Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G438.96 Capsicum annuum HOM05D004705 ORTHO05D005595 0.0e+00 1505.3 808 100.0
PGSC0003DMG400005697 Solanum tuberosum HOM05D004705 ORTHO05D005595 0.0e+00 1302.7 839 83.3
Sopen03g038820 Solanum pennellii HOM05D004705 ORTHO05D005595 0.0e+00 1277.3 840 81.8
Solyc03g119940.3 Solanum lycopersicum HOM05D004705 ORTHO05D005595 0.0e+00 1265.4 840 81.1
Peaxi162Scf00015g00532 Petunia axillaris HOM05D004705 ORTHO05D005595 0.0e+00 1184.1 855 75.2
Nitab4.5_0004817g0040 Nicotiana tabacum HOM05D004705 ORTHO05D005595 0.0e+00 1164.8 837 76.1
Dinv38075 Davidia involucrata HOM05D004705 ORTHO05D005595 9.2e-249 864.0 836 59.3
Cc04_g03760 Coffea canephora HOM05D004705 ORTHO05D005595 1.2e-248 863.6 826 58.4
vmacro16932 Vaccinium macrocarpon HOM05D004705 ORTHO05D005595 4.7e-237 825.1 820 57.4
CSS0001459 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 6.2e-237 824.7 813 58.1
CSS0020826 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 3.4e-235 818.9 813 57.7
Potri.003G058600 Populus trichocarpa HOM05D004705 ORTHO05D005595 2.3e-231 806.2 812 56.4
Oeu051920.1 Olea europaea HOM05D004705 ORTHO05D005595 5.6e-230 801.6 853 53.9
Lj5A66T57 Lonicera japonica HOM05D004705 ORTHO05D005595 3.6e-229 798.9 843 56.3
Duzib235G0494 Durio zibethinus HOM05D004705 ORTHO05D005595 4.0e-228 795.4 812 56.0
Thecc.06G077700 Theobroma cacao HOM05D004705 ORTHO05D005595 5.2e-228 795.0 816 55.3
MSTRG.20727 Avicennia marina HOM05D004705 ORTHO05D005595 1.7e-226 790.0 842 55.5
Prupe.3G077300 Prunus persica HOM05D004705 ORTHO05D005595 9.2e-225 784.3 814 55.7
QL05p026953 Quercus lobata HOM05D004705 ORTHO05D005595 6.0e-224 781.6 806 55.0
FAN09G0848 Fragaria x ananassa HOM05D004705 ORTHO05D005595 1.3e-223 780.4 814 55.7
FvH4_6g30700 Fragaria vesca HOM05D004705 ORTHO05D005595 1.7e-223 780.0 814 55.7
ECA247G3649 Erigeron canadensis HOM05D004705 ORTHO05D005595 3.0e-223 779.2 822 54.3
RcHm_v2.0_Chr2g0137071 Rosa chinensis HOM05D004705 ORTHO05D005595 8.6e-223 777.7 812 54.9
HanXRQChr02g0032571 Helianthus annuus HOM05D004705 ORTHO05D005595 4.3e-222 775.4 813 56.1
Dinv30551 Davidia involucrata HOM05D004705 ORTHO05D005595 7.3e-222 774.6 803 56.8
RhsimUnG0009400 Rhododendron simsii HOM05D004705 ORTHO05D005595 2.8e-221 772.7 864 52.7
Cfa002032 Carpinus fangiana HOM05D004705 ORTHO05D005595 4.7e-221 771.9 809 55.3
SGA_v2.0_scaffold153G36966 Striga asiatica HOM05D004705 ORTHO05D005595 6.2e-221 771.5 818 55.9
Gohir.A02G124100 Gossypium hirsutum HOM05D004705 ORTHO05D005595 8.1e-221 771.2 813 54.5
DCAR_025463 Daucus carota HOM05D004705 ORTHO05D005595 4.0e-220 768.8 835 53.2
