI_29160 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 7.7e-33 147.1 119 58.8
ATR0684G059 Amborella trichopoda HOM05D003881 ORTHO05D004343 1.6e-30 139.4 93 75.3
PGSC0003DMG400019565 Solanum tuberosum HOM05D003881 ORTHO05D004343 2.8e-30 138.7 86 90.7
Psat0s7528g0040 Pisum sativum HOM05D003881 ORTHO05D004343 1.0e-29 136.7 170 48.8
Actinidia38472 Actinidia chinensis HOM05D003881 ORTHO05D004343 2.3e-29 135.6 261 37.2
Psat1g059560 Pisum sativum HOM05D003881 ORTHO05D004343 6.8e-29 134.0 170 48.2
HPP92_006853 Vanilla planifolia HOM05D003881 ORTHO05D004343 1.2e-28 133.3 89 77.5
Psat1g034120 Pisum sativum HOM05D003881 ORTHO05D004343 1.0e-24 120.2 106 63.2
HPP92_006870 Vanilla planifolia HOM05D003881 ORTHO05D004343 3.3e-23 115.2 118 58.5
Hma1.2p1_0528F.1_g173040 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 5.6e-23 114.4 108 59.3
Hma1.2p1_0980F.1_g243635 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 5.6e-23 114.4 108 59.3
Hma1.2p1_1385F.1_g279633 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 5.6e-23 114.4 108 59.3
vmacro22673 Vaccinium macrocarpon HOM05D003881 ORTHO05D004343 3.1e-21 108.6 289 36.7
Rhsim03G0229000 Rhododendron simsii HOM05D003881 ORTHO05D004343 3.4e-20 105.1 97 64.9
Hma1.2p1_0508F.1_g168780 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 5.8e-20 104.4 79 64.6
SEGI_23032 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 3.7e-19 101.7 67 74.6
SEGI_26438 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 8.3e-19 100.5 59 79.7
Hma1.2p1_0430F.1_g151320 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 9.2e-18 97.1 62 75.8
SEGI_15507 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.2e-17 96.7 79 59.5
SEGI_39855 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 6.0e-17 94.4 80 60.0
SEGI_11752 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.0e-16 93.6 147 40.8
TPR.G10985 Trifolium pratense HOM05D003881 ORTHO05D004343 2.5e-15 89.0 47 95.7
HPP92_028483 Vanilla planifolia HOM05D003881 ORTHO05D004343 2.5e-15 89.0 61 63.9
HPP92_012555 Vanilla planifolia HOM05D003881 ORTHO05D004343 2.1e-14 85.9 98 53.1
RcHm_v2.0_Chr5g0007121 Rosa chinensis HOM05D003881 ORTHO05D004343 2.8e-14 85.5 51 78.4
BolC7t41346H Brassica oleracea HOM05D003881 ORTHO05D004343 3.5e-09 68.6 79 46.8
CBR_g74625 Chara braunii HOM05D003881 ORTHO05D004343 3.5e-09 68.6 66 53.0
C07p09280 Brassica napus HOM05D003881 ORTHO05D004343 7.8e-09 67.4 79 45.6
ATR0193G048 Amborella trichopoda HOM05D003881 ORTHO05D004343 5.1e-08 64.7 75 46.7
Psat6g098400 Pisum sativum HOM05D003881 ORTHO05D004343 9.5e-07 60.5 87 40.2
SEGI_25641 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 3.6e-06 58.5 38 71.1
Glyma.18G270500 Glycine max HOM05D000415 ORTHO05D011841 8.1e-06 57.4 79 44.3


User provided reference genes

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