Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G438.72 Capsicum annuum HOM05D006908 ORTHO05D008662 1.5e-203 712.6 354 100.0
PGSC0003DMG400005687 Solanum tuberosum HOM05D006908 ORTHO05D008662 1.8e-169 599.4 339 89.7
Sopen03g039000 Solanum pennellii HOM05D006908 ORTHO05D008662 4.5e-168 594.7 340 88.5
Nitab4.5_0002308g0060 Nicotiana tabacum HOM05D006908 ORTHO05D008662 5.4e-161 571.2 321 89.1
Solyc03g120130.4 Solanum lycopersicum HOM05D006908 ORTHO05D008662 3.3e-150 535.4 344 81.7
Nitab4.5_0000671g0150 Nicotiana tabacum HOM05D006908 ORTHO05D008662 5.1e-143 511.5 322 80.1
Peaxi162Scf00015g00453 Petunia axillaris HOM05D006908 ORTHO05D008662 1.9e-134 483.0 321 77.9
Lj5C59T9 Lonicera japonica HOM05D006908 ORTHO05D008662 2.1e-112 409.8 323 64.7
Dinv38042 Davidia involucrata HOM05D006908 ORTHO05D008662 2.7e-112 409.5 321 64.2
QL05p023344 Quercus lobata HOM05D006908 ORTHO05D008662 3.0e-111 406.0 323 64.1
Rhsim08G0222000 Rhododendron simsii HOM05D006908 ORTHO05D008662 2.1e-109 399.8 338 61.8
Actinidia01807 Actinidia chinensis HOM05D006908 ORTHO05D008662 2.8e-109 399.4 337 62.3
Hma1.2p1_0323F.1_g125120 Hydrangea macrophylla HOM05D006908 ORTHO05D008662 2.8e-109 399.4 325 62.5
Oeu063957.2 Olea europaea HOM05D006908 ORTHO05D008662 2.8e-109 399.4 319 64.3
CiPaw.01G238600 Carya illinoinensis HOM05D006908 ORTHO05D008662 4.8e-109 398.7 330 62.1
SalBow2G2262 Salvia bowleyana HOM05D006908 ORTHO05D008662 6.9e-108 394.8 322 62.4
GSVIVG01017098001 Vitis vinifera HOM05D006908 ORTHO05D008662 3.4e-107 392.5 326 61.0
Cc04_g03340 Coffea canephora HOM05D006908 ORTHO05D008662 1.7e-106 390.2 329 62.6
MD17G1194300 Malus domestica HOM05D006908 ORTHO05D008662 8.4e-106 387.9 329 61.4
vmacro18903 Vaccinium macrocarpon HOM05D006908 ORTHO05D008662 1.1e-105 387.5 379 55.4
DCAR_023055 Daucus carota HOM05D006908 ORTHO05D008662 4.2e-105 385.6 323 62.8
MSTRG.11073 Avicennia marina HOM05D006908 ORTHO05D008662 5.5e-105 385.2 324 61.7
Eucgr.J02986 Eucalyptus grandis HOM05D006908 ORTHO05D008662 1.6e-104 383.6 320 61.9
Haze_16403 Corylus avellana HOM05D006908 ORTHO05D008662 2.7e-104 382.9 323 61.3
Migut.I00872 Erythranthe guttata HOM05D006908 ORTHO05D008662 7.9e-104 381.3 322 59.9
Thecc.06G089400 Theobroma cacao HOM05D006908 ORTHO05D008662 2.3e-103 379.8 336 59.2
Nn8g39204 Nelumbo nucifera HOM05D006908 ORTHO05D008662 8.7e-103 377.9 342 61.4
PSO782G4818 Papaver somniferum HOM05D006908 ORTHO05D008662 8.7e-103 377.9 326 62.3
EL10Ac9g22006 Beta vulgaris HOM05D006908 ORTHO05D008662 3.3e-102 375.9 329 59.6