FAN02G3197 Fragaria x ananassa HOM05D004705 ORTHO05D005595 4.0e-220 768.8 812 54.9
Rhsim12G0195000 Rhododendron simsii HOM05D004705 ORTHO05D005595 1.2e-219 767.3 864 52.4
Haze_16487 Corylus avellana HOM05D004705 ORTHO05D005595 3.4e-219 765.8 814 54.2
Ciclev10024977m.g Citrus clementina HOM05D004705 ORTHO05D005595 9.9e-219 764.2 824 54.2
FAN05G0816 Fragaria x ananassa HOM05D004705 ORTHO05D005595 9.9e-219 764.2 813 54.5
Manes.04G119400 Manihot esculenta HOM05D004705 ORTHO05D005595 8.4e-218 761.1 812 55.7
Oeu000022.1 Olea europaea HOM05D004705 ORTHO05D005595 1.4e-217 760.4 839 53.5
Gohir.D03G064900 Gossypium hirsutum HOM05D004705 ORTHO05D005595 2.4e-217 759.6 853 52.4
ClCG07G012910 Citrullus lanatus HOM05D004705 ORTHO05D005595 3.2e-217 759.2 810 53.5
MD17G1201400 Malus domestica HOM05D004705 ORTHO05D005595 1.2e-216 757.3 817 54.1
Gorai.002G057500 Gossypium raimondii HOM05D004705 ORTHO05D005595 1.6e-216 756.9 853 52.3
TAR626G1984 Trochodendron aralioides HOM05D004705 ORTHO05D005595 2.7e-216 756.1 824 53.3
FAN14G4493 Fragaria x ananassa HOM05D004705 ORTHO05D005595 6.0e-216 755.0 784 55.7
MELO3C012944.2 Cucumis melo HOM05D004705 ORTHO05D005595 1.7e-215 753.4 814 53.4
Atru.chr1.3167 Acer truncatum HOM05D004705 ORTHO05D005595 6.6e-215 751.5 809 53.3
Duzib160G0698 Durio zibethinus HOM05D004705 ORTHO05D005595 8.7e-215 751.1 785 55.3
CANSAT56G4120 Cannabis sativa HOM05D004705 ORTHO05D005595 3.3e-214 749.2 819 54.9
Nitab4.5_0000410g0340 Nicotiana tabacum HOM05D004705 ORTHO05D005595 1.3e-213 747.3 437 85.6
CsaV3_3G026670 Cucumis sativus L. HOM05D004705 ORTHO05D005595 2.1e-213 746.5 808 54.6
Glyma.15G011700 Glycine max HOM05D004705 ORTHO05D005595 8.1e-213 744.6 832 52.3
GSVIVG01017208001 Vitis vinifera HOM05D004705 ORTHO05D005595 2.0e-211 740.0 809 54.6
MSTRG.17159 Avicennia marina HOM05D004705 ORTHO05D005595 2.6e-211 739.6 829 52.0
Lsat_1_v5_gn_1_33801 Lactuca sativa HOM05D004705 ORTHO05D005595 4.9e-210 735.3 830 52.8
CiPaw.01G242500 Carya illinoinensis HOM05D004705 ORTHO05D005595 8.4e-210 734.6 814 52.9
Sed0012410 Sechium edule HOM05D004705 ORTHO05D005595 1.1e-209 734.2 814 53.2
Potri.001G175500 Populus trichocarpa HOM05D004705 ORTHO05D005595 2.7e-208 729.6 803 53.5
SalBow5G4930 Salvia bowleyana HOM05D004705 ORTHO05D005595 1.7e-207 726.9 735 56.1
TWI75G0140 Tripterygium wilfordii HOM05D004705 ORTHO05D005595 2.3e-207 726.5 813 51.7
Nn8g39334 Nelumbo nucifera HOM05D004705 ORTHO05D005595 4.8e-205 718.8 811 52.0
Aqoxy7G01953 Aquilegia oxysepala HOM05D004705 ORTHO05D005595 1.4e-204 717.2 833 51.4
PGR031G3493 Punica granatum HOM05D004705 ORTHO05D005595 9.0e-204 714.5 805 52.9
