Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G454.1 Capsicum annuum HOM05D004031 ORTHO05D006678 0.0e+00 1453.0 755 100.0
Nitab4.5_0007281g0010 Nicotiana tabacum HOM05D004031 ORTHO05D006678 0.0e+00 1225.7 755 84.6
Sopen03g011490 Solanum pennellii HOM05D004031 ORTHO05D006678 0.0e+00 1202.6 754 83.7
Solyc03g053010.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 3.6e-279 964.9 644 80.9
CSS0004189 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 2.8e-276 955.3 765 66.3
Dinv24047 Davidia involucrata HOM05D004031 ORTHO05D006678 6.3e-276 954.1 721 68.4
Manes.09G038300 Manihot esculenta HOM05D004031 ORTHO05D006678 7.0e-275 950.7 762 65.9
Hma1.2p1_0124F.1_g058320 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 2.3e-270 935.6 761 65.2
vmacro22628 Vaccinium macrocarpon HOM05D004031 ORTHO05D006678 2.0e-269 932.6 793 62.7
CiPaw.10G024900 Carya illinoinensis HOM05D004031 ORTHO05D006678 3.7e-268 928.3 765 63.8
RcHm_v2.0_Chr3g0479121 Rosa chinensis HOM05D004031 ORTHO05D006678 9.1e-267 923.7 761 64.5
Cfa020139 Carpinus fangiana HOM05D004031 ORTHO05D006678 4.5e-266 921.4 762 63.8
TAR623G1150 Trochodendron aralioides HOM05D004031 ORTHO05D006678 5.9e-266 921.0 791 62.1
Oeu057586.3 Olea europaea HOM05D004031 ORTHO05D006678 3.8e-265 918.3 758 63.3
GSVIVG01033461001 Vitis vinifera HOM05D004031 ORTHO05D006678 2.1e-263 912.5 758 63.2
MSTRG.19923 Avicennia marina HOM05D004031 ORTHO05D006678 8.0e-263 910.6 753 63.9
Cc06_g15550 Coffea canephora HOM05D004031 ORTHO05D006678 3.4e-261 905.2 763 62.9
Dinv16349 Davidia involucrata HOM05D004031 ORTHO05D006678 4.4e-261 904.8 758 63.1
Prupe.7G082700 Prunus persica HOM05D004031 ORTHO05D006678 9.8e-261 903.7 762 63.8
MD12G1054100 Malus domestica HOM05D004031 ORTHO05D006678 1.3e-260 903.3 761 62.8
FvH4_6g21770 Fragaria vesca HOM05D004031 ORTHO05D006678 2.8e-260 902.1 760 63.2
MD14G1053000 Malus domestica HOM05D004031 ORTHO05D006678 1.8e-259 899.4 762 62.6
Thecc.05G175900 Theobroma cacao HOM05D004031 ORTHO05D006678 1.8e-259 899.4 760 63.2
CiPaw.09G027800 Carya illinoinensis HOM05D004031 ORTHO05D006678 4.1e-259 898.3 759 63.4
Potri.016G060500 Populus trichocarpa HOM05D004031 ORTHO05D006678 7.7e-258 894.0 762 62.7
FAN05G0520 Fragaria x ananassa HOM05D004031 ORTHO05D006678 3.7e-252 875.2 819 58.9
Lalb_Chr15g0079131 Lupinus albus HOM05D004031 ORTHO05D006678 3.7e-252 875.2 752 61.2
CANSAT64G2464 Cannabis sativa HOM05D004031 ORTHO05D006678 4.9e-252 874.8 755 61.1
PGR142G3960 Punica granatum HOM05D004031 ORTHO05D006678 2.4e-251 872.5 756 60.8
Gorai.002G155200 Gossypium raimondii HOM05D004031 ORTHO05D006678 5.4e-251 871.3 757 61.3
Gohir.D01G124700 Gossypium hirsutum HOM05D004031 ORTHO05D006678 7.0e-251 870.9 757 61.4
Rhsim03G0003600 Rhododendron simsii HOM05D004031 ORTHO05D006678 1.2e-250 870.2 780 61.8
Sc13g0002440 Simmondsia chinensis HOM05D004031 ORTHO05D006678 2.0e-250 869.4 758 61.5
Ca_08544_v3 Cicer arietinum L. HOM05D004031 ORTHO05D006678 4.5e-250 868.2 757 60.5