ClCG07G013040 Citrullus lanatus HOM05D006908 ORTHO05D008662 4.3e-102 375.6 330 60.3
COL.COLO4_30388 Corchorus olitorius HOM05D006908 ORTHO05D008662 4.3e-102 375.6 321 60.1
Ah.01g005440 Amaranthus hybridus HOM05D006908 ORTHO05D008662 5.7e-102 375.2 332 57.8
Sabra01G0145800 Salix brachista HOM05D006908 ORTHO05D008662 7.4e-102 374.8 327 60.6
TAR626G0624 Trochodendron aralioides HOM05D006908 ORTHO05D008662 9.7e-102 374.4 361 58.7
FAN09G3067 Fragaria x ananassa HOM05D006908 ORTHO05D008662 1.3e-101 374.0 343 58.6
TPR.G37174 Trifolium pratense HOM05D006908 ORTHO05D008662 1.6e-101 373.6 339 58.1
FAN05G1986 Fragaria x ananassa HOM05D006908 ORTHO05D008662 2.8e-101 372.9 335 58.8
Gorai.006G098400 Gossypium raimondii HOM05D006908 ORTHO05D008662 3.7e-101 372.5 333 58.3
Sc10g0007370 Simmondsia chinensis HOM05D006908 ORTHO05D008662 8.2e-101 371.3 329 60.2
FvH4_6g31280 Fragaria vesca HOM05D006908 ORTHO05D008662 1.4e-100 370.5 339 59.0
Atru.chr1.3281 Acer truncatum HOM05D006908 ORTHO05D008662 6.9e-100 368.2 328 58.5
HanXRQChr02g0032801 Helianthus annuus HOM05D006908 ORTHO05D008662 1.5e-99 367.1 322 59.9
CSS0010187 Camellia sinensis var. sinensis HOM05D006908 ORTHO05D008662 3.4e-99 365.9 281 65.5
CsaV3_3G025130 Cucumis sativus L. HOM05D006908 ORTHO05D008662 7.6e-99 364.8 327 59.0
RcHm_v2.0_Chr2g0138011 Rosa chinensis HOM05D006908 ORTHO05D008662 1.0e-98 364.4 333 59.2
MELO3C012958.2 Cucumis melo HOM05D006908 ORTHO05D008662 1.7e-98 363.6 327 58.7
PSO063G2605 Papaver somniferum HOM05D006908 ORTHO05D008662 3.8e-98 362.5 326 60.4
PGR102G2040 Punica granatum HOM05D006908 ORTHO05D008662 2.5e-97 359.8 320 59.1
Duzib160G0703 Durio zibethinus HOM05D006908 ORTHO05D008662 4.2e-97 359.0 330 56.4
ECA247G1365 Erigeron canadensis HOM05D006908 ORTHO05D008662 4.2e-97 359.0 324 59.3
Lj3g0017668 Lotus japonicus HOM05D006908 ORTHO05D008662 5.5e-97 358.6 328 56.4
Lalb_Chr22g0351301 Lupinus albus HOM05D006908 ORTHO05D008662 1.2e-96 357.5 327 58.1
CANSAT56G3342 Cannabis sativa HOM05D006908 ORTHO05D008662 3.6e-96 355.9 344 55.8
Medtr2g102040 Medicago truncatula HOM05D006908 ORTHO05D008662 1.0e-95 354.4 329 57.1
Sed0021689 Sechium edule HOM05D006908 ORTHO05D008662 3.0e-95 352.8 331 57.4
AUR62042927 Chenopodium quinoa HOM05D006908 ORTHO05D008662 3.9e-95 352.4 360 54.2
Ciclev10025928m.g Citrus clementina HOM05D006908 ORTHO05D008662 1.1e-94 350.9 355 53.8
Ca_01120_v3 Cicer arietinum L. HOM05D006908 ORTHO05D008662 1.5e-94 350.5 334 56.3
Manes.11G045900 Manihot esculenta HOM05D006908 ORTHO05D008662 1.9e-94 350.1 338 55.3
