Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G443.5 Capsicum annuum HOM05D005139 ORTHO05D006125 0.0e+00 1133.2 552 100.0
Sopen12g006100 Solanum pennellii HOM05D005139 ORTHO05D006125 7.6e-311 1069.7 552 94.9
Solyc12g014320.2 Solanum lycopersicum HOM05D005139 ORTHO05D006125 4.1e-309 1063.9 552 94.6
Peaxi162Scf00000g06812 Petunia axillaris HOM05D005139 ORTHO05D006125 1.1e-293 1012.7 550 91.5
CSS0042561 Camellia sinensis var. sinensis HOM05D005139 ORTHO05D006125 1.9e-282 975.3 552 86.8
Actinidia12584 Actinidia chinensis HOM05D005139 ORTHO05D006125 3.3e-282 974.5 552 85.9
Dinv18369 Davidia involucrata HOM05D005139 ORTHO05D006125 5.3e-280 967.2 535 88.0
Manes.15G095700 Manihot esculenta HOM05D005139 ORTHO05D006125 7.6e-279 963.4 545 85.9
Atru.chr2.2128 Acer truncatum HOM05D005139 ORTHO05D006125 1.1e-277 959.5 545 84.6
SalBow7G0115 Salvia bowleyana HOM05D005139 ORTHO05D006125 1.0e-275 953.0 611 78.1
SalBow7G2844 Salvia bowleyana HOM05D005139 ORTHO05D006125 1.3e-275 952.6 611 77.9
MELO3C008916.2 Cucumis melo HOM05D005139 ORTHO05D006125 7.3e-274 946.8 543 84.3
CsaV3_4G030530 Cucumis sativus L. HOM05D005139 ORTHO05D006125 7.3e-274 946.8 543 84.3
Eucgr.F01248 Eucalyptus grandis HOM05D005139 ORTHO05D006125 1.6e-273 945.7 545 83.7
TWI38G1771 Tripterygium wilfordii HOM05D005139 ORTHO05D006125 1.6e-273 945.7 539 84.4
Potri.001G389300 Populus trichocarpa HOM05D005139 ORTHO05D006125 2.4e-272 941.8 545 83.9
Cc05_g10990 Coffea canephora HOM05D005139 ORTHO05D006125 7.6e-271 936.8 538 84.6
Ciclev10023690m.g Citrus clementina HOM05D005139 ORTHO05D006125 1.2e-268 929.5 543 83.4
Aqoxy3G02037 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 1.3e-267 926.0 540 81.7
Cfa019555 Carpinus fangiana HOM05D005139 ORTHO05D006125 5.1e-267 924.1 552 80.6
GSVIVG01014182001 Vitis vinifera HOM05D005139 ORTHO05D006125 2.5e-266 921.8 545 83.1
Ciclev10019589m.g Citrus clementina HOM05D005139 ORTHO05D006125 4.8e-265 917.5 543 83.1
Thecc.07G118200 Theobroma cacao HOM05D005139 ORTHO05D006125 2.4e-264 915.2 543 81.8
A07p43980 Brassica napus HOM05D005139 ORTHO05D006125 5.3e-264 914.1 543 80.7
BraA07t31905Z Brassica rapa HOM05D005139 ORTHO05D006125 5.3e-264 914.1 543 80.7
Lj8A148G34 Lonicera japonica HOM05D005139 ORTHO05D006125 6.9e-264 913.7 569 79.8
Sabra11G0096100 Salix brachista HOM05D005139 ORTHO05D006125 9.0e-264 913.3 583 78.6
C06p52650 Brassica napus HOM05D005139 ORTHO05D006125 4.5e-263 911.0 543 80.5
Gohir.D01G042704 Gossypium hirsutum HOM05D005139 ORTHO05D006125 5.8e-263 910.6 543 80.8
Gorai.002G053800 Gossypium raimondii HOM05D005139 ORTHO05D006125 5.8e-263 910.6 543 80.8
AL2G39160 Arabidopsis lyrata HOM05D005139 ORTHO05D006125 2.9e-262 908.3 543 81.0
Nitab4.5_0000035g0250 Nicotiana tabacum HOM05D005139 ORTHO05D006125 4.9e-262 907.5 548 84.3
BcaC08g47457 Brassica carinata HOM05D005139 ORTHO05D006125 8.4e-262 906.7 543 80.3
Gohir.A01G053400 Gossypium hirsutum HOM05D005139 ORTHO05D006125 1.1e-261 906.4 543 80.5
Migut.H02003 Erythranthe guttata HOM05D005139 ORTHO05D006125 1.4e-261 906.0 550 82.2
MD11G1264600 Malus domestica HOM05D005139 ORTHO05D006125 5.5e-261 904.0 543 81.6