Lj3g0018532 Lotus japonicus HOM05D004705 ORTHO05D005595 1.2e-203 714.1 796 52.6
TAR383G1056 Trochodendron aralioides HOM05D004705 ORTHO05D005595 3.4e-203 712.6 823 51.0
Phvul.005G173800 Phaseolus vulgaris HOM05D004705 ORTHO05D005595 9.9e-203 711.1 819 51.0
Glyma.13G362100 Glycine max HOM05D004705 ORTHO05D005595 2.9e-202 709.5 818 51.2
Medtr2g102680 Medicago truncatula HOM05D004705 ORTHO05D005595 3.5e-200 702.6 803 52.4
Manes.11G049500 Manihot esculenta HOM05D004705 ORTHO05D005595 1.9e-198 696.8 663 57.6
EL10Ac9g21966 Beta vulgaris HOM05D004705 ORTHO05D005595 4.3e-198 695.7 818 52.7
Hund00574 Selenicereus undatus HOM05D004705 ORTHO05D005595 3.4e-195 686.0 810 51.2
Lalb_Chr24g0395661 Lupinus albus HOM05D004705 ORTHO05D005595 1.4e-193 680.6 674 55.9
Ca_01096_v3 Cicer arietinum L. HOM05D004705 ORTHO05D005595 1.9e-193 680.2 809 51.2
Lalb_Chr22g0351091 Lupinus albus HOM05D004705 ORTHO05D005595 3.2e-193 679.5 777 51.5
PSO017G1026 Papaver somniferum HOM05D004705 ORTHO05D005595 7.1e-193 678.3 819 49.3
Sp3g13840 Schrenkiella parvula HOM05D004705 ORTHO05D005595 7.1e-193 678.3 808 49.6
PSO170G5959 Papaver somniferum HOM05D004705 ORTHO05D005595 6.0e-192 675.2 823 49.5
TPR.G37249 Trifolium pratense HOM05D004705 ORTHO05D005595 1.3e-191 674.1 830 48.6
AUR62016408 Chenopodium quinoa HOM05D004705 ORTHO05D005595 1.3e-189 667.5 819 48.5
Aa31LG8G2800 Aethionema arabicum HOM05D004705 ORTHO05D005595 1.4e-188 664.1 813 49.6
THA.LOC104818041 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 2.6e-187 659.8 822 49.0
arahy.Tifrunner.gnm1.ann1.1G4SNU Arachis hypogaea HOM05D004705 ORTHO05D005595 6.5e-186 655.2 812 48.4
Psat5g299960 Pisum sativum HOM05D004705 ORTHO05D005595 1.9e-185 653.7 604 58.1
Carub.0003s1530 Capsella rubella HOM05D004705 ORTHO05D005595 7.2e-185 651.7 803 48.7
VMungo1080G1183 Vigna mungo HOM05D004705 ORTHO05D005595 1.3e-183 647.5 813 47.7
AUR62011594 Chenopodium quinoa HOM05D004705 ORTHO05D005595 2.3e-183 646.7 635 55.6
MBI04_g43364_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 8.7e-183 644.8 879 47.2
AL3G28180 Arabidopsis lyrata HOM05D004705 ORTHO05D005595 1.1e-182 644.4 807 48.1
A05p33830 Brassica napus HOM05D004705 ORTHO05D005595 4.3e-182 642.5 804 49.1
Cpa.g.c32383.1 Carica papaya HOM05D004705 ORTHO05D005595 4.3e-182 642.5 730 52.6
AT3G15550 Arabidopsis thaliana HOM05D004705 ORTHO05D005595 2.2e-181 640.2 804 48.1
Eucgr.J03029 Eucalyptus grandis HOM05D004705 ORTHO05D005595 2.2e-181 640.2 784 49.6
CARHR090640 Cardamine hirsuta HOM05D004705 ORTHO05D005595 3.7e-181 639.4 805 48.0
arahy.Tifrunner.gnm1.ann1.WXP04W Arachis hypogaea HOM05D004705 ORTHO05D005595 6.3e-181 638.6 807 48.0