Hund06614 Selenicereus undatus HOM05D006908 ORTHO05D008662 1.9e-94 350.1 328 57.0
Prupe.3G070300 Prunus persica HOM05D006908 ORTHO05D008662 4.3e-94 349.0 322 58.4
VMungo1080G1808 Vigna mungo HOM05D006908 ORTHO05D008662 1.7e-93 347.1 342 53.8
Glyma.15G014900 Glycine max HOM05D006908 ORTHO05D008662 2.2e-93 346.7 328 55.5
Phvul.005G170700 Phaseolus vulgaris HOM05D006908 ORTHO05D008662 5.3e-92 342.0 341 54.8
unitig_52.g17450 Utricularia gibba HOM05D006908 ORTHO05D008662 9.1e-92 341.3 324 54.9
arahy.Tifrunner.gnm1.ann1.0IDI1A Arachis hypogaea HOM05D006908 ORTHO05D008662 1.2e-91 340.9 323 57.0
arahy.Tifrunner.gnm1.ann1.UK934I Arachis hypogaea HOM05D006908 ORTHO05D008662 1.2e-91 340.9 323 57.0
HPP92_003725 Vanilla planifolia HOM05D006908 ORTHO05D008662 2.9e-90 336.3 324 54.0
Gohir.D09G082700 Gossypium hirsutum HOM05D006908 ORTHO05D008662 3.8e-90 335.9 333 54.7
Aqoxy7G01689 Aquilegia oxysepala HOM05D006908 ORTHO05D008662 1.1e-89 334.3 349 54.7
Potri.001G181200 Populus trichocarpa HOM05D006908 ORTHO05D008662 2.5e-89 333.2 276 62.3
CDE02G0011 Ceratophyllum demersum HOM05D006908 ORTHO05D008662 2.1e-88 330.1 322 56.2
Os06g0639300 Oryza sativa ssp. japonica HOM05D006908 ORTHO05D008662 2.0e-86 323.6 331 53.2
TWI75G1463 Tripterygium wilfordii HOM05D006908 ORTHO05D008662 2.6e-86 323.2 338 55.0
BcaC08g47592 Brassica carinata HOM05D002960 ORTHO05D003632 8.2e-85 318.2 330 51.8
SEGI_13943 Sequoiadendron giganteum HOM05D006908 ORTHO05D008662 2.0e-83 313.5 346 48.0
THA.LOC104812520 Tarenaya hassleriana HOM05D006908 ORTHO05D008662 2.0e-83 313.5 346 50.6
Gohir.A09G082800 Gossypium hirsutum HOM05D006908 ORTHO05D008662 5.9e-83 312.0 335 50.7
BcaC08g47561 Brassica carinata HOM05D006908 ORTHO05D008662 1.0e-82 311.2 326 52.1
Aa31LG4G230 Aethionema arabicum HOM05D006908 ORTHO05D008662 8.5e-82 308.1 349 49.9
AT1G79915 Arabidopsis thaliana HOM05D006908 ORTHO05D008662 2.5e-81 306.6 326 51.2
Psat5g298720 Pisum sativum HOM05D006908 ORTHO05D008662 2.5e-81 306.6 273 56.4
Thhalv10018901m.g Eutrema salsugineum HOM05D006908 ORTHO05D008662 3.2e-81 306.2 334 50.3
Zm00001eb275430 Zea mays HOM05D006908 ORTHO05D008662 3.2e-81 306.2 336 49.4
C06p54330 Brassica napus HOM05D002960 ORTHO05D003632 9.4e-81 304.7 358 47.8
BolC6t40444H Brassica oleracea HOM05D002960 ORTHO05D003632 1.6e-80 303.9 356 48.0
Carub.0002s2758 Capsella rubella HOM05D006908 ORTHO05D008662 3.6e-80 302.8 330 49.7
BraA07t32051Z Brassica rapa HOM05D006908 ORTHO05D008662 3.0e-79 299.7 338 49.7