Thhalv10018370m.g Eutrema salsugineum HOM05D005139 ORTHO05D006125 7.1e-261 903.7 543 80.5
Duzib213G0634 Durio zibethinus HOM05D005139 ORTHO05D006125 1.2e-260 902.9 543 80.5
Sed0024992 Sechium edule HOM05D005139 ORTHO05D006125 2.1e-260 902.1 552 79.7
Psat4g140160 Pisum sativum HOM05D005139 ORTHO05D006125 2.7e-260 901.7 536 82.3
Potri.011G108800 Populus trichocarpa HOM05D005139 ORTHO05D006125 7.9e-260 900.2 545 81.7
CiPaw.11G159600 Carya illinoinensis HOM05D005139 ORTHO05D006125 2.3e-259 898.7 545 81.1
RcHm_v2.0_Chr5g0030761 Rosa chinensis HOM05D005139 ORTHO05D006125 1.1e-258 896.3 545 79.6
BcaB03g16034 Brassica carinata HOM05D005139 ORTHO05D006125 2.5e-258 895.2 543 79.4
ECA236G1068 Erigeron canadensis HOM05D005139 ORTHO05D006125 9.6e-258 893.3 576 76.0
Sp5g33790 Schrenkiella parvula HOM05D005139 ORTHO05D006125 4.8e-257 891.0 543 79.4
Aa31LG4G2260 Aethionema arabicum HOM05D005139 ORTHO05D006125 1.4e-256 889.4 543 79.6
ClCG04G002160 Citrullus lanatus HOM05D005139 ORTHO05D006125 2.4e-256 888.6 542 80.6
HanXRQChr15g0495211 Helianthus annuus HOM05D005139 ORTHO05D006125 4.1e-256 887.9 538 80.7
Glyma.06G228700 Glycine max HOM05D005139 ORTHO05D006125 9.0e-256 886.7 545 79.8
Aqoxy4G00276 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 1.5e-255 885.9 539 78.5
COL.COLO4_17530 Corchorus olitorius HOM05D005139 ORTHO05D006125 2.6e-255 885.2 540 80.2
PSO782G2705 Papaver somniferum HOM05D005139 ORTHO05D006125 3.4e-255 884.8 536 80.6
Carub.0002s2560 Capsella rubella HOM05D005139 ORTHO05D006125 4.5e-255 884.4 539 79.4
Lsat_1_v5_gn_7_102480 Lactuca sativa HOM05D005139 ORTHO05D006125 1.0e-254 883.2 539 80.3
PSO063G5899 Papaver somniferum HOM05D005139 ORTHO05D006125 2.2e-254 882.1 536 80.4
HanXRQChr11g0331031 Helianthus annuus HOM05D005139 ORTHO05D006125 2.9e-254 881.7 538 80.1
AT1G78770 Arabidopsis thaliana HOM05D005139 ORTHO05D006125 6.5e-254 880.6 543 79.0
Phvul.011G165500 Phaseolus vulgaris HOM05D005139 ORTHO05D006125 8.4e-254 880.2 538 80.9
Lj3g0013017 Lotus japonicus HOM05D005139 ORTHO05D006125 2.5e-253 878.6 541 80.2
CANSAT35G0508 Cannabis sativa HOM05D005139 ORTHO05D006125 1.2e-252 876.3 539 79.6
Lalb_Chr03g0031181 Lupinus albus HOM05D005139 ORTHO05D006125 1.6e-252 875.9 543 79.0
CARHR072310 Cardamine hirsuta HOM05D005139 ORTHO05D006125 2.1e-252 875.5 543 78.1
Nitab4.5_0007851g0020 Nicotiana tabacum HOM05D005139 ORTHO05D006125 7.9e-252 873.6 564 79.6
THA.LOC104812316 Tarenaya hassleriana HOM05D005139 ORTHO05D006125 7.9e-252 873.6 543 78.6
Glyma.12G156300 Glycine max HOM05D005139 ORTHO05D006125 8.7e-251 870.2 544 78.7
QL08p026113 Quercus lobata HOM05D005139 ORTHO05D006125 1.3e-249 866.3 643 69.5
Medtr8g058380 Medicago truncatula HOM05D005139 ORTHO05D006125 2.2e-249 865.5 544 79.0
ATR0127G028 Amborella trichopoda HOM05D005139 ORTHO05D006125 4.1e-248 861.3 541 76.5
PGR083G0616 Punica granatum HOM05D005139 ORTHO05D006125 2.6e-247 858.6 558 76.0
FvH4_3g18210 Fragaria vesca HOM05D005139 ORTHO05D006125 1.4e-245 852.8 539 77.0
FAN21G0160 Fragaria x ananassa HOM05D005139 ORTHO05D006125 1.8e-243 845.9 538 76.4