Glyma.03G147000 Glycine max HOM05D004031 ORTHO05D006678 5.9e-250 867.8 755 61.5
TPR.G13372 Trifolium pratense HOM05D004031 ORTHO05D006678 5.9e-250 867.8 750 60.7
TWI74G0357 Tripterygium wilfordii HOM05D004031 ORTHO05D006678 1.0e-249 867.1 762 60.6
HanXRQChr13g0398361 Helianthus annuus HOM05D004031 ORTHO05D006678 1.3e-249 866.7 766 59.8
FAN09G1850 Fragaria x ananassa HOM05D004031 ORTHO05D006678 1.7e-249 866.3 790 59.9
Gohir.A01G137300 Gossypium hirsutum HOM05D004031 ORTHO05D006678 2.9e-249 865.5 757 61.0
arahy.Tifrunner.gnm1.ann1.YX753W Arachis hypogaea HOM05D004031 ORTHO05D006678 5.0e-249 864.8 758 60.4
ECA233G4423 Erigeron canadensis HOM05D004031 ORTHO05D006678 6.6e-249 864.4 742 61.6
Lj1g0024200 Lotus japonicus HOM05D004031 ORTHO05D006678 1.9e-248 862.8 764 60.1
SGA_v2.0_scaffold105G30510 Striga asiatica HOM05D004031 ORTHO05D006678 4.3e-248 861.7 750 60.7
Eucgr.K01855 Eucalyptus grandis HOM05D004031 ORTHO05D006678 9.5e-248 860.5 754 60.5
Phvul.001G144700 Phaseolus vulgaris HOM05D004031 ORTHO05D006678 9.5e-248 860.5 755 60.8
Glyma.19G150400 Glycine max HOM05D004031 ORTHO05D006678 2.1e-247 859.4 785 59.6
Migut.J01861 Erythranthe guttata HOM05D004031 ORTHO05D006678 4.7e-247 858.2 750 60.5
Ciclev10013737m.g Citrus clementina HOM05D004031 ORTHO05D006678 8.0e-247 857.4 761 60.7
Nn7g35952 Nelumbo nucifera HOM05D004031 ORTHO05D006678 1.0e-246 857.1 789 58.4
Medtr7g093740 Medicago truncatula HOM05D004031 ORTHO05D006678 1.8e-246 856.3 757 60.5
arahy.Tifrunner.gnm1.ann1.4B2YIP Arachis hypogaea HOM05D004031 ORTHO05D006678 6.4e-244 847.8 785 58.3
Atru.chr8.1164 Acer truncatum HOM05D004031 ORTHO05D006678 1.8e-243 846.3 762 60.9
Psat3g066880 Pisum sativum HOM05D004031 ORTHO05D006678 5.0e-241 838.2 756 59.7
Sabra16G0063400 Salix brachista HOM05D004031 ORTHO05D006678 3.3e-240 835.5 759 59.3
Sed0017241 Sechium edule HOM05D004031 ORTHO05D006678 7.3e-240 834.3 748 59.1
Aqoxy1G00041 Aquilegia oxysepala HOM05D004031 ORTHO05D006678 1.6e-239 833.2 758 58.2
EL10Ac3g06876 Beta vulgaris HOM05D004031 ORTHO05D006678 1.6e-239 833.2 753 57.4
MELO3C009604.2 Cucumis melo HOM05D004031 ORTHO05D006678 2.1e-239 832.8 759 59.0
Potri.006G195000 Populus trichocarpa HOM05D004031 ORTHO05D006678 3.1e-238 828.9 759 59.0
AUR62012010 Chenopodium quinoa HOM05D004031 ORTHO05D006678 1.5e-237 826.6 754 57.8
SalBow6G5892 Salvia bowleyana HOM05D004031 ORTHO05D006678 2.2e-236 822.8 786 57.6
Lsat_1_v5_gn_6_36500 Lactuca sativa HOM05D004031 ORTHO05D006678 1.9e-235 819.7 753 58.3
Actinidia32416 Actinidia chinensis HOM05D004031 ORTHO05D006678 6.0e-234 814.7 737 60.4
Nitab4.5_0000009g0250 Nicotiana tabacum HOM05D004031 ORTHO05D006678 2.3e-233 812.8 493 87.0
FAN02G1852 Fragaria x ananassa HOM05D004031 ORTHO05D006678 3.0e-233 812.4 831 54.6
DCAR_009690 Daucus carota HOM05D004031 ORTHO05D006678 8.6e-233 810.8 776 57.7
MBI13_g29636_MAGBIO Magnolia biondii HOM05D004031 ORTHO05D006678 3.6e-231 805.4 768 56.2
Sabra06G0149700 Salix brachista HOM05D004031 ORTHO05D006678 1.4e-230 803.5 762 57.1