Hma1.2p1_0323F.1_g125130 Hydrangea macrophylla HOM05D006908 ORTHO05D008662 3.0e-79 299.7 325 51.7
CARHR074570 Cardamine hirsuta HOM05D006908 ORTHO05D008662 2.0e-78 297.0 331 49.5
AUR62016450 Chenopodium quinoa HOM05D006908 ORTHO05D008662 2.0e-78 297.0 302 54.3
Sp5g35850 Schrenkiella parvula HOM05D006908 ORTHO05D008662 1.7e-77 293.9 265 55.1
Cfa002075 Carpinus fangiana HOM05D006908 ORTHO05D008662 1.8e-76 290.4 269 57.6
ATR0602G186 Amborella trichopoda HOM05D006908 ORTHO05D008662 7.7e-75 285.0 247 56.7
Mapoly0072s0004 Marchantia polymorpha HOM05D006908 ORTHO05D008662 5.2e-71 272.3 335 45.4
SHI10939 Sapria himalayana HOM05D006908 ORTHO05D008662 7.5e-70 268.5 257 53.7
A07p45490 Brassica napus HOM05D006908 ORTHO05D008662 5.9e-67 258.8 392 42.1
Cpa.g.sc0.185 Carica papaya HOM05D006908 ORTHO05D008662 5.9e-67 258.8 214 60.3
MBI15_g13424_MAGBIO Magnolia biondii HOM05D006908 ORTHO05D008662 1.9e-65 253.8 269 53.5
AUR62033073 Chenopodium quinoa HOM05D006908 ORTHO05D008662 4.2e-65 252.7 301 49.8
CSS0029579 Camellia sinensis var. sinensis HOM05D006908 ORTHO05D008662 2.7e-64 250.0 184 66.8
AagrBONN_evm.TU.Sc2ySwM_344.5185 Anthoceros agrestis HOM05D006908 ORTHO05D008662 5.2e-63 245.7 326 45.4
Lsat_1_v5_gn_1_35121 Lactuca sativa HOM05D006908 ORTHO05D008662 7.0e-60 235.3 215 58.1
Pp3c16_8290 Physcomitrium patens HOM05D006908 ORTHO05D008662 3.8e-58 229.6 357 38.9
CBR_g20274 Chara braunii HOM05D006908 ORTHO05D008662 2.0e-54 217.2 317 39.1
BcaC04g22058 Brassica carinata HOM05D006908 ORTHO05D008662 8.9e-47 191.8 331 38.4
FAN02G3381 Fragaria x ananassa HOM05D006908 ORTHO05D008662 9.5e-41 171.8 235 44.7
SGA_v2.0_scaffold37G14828 Striga asiatica HOM05D006908 ORTHO05D008662 6.2e-40 169.1 144 63.2
C09p24020 Brassica napus HOM05D006908 ORTHO05D008662 4.6e-35 152.9 183 47.0
SMO347G0515 Selaginella moellendorffii HOM05D006908 ORTHO05D008662 1.5e-33 147.9 211 42.7
Actinidia32749 Actinidia chinensis HOM05D006908 ORTHO05D008662 2.9e-21 107.1 78 70.5
BolC9t55322H Brassica oleracea HOM05D006908 ORTHO05D008662 3.9e-18 96.7 92 54.3
AL2G41640 Arabidopsis lyrata HOM05D006908 ORTHO05D008662 5.1e-18 96.3 150 40.0
Cpa.g.sc41.12 Carica papaya HOM05D006908 ORTHO05D008662 2.1e-16 90.9 81 56.8
TWI31G0384 Tripterygium wilfordii HOM05D002956 ORTHO05D008031 1.6e-08 64.7 167 27.5
EL10Ac6g15168 Beta vulgaris HOM05D006745 ORTHO05D008449 2.8e-08 63.9 197 31.0
Mapoly0041s0084 Marchantia polymorpha HOM05D006745 ORTHO05D008449 2.8e-08 63.9 162 30.2
Pp3c3_3430 Physcomitrium patens HOM05D002956 ORTHO05D008031 8.1e-08 62.4 149 32.2