FAN25G1917 Fragaria x ananassa HOM05D005139 ORTHO05D006125 8.8e-243 843.6 539 76.1
FAN16G0871 Fragaria x ananassa HOM05D005139 ORTHO05D006125 1.5e-242 842.8 539 76.6
FAN11G0516 Fragaria x ananassa HOM05D005139 ORTHO05D006125 3.3e-242 841.6 539 76.6
Ah.04g164210 Amaranthus hybridus HOM05D005139 ORTHO05D006125 1.3e-241 839.7 541 77.6
Sc03g0010570 Simmondsia chinensis HOM05D005139 ORTHO05D006125 8.2e-241 837.0 542 74.0
arahy.Tifrunner.gnm1.ann1.J0RB3X Arachis hypogaea HOM05D005139 ORTHO05D006125 1.4e-240 836.3 545 77.2
MBI06_g15765_MAGBIO Magnolia biondii HOM05D005139 ORTHO05D006125 6.9e-240 833.9 537 77.1
EL10Ac4g08361 Beta vulgaris HOM05D005139 ORTHO05D006125 9.1e-240 833.6 600 71.0
SGA_v2.0_scaffold130G34288 Striga asiatica HOM05D005139 ORTHO05D006125 1.4e-235 819.7 550 76.2
AUR62037557 Chenopodium quinoa HOM05D005139 ORTHO05D006125 5.7e-234 814.3 546 75.5
Zm00001eb399210 Zea mays HOM05D005139 ORTHO05D006125 2.0e-231 805.8 530 73.6
arahy.Tifrunner.gnm1.ann1.405FF9 Arachis hypogaea HOM05D005139 ORTHO05D006125 7.2e-229 797.3 546 74.9
unitig_26.g9517 Utricularia gibba HOM05D005139 ORTHO05D006125 4.7e-228 794.7 520 76.3
Prupe.4G161700 Prunus persica HOM05D005139 ORTHO05D006125 7.5e-226 787.3 550 73.5
Os03g0236966 Oryza sativa ssp. japonica HOM05D005139 ORTHO05D006125 1.4e-224 783.1 530 71.7
Haze_09316 Corylus avellana HOM05D005139 ORTHO05D006125 1.1e-221 773.5 533 73.0
Oeu005379.1 Olea europaea HOM05D005139 ORTHO05D006125 7.5e-218 760.8 762 56.7
Prupe.4G162300 Prunus persica HOM05D005139 ORTHO05D006125 1.9e-213 746.1 453 80.4
SHI27616 Sapria himalayana HOM05D005139 ORTHO05D006125 8.8e-211 737.3 579 65.3
DCAR_013162 Daucus carota HOM05D005139 ORTHO05D006125 3.5e-207 725.3 552 68.5
AUR62019588 Chenopodium quinoa HOM05D005139 ORTHO05D006125 1.9e-197 693.0 541 67.3
vmacro11947 Vaccinium macrocarpon HOM05D005139 ORTHO05D006125 9.5e-197 690.6 540 67.8
Hund10469 Selenicereus undatus HOM05D005139 ORTHO05D006125 1.6e-191 673.3 400 80.5
C03p92750 Brassica napus HOM05D005139 ORTHO05D006125 2.0e-191 672.9 440 74.5
TAR626G0095 Trochodendron aralioides HOM05D005139 ORTHO05D006125 4.6e-191 671.8 376 86.4
VMungo1127G1423 Vigna mungo HOM05D005139 ORTHO05D006125 4.6e-191 671.8 377 86.5
Pp3c16_8790 Physcomitrium patens HOM05D005139 ORTHO05D006125 1.3e-185 653.7 534 58.6
Mapoly0145s0019 Marchantia polymorpha HOM05D005139 ORTHO05D006125 4.9e-185 651.7 536 59.1
Ca_19229_v3 Cicer arietinum L. HOM05D005139 ORTHO05D006125 5.1e-174 615.1 371 80.1
SMO244G0086 Selaginella moellendorffii HOM05D005139 ORTHO05D006125 2.3e-166 589.7 529 54.4
Dinv15003 Davidia involucrata HOM05D005139 ORTHO05D006125 2.5e-157 559.7 389 73.0
Zm00001eb010020 Zea mays HOM05D005139 ORTHO05D006125 1.1e-152 544.3 367 71.7
AagrBONN_evm.TU.Sc2ySwM_368.2003 Anthoceros agrestis HOM05D005139 ORTHO05D006125 1.1e-149 534.3 496 54.6
SEGI_23856 Sequoiadendron giganteum HOM05D005139 ORTHO05D006125 7.6e-138 495.0 342 68.1
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 1.3e-137 494.2 490 53.9
TPR.G5739 Trifolium pratense HOM05D005139 ORTHO05D006125 7.2e-128 461.8 275 81.1
TPR.G5772 Trifolium pratense HOM05D005139 ORTHO05D006125 3.7e-124 449.5 268 81.7