Peaxi162Scf00463g00518 Petunia axillaris HOM05D004031 ORTHO05D006678 3.5e-226 788.9 614 72.0
VMungo1383G1586 Vigna mungo HOM05D004031 ORTHO05D006678 2.3e-225 786.2 703 59.9
PSO339G3947 Papaver somniferum HOM05D004031 ORTHO05D006678 3.0e-225 785.8 756 55.3
PSO384G3799 Papaver somniferum HOM05D004031 ORTHO05D006678 3.1e-222 775.8 756 54.6
THA.LOC104799283 Tarenaya hassleriana HOM05D004031 ORTHO05D006678 7.6e-221 771.2 756 55.8
Lju124A22T15 Lonicera japonica HOM05D004031 ORTHO05D006678 2.2e-220 769.6 757 56.3
Lj1A1132T32 Lonicera japonica HOM05D004031 ORTHO05D006678 2.7e-218 762.7 757 56.1
AUR62015326 Chenopodium quinoa HOM05D004031 ORTHO05D006678 1.0e-217 760.8 701 58.1
ATR0598G228 Amborella trichopoda HOM05D004031 ORTHO05D006678 3.3e-216 755.7 769 53.2
AT3G12010 Arabidopsis thaliana HOM05D004031 ORTHO05D006678 4.7e-215 751.9 750 54.1
CARHR086570 Cardamine hirsuta HOM05D004031 ORTHO05D006678 1.5e-213 746.9 739 54.9
BcaB04g18697 Brassica carinata HOM05D004031 ORTHO05D006678 2.0e-213 746.5 756 54.4
Carub.0003s1135 Capsella rubella HOM05D004031 ORTHO05D006678 2.6e-213 746.1 752 54.3
Haze_20030 Corylus avellana HOM05D004031 ORTHO05D006678 4.9e-212 741.9 927 48.7
Sp3g10240 Schrenkiella parvula HOM05D004031 ORTHO05D006678 1.1e-211 740.7 745 54.5
BcaC01g04064 Brassica carinata HOM05D004031 ORTHO05D006678 1.2e-210 737.3 755 53.4
Aa31LG3G5440 Aethionema arabicum HOM05D004031 ORTHO05D006678 1.7e-209 733.4 740 53.0
HPP92_024784 Vanilla planifolia HOM05D004031 ORTHO05D006678 2.5e-208 729.6 769 52.8
C03p45440 Brassica napus HOM05D004031 ORTHO05D006678 5.4e-203 711.8 755 52.1
Os10g0400900 Oryza sativa ssp. japonica HOM05D004031 ORTHO05D006678 1.2e-202 710.7 745 50.2
BolC3t16811H Brassica oleracea HOM05D004031 ORTHO05D006678 8.1e-199 698.0 786 50.0
A03p37440 Brassica napus HOM05D004031 ORTHO05D006678 3.2e-195 686.0 755 51.4
Sed0010020 Sechium edule HOM05D004031 ORTHO05D006678 2.1e-194 683.3 762 51.7
FAN14G1892 Fragaria x ananassa HOM05D004031 ORTHO05D006678 4.0e-190 669.1 653 56.7
CDE05G0445 Ceratophyllum demersum HOM05D004031 ORTHO05D006678 8.4e-188 661.4 753 49.4
Hma1.2p1_0124F.1_g058310 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 2.6e-181 639.8 434 72.4
Pp3c6_28540 Physcomitrium patens HOM05D004031 ORTHO05D006678 7.9e-178 628.2 743 46.2
unitig_21.g20577 Utricularia gibba HOM05D004031 ORTHO05D006678 5.1e-177 625.5 700 51.7
BcaC05g29296 Brassica carinata HOM05D004031 ORTHO05D006678 3.4e-173 612.8 762 48.8
C05p55790 Brassica napus HOM05D004031 ORTHO05D006678 3.4e-173 612.8 762 48.8
BolC5t34246H Brassica oleracea HOM05D004031 ORTHO05D006678 3.4e-173 612.8 762 48.8
BraA03t12904Z Brassica rapa HOM05D004031 ORTHO05D006678 2.2e-172 610.1 720 49.3
Mapoly0005s0167 Marchantia polymorpha HOM05D004031 ORTHO05D006678 4.8e-167 592.4 831 42.0
AL3G23620 Arabidopsis lyrata HOM05D004031 ORTHO05D006678 5.0e-164 582.4 613 53.8
CsaV3_3G038610 Cucumis sativus L. HOM05D004031 ORTHO05D006678 2.2e-159 567.0 547 56.9
Zm00001eb048600 Zea mays HOM05D004031 ORTHO05D006678 5.2e-153 545.8 593 49.6