Thhalv10020202m.g Eutrema salsugineum HOM05D004705 ORTHO05D005595 6.3e-181 638.6 805 48.4
BraA01t03898Z Brassica rapa HOM05D004705 ORTHO05D005595 8.2e-181 638.3 804 48.3
A01p38480 Brassica napus HOM05D004705 ORTHO05D005595 1.4e-180 637.5 804 48.5
BcaC09g48528 Brassica carinata HOM05D004705 ORTHO05D005595 1.8e-180 637.1 810 48.5
C01p48810 Brassica napus HOM05D004705 ORTHO05D005595 1.5e-179 634.0 810 48.5
Sabra01G0137000 Salix brachista HOM05D004705 ORTHO05D005595 2.6e-179 633.3 776 49.6
COL.COLO4_12857 Corchorus olitorius HOM05D004705 ORTHO05D005595 1.3e-178 630.9 796 49.5
BolC1t04836H Brassica oleracea HOM05D004705 ORTHO05D005595 5.0e-178 629.0 805 48.4
Sc12g0008970 Simmondsia chinensis HOM05D004705 ORTHO05D005595 5.0e-178 629.0 810 51.2
C05p51460 Brassica napus HOM05D004705 ORTHO05D005595 1.1e-177 627.9 808 47.8
unitig_26.g8885 Utricularia gibba HOM05D004705 ORTHO05D005595 7.2e-177 625.2 647 54.3
BcaC05g28954 Brassica carinata HOM05D004705 ORTHO05D005595 1.4e-175 620.9 809 47.5
BraA05t22205Z Brassica rapa HOM05D004705 ORTHO05D005595 8.8e-175 618.2 803 48.2
BcaB04g20914 Brassica carinata HOM05D004705 ORTHO05D005595 1.1e-174 617.8 806 48.5
BcaB06g29595 Brassica carinata HOM05D004705 ORTHO05D005595 4.3e-174 615.9 804 48.0
arahy.Tifrunner.gnm1.ann1.HFN88V Arachis hypogaea HOM05D004705 ORTHO05D005595 3.4e-171 606.3 778 48.5
BolC5t33833H Brassica oleracea HOM05D004705 ORTHO05D005595 6.1e-168 595.5 808 47.0
Migut.B01589 Erythranthe guttata HOM05D004705 ORTHO05D005595 9.7e-166 588.2 809 45.2
Nn2g11880 Nelumbo nucifera HOM05D004705 ORTHO05D005595 1.1e-164 584.7 666 50.6
Lalb_Chr25g0279551 Lupinus albus HOM05D004705 ORTHO05D005595 4.5e-163 579.3 765 47.3
ATR0083G057 Amborella trichopoda HOM05D004705 ORTHO05D005595 2.2e-157 560.5 852 44.2
arahy.Tifrunner.gnm1.ann1.AD4PBH Arachis hypogaea HOM05D004705 ORTHO05D005595 2.2e-154 550.4 778 45.9
Os01g0176500 Oryza sativa ssp. japonica HOM05D004705 ORTHO05D005595 1.8e-148 530.8 848 41.5
CDE01G0719 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 2.4e-148 530.4 722 45.7
Zm00001eb122560 Zea mays HOM05D004705 ORTHO05D005595 7.7e-147 525.4 842 41.3
unitig_61.g26415 Utricularia gibba HOM05D004705 ORTHO05D005595 5.2e-143 512.7 482 57.7
THA.LOC104812485 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 2.2e-133 480.7 481 51.8
Ah.01g021140 Amaranthus hybridus HOM05D004705 ORTHO05D005595 3.3e-129 466.8 808 40.8
SEGI_27484 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 5.2e-111 406.4 724 38.1
Nitab4.5_0000410g0350 Nicotiana tabacum HOM05D004705 ORTHO05D005595 1.5e-105 388.3 444 56.8
SEGI_13982 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 1.4e-100 371.7 615 39.2