MCO01G684 Micromonas commoda HOM05D005139 ORTHO05D006125 3.3e-117 426.4 625 40.2
Cpa.g.sc77.24 Carica papaya HOM05D005139 ORTHO05D006125 1.7e-113 414.1 379 60.7
MD00G1077100 Malus domestica HOM05D005139 ORTHO05D006125 4.8e-108 396.0 325 65.8
RcHm_v2.0_Chr1g0337671 Rosa chinensis HOM05D005139 ORTHO05D006125 3.4e-101 373.2 220 80.9
RcHm_v2.0_Chr3g0469831 Rosa chinensis HOM05D005139 ORTHO05D006125 2.5e-96 357.1 272 67.6
CBR_g50377 Chara braunii HOM05D005139 ORTHO05D006125 8.6e-81 305.4 401 42.4
PRCOL_00005307 Prasinoderma coloniale HOM05D005139 ORTHO05D006125 1.5e-77 294.7 601 32.6
Ciclev10023408m.g Citrus clementina HOM05D005139 ORTHO05D006125 2.9e-76 290.4 247 62.8
Potri.001G389500 Populus trichocarpa HOM05D005139 ORTHO05D006125 3.6e-71 273.5 159 81.1
MD03G1275700 Malus domestica HOM05D005139 ORTHO05D006125 1.5e-69 268.1 192 72.4
HPP92_004205 Vanilla planifolia HOM05D005139 ORTHO05D006125 1.4e-67 261.5 177 72.9
Ca_28352_v3 Cicer arietinum L. HOM05D005139 ORTHO05D006125 7.1e-67 259.2 154 82.5
Cfa023795 Carpinus fangiana HOM05D005139 ORTHO05D006125 2.1e-66 257.7 553 30.7
HPP92_004206 Vanilla planifolia HOM05D005139 ORTHO05D006125 4.6e-66 256.5 152 78.9
VMungo1127G2083 Vigna mungo HOM05D005139 ORTHO05D006125 8.6e-65 252.3 170 75.3
Ciclev10024516m.g Citrus clementina HOM05D005139 ORTHO05D006125 1.1e-62 245.4 251 55.4
BolC6t40284H Brassica oleracea HOM05D005139 ORTHO05D006125 7.6e-61 239.2 139 82.7
Cpa.g.sc77.22 Carica papaya HOM05D005139 ORTHO05D006125 1.0e-57 228.8 141 78.0
Ciclev10023736m.g Citrus clementina HOM05D005139 ORTHO05D006125 2.4e-54 217.6 152 72.4
Hund10473 Selenicereus undatus HOM05D005139 ORTHO05D006125 1.5e-53 214.9 136 76.5
Cre13.g562950 Chlamydomonas reinhardtii HOM05D005139 ORTHO05D006125 4.4e-53 213.4 819 23.9
Ciclev10023923m.g Citrus clementina HOM05D005139 ORTHO05D006125 5.8e-53 213.0 152 71.1
Sabra16G0255500 Salix brachista HOM05D005139 ORTHO05D006125 1.7e-52 211.5 191 59.2
CBR_g50375 Chara braunii HOM05D005139 ORTHO05D006125 9.3e-51 205.7 163 59.5
Haze_27412 Corylus avellana HOM05D005139 ORTHO05D006125 2.7e-50 204.1 258 42.2
Aqoxy256s002 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 1.5e-48 198.4 109 86.2
vmacro11946 Vaccinium macrocarpon HOM05D005139 ORTHO05D006125 2.8e-47 194.1 127 74.0
MD03G1275800 Malus domestica HOM05D005139 ORTHO05D006125 1.2e-34 152.1 85 88.2
Rhsim12G0175500 Rhododendron simsii HOM05D005139 ORTHO05D006125 7.4e-24 116.3 122 51.6
Rhsim02G0051300 Rhododendron simsii HOM05D005139 ORTHO05D006125 2.9e-20 104.4 63 76.2
SEGI_13361 Sequoiadendron giganteum HOM05D005139 ORTHO05D006125 3.7e-15 87.4 74 60.8
Rhsim08G0243300 Rhododendron simsii HOM05D005139 ORTHO05D006125 1.8e-14 85.1 52 67.3
CBR_g34498 Chara braunii HOM05D003088 ORTHO05D006665 7.7e-13 79.7 64 62.5
PGSC0003DMG400002563 Solanum tuberosum HOM05D003301 ORTHO05D003665 1.0e-09 69.3 279 23.3
ClCG05G009350 Citrullus lanatus HOM05D005139 ORTHO05D006125 1.5e-08 65.5 53 64.2
Rhsim02G0051500 Rhododendron simsii HOM05D005139 ORTHO05D006125 3.1e-06 57.8 60 48.3


User provided reference genes

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