ClCG10G017700 Citrullus lanatus HOM05D004031 ORTHO05D006678 1.2e-152 544.7 400 68.0
QL07p024699 Quercus lobata HOM05D004031 ORTHO05D006678 8.2e-151 538.5 511 58.9
SMO143G0277 Selaginella moellendorffii HOM05D004031 ORTHO05D006678 3.1e-150 536.6 737 42.7
Aa31LG3G5500 Aethionema arabicum HOM05D004031 ORTHO05D006678 3.4e-144 516.5 455 57.4
Thhalv10020623m.g Eutrema salsugineum HOM05D004031 ORTHO05D006678 8.8e-137 491.9 549 53.4
SEGI_16646 Sequoiadendron giganteum HOM05D004031 ORTHO05D006678 2.9e-111 407.1 583 42.9
QL07p024684 Quercus lobata HOM05D004031 ORTHO05D006678 3.9e-108 396.7 260 73.1
SHI31751 Sapria himalayana HOM05D004031 ORTHO05D006678 6.4e-95 352.8 521 44.0
Psat7g023080 Pisum sativum HOM05D004031 ORTHO05D006678 3.1e-73 280.8 363 45.2
Cpa.g.c40176 Carica papaya HOM05D004031 ORTHO05D006678 4.6e-69 266.9 235 62.1
Cpa.g.sc85.42 Carica papaya HOM05D004031 ORTHO05D006678 4.6e-69 266.9 194 66.5
Peaxi162Scf00463g00519 Petunia axillaris HOM05D004031 ORTHO05D006678 1.3e-68 265.4 141 88.7
Solyc03g053000.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 1.3e-68 265.4 141 90.8
TAR623G0223 Trochodendron aralioides HOM05D004031 ORTHO05D006678 2.0e-64 251.5 173 73.4
Nitab4.5_0000009g0260 Nicotiana tabacum HOM05D004031 ORTHO05D011186 3.6e-61 240.7 134 86.6
CSS0030127 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 9.7e-51 206.1 143 69.2
CSS0049250 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 8.0e-45 186.4 118 75.4
SHI31745 Sapria himalayana HOM05D004031 ORTHO05D006678 1.3e-39 169.1 143 55.2
CSS0030002 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 1.9e-38 165.2 114 67.5
Psat4g142720 Pisum sativum HOM05D003784 ORTHO05D004345 1.5e-35 155.6 99 72.7
CBR_g32657 Chara braunii HOM05D004031 ORTHO05D006678 2.9e-31 141.4 216 36.6
CBR_g44463 Chara braunii HOM05D000019 ORTHO05D000002 5.0e-31 140.6 154 46.8
Psat4g142800 Pisum sativum HOM05D003784 ORTHO05D004345 6.1e-29 133.7 86 69.8
PRCOL_00003629 Prasinoderma coloniale HOM05D004031 ORTHO05D006678 1.3e-26 125.9 339 29.5
Nn3g18463 Nelumbo nucifera HOM05D004031 ORTHO05D006678 1.2e-24 119.4 74 73.0
BcaB06g25555 Brassica carinata HOM05D004031 ORTHO05D006678 4.5e-24 117.5 103 57.3
Aa31LG3G5510 Aethionema arabicum HOM05D004031 ORTHO05D006678 1.3e-23 115.9 91 60.4
Cre08.g370250 Chlamydomonas reinhardtii HOM05D004031 ORTHO05D006678 4.7e-21 107.5 543 21.9
BolC5t34254H Brassica oleracea HOM05D004031 ORTHO05D006678 1.2e-19 102.8 88 53.4
C05p55850 Brassica napus HOM05D004031 ORTHO05D006678 7.5e-19 100.1 103 49.5
MCO13G277 Micromonas commoda HOM05D004031 ORTHO05D006678 1.4e-17 95.9 321 26.5
CBR_g32659 Chara braunii HOM05D001409 ORTHO05D001511 9.2e-17 93.2 149 34.9
Nn2g13219 Nelumbo nucifera HOM05D004031 ORTHO05D006678 3.4e-11 74.7 47 76.6
SHI31749 Sapria himalayana HOM05D003430 ORTHO05D004809 2.9e-10 71.6 58 56.9
SHI31750 Sapria himalayana HOM05D003430 ORTHO05D014065 2.0e-08 65.5 70 52.9


User provided reference genes

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