Lalb_Chr09g0321491 Lupinus albus HOM05D006745 ORTHO05D008449 3.1e-07 60.5 200 27.5
SMO351G0211 Selaginella moellendorffii HOM05D001602 ORTHO05D001470 5.3e-07 59.7 167 29.9
FAN14G1268 Fragaria x ananassa HOM05D006908 ORTHO05D008662 9.0e-07 58.9 73 46.6
Gohir.A07G121300 Gossypium hirsutum HOM05D002956 ORTHO05D008031 9.0e-07 58.9 112 29.5
Gohir.D07G125600 Gossypium hirsutum HOM05D002956 ORTHO05D008031 1.2e-06 58.5 112 28.6
Gorai.001G135400 Gossypium raimondii HOM05D002956 ORTHO05D008031 1.2e-06 58.5 112 28.6
Sed0014482 Sechium edule HOM05D002956 ORTHO05D008031 1.2e-06 58.5 115 29.6
BraA07t30623Z Brassica rapa HOM05D000058 ORTHO05D000255 1.5e-06 58.2 227 26.9
Psat5g191880 Pisum sativum HOM05D002956 ORTHO05D008031 1.5e-06 58.2 91 31.9
CANSAT54G1478 Cannabis sativa HOM05D002956 ORTHO05D008031 2.0e-06 57.8 145 28.3
HanXRQChr12g0380421 Helianthus annuus HOM05D002956 ORTHO05D008031 2.0e-06 57.8 112 31.2
Zm00001eb329010 Zea mays HOM05D002956 ORTHO05D008031 2.0e-06 57.8 111 31.5
MSTRG.12436 Avicennia marina HOM05D002956 ORTHO05D008031 2.6e-06 57.4 113 31.0
MELO3C007934.2 Cucumis melo HOM05D006745 ORTHO05D008449 2.6e-06 57.4 209 26.8
Manes.02G137300 Manihot esculenta HOM05D002956 ORTHO05D008031 2.6e-06 57.4 166 27.7
AUR62003702 Chenopodium quinoa HOM05D006745 ORTHO05D008449 3.4e-06 57.0 181 29.3
Ca_25980_v3 Cicer arietinum L. HOM05D002956 ORTHO05D008031 3.4e-06 57.0 110 29.1
A09p13970 Brassica napus HOM05D006745 ORTHO05D008449 4.5e-06 56.6 162 29.0
ClCG01G019540 Citrullus lanatus HOM05D005677 ORTHO05D006966 4.5e-06 56.6 239 26.8
MD00G1134600 Malus domestica HOM05D002956 ORTHO05D008031 4.5e-06 56.6 112 31.2
AL6G39610 Arabidopsis lyrata HOM05D002553 ORTHO05D002767 5.8e-06 56.2 204 26.0
Haze_03682 Corylus avellana HOM05D006745 ORTHO05D008449 5.8e-06 56.2 198 26.8
Sc22g0002270 Simmondsia chinensis HOM05D006745 ORTHO05D008449 5.8e-06 56.2 162 31.5
AagrBONN_evm.TU.Sc2ySwM_228.3973 Anthoceros agrestis HOM05D002956 ORTHO05D008031 7.6e-06 55.8 142 30.3
CSS0006448 Camellia sinensis var. sinensis HOM05D002956 ORTHO05D008031 7.6e-06 55.8 112 31.2
CDE04G0360 Ceratophyllum demersum HOM05D002956 ORTHO05D008031 7.6e-06 55.8 93 32.3
Thecc.09G246000 Theobroma cacao HOM05D002956 ORTHO05D008031 7.6e-06 55.8 112 28.6
CsaV3_6G047410 Cucumis sativus L. HOM05D006745 ORTHO05D008449 9.9e-06 55.5 209 26.3
FvH4_3g28160 Fragaria vesca HOM05D002956 ORTHO05D008031 9.9e-06 55.5 166 25.9


User provided reference genes

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