MBI01_g15493_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 3.2e-100 370.5 810 34.6
Actinidia16007 Actinidia chinensis HOM05D004705 ORTHO05D005595 4.0e-95 353.6 314 58.3
AagrBONN_evm.TU.Sc2ySwM_228.3613 Anthoceros agrestis HOM05D004705 ORTHO05D005595 1.1e-92 345.5 503 41.4
Pp3c23_2990 Physcomitrium patens HOM05D004705 ORTHO05D005595 3.5e-91 340.5 480 41.5
Pp3c13_19170 Physcomitrium patens HOM05D004705 ORTHO05D005595 4.6e-91 340.1 533 41.3
Pp3c8_15560 Physcomitrium patens HOM05D004705 ORTHO05D005595 2.3e-90 337.8 481 42.0
Pp3c23_18290 Physcomitrium patens HOM05D004705 ORTHO05D005595 2.3e-82 311.2 430 41.2
Pp3c24_17130 Physcomitrium patens HOM05D004705 ORTHO05D005595 5.1e-82 310.1 469 42.0
Pp3c20_1400 Physcomitrium patens HOM05D004705 ORTHO05D005595 2.8e-80 304.3 485 38.1
Pp3c20_1403 Physcomitrium patens HOM05D004705 ORTHO05D005595 2.8e-80 304.3 485 38.1
CDE02G1329 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 1.5e-78 298.5 500 38.2
Pp3c8_22450 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.8e-74 285.0 610 33.9
Lj8C335T16 Lonicera japonica HOM05D004705 ORTHO05D005595 1.2e-70 272.3 381 47.0
MBI04_g47892_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 1.1e-68 265.8 554 44.4
SMO147G0411 Selaginella moellendorffii HOM05D004705 ORTHO05D005595 8.2e-56 223.0 195 54.4
SHI09686 Sapria himalayana HOM05D004705 ORTHO05D005595 1.2e-54 219.2 679 32.4
Actinidia08822 Actinidia chinensis HOM05D004705 ORTHO05D005595 3.5e-46 191.0 202 56.9
Actinidia16006 Actinidia chinensis HOM05D004705 ORTHO05D005595 2.6e-33 148.3 433 34.4
BcaC09g48527 Brassica carinata HOM05D004705 ORTHO05D005595 5.2e-26 124.0 90 60.0
Medtr1g107505 Medicago truncatula HOM05D004705 ORTHO05D005595 5.2e-18 97.4 71 64.8
MBI04_g47893_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 4.1e-15 87.8 208 33.2
GSVIVG01017207001 Vitis vinifera HOM05D029100 ORTHO05D016439 1.0e-13 83.2 107 42.1
unitig_26.g8886 Utricularia gibba HOM05D004705 ORTHO05D005595 7.3e-12 77.0 75 53.3
Cpa.g.c42332 Carica papaya HOM05D004705 ORTHO05D005595 5.8e-09 67.4 52 51.9
FAN08G3635 Fragaria x ananassa HOM05D004705 ORTHO05D000113 1.3e-08 66.2 63 47.6
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 1.3e-08 66.2 63 47.6
Medtr1g041460 Medicago truncatula HOM05D004705 ORTHO05D005595 4.9e-08 64.3 49 61.2
FAN21G1601 Fragaria x ananassa HOM05D000031 ORTHO05D000030 1.4e-07 62.8 50 52.0
Ah.02g118940 Amaranthus hybridus HOM05D003112 ORTHO05D005595 9.2e-07 60.1 65 49.2
FAN07G2703 Fragaria x ananassa HOM05D004705 ORTHO05D005595 6.0e-06 57.4 50 48.0


User provided reference genes

Program Settings