Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G438.64 Capsicum annuum HOM05D004642 ORTHO05D005466 1.8e-211 740.0 719 100.0
Sopen03g039110 Solanum pennellii HOM05D004642 ORTHO05D005466 4.2e-144 516.2 723 68.6
Solyc03g120230.3 Solanum lycopersicum HOM05D004642 ORTHO05D005466 2.7e-143 513.5 720 69.6
Nitab4.5_0005851g0030 Nicotiana tabacum HOM05D004642 ORTHO05D005466 6.0e-135 485.7 719 59.2
Peaxi162Scf00015g00335 Petunia axillaris HOM05D004642 ORTHO05D005466 6.9e-131 472.2 733 72.6
PGSC0003DMG400002564 Solanum tuberosum HOM05D004642 ORTHO05D005466 3.0e-126 456.8 674 66.8
Nitab4.5_0000671g0060 Nicotiana tabacum HOM05D004642 ORTHO05D005466 1.1e-125 454.9 685 57.1
Actinidia08974 Actinidia chinensis HOM05D004642 ORTHO05D005466 6.4e-68 263.1 721 48.8
Cc04_g03480 Coffea canephora HOM05D004642 ORTHO05D005466 6.6e-65 253.1 681 37.4
Prupe.3G071700 Prunus persica HOM05D004642 ORTHO05D005466 1.6e-63 248.4 709 36.4
MD17G1195700 Malus domestica HOM05D004642 ORTHO05D005466 2.4e-59 234.6 721 41.7
Rhsim12G0197600 Rhododendron simsii HOM05D004642 ORTHO05D005466 4.3e-56 223.8 708 54.4
Actinidia24760 Actinidia chinensis HOM05D004642 ORTHO05D005466 5.6e-56 223.4 528 38.1
Potri.001G179600 Populus trichocarpa HOM05D004642 ORTHO05D005466 3.6e-55 220.7 696 39.2
QL05p024308 Quercus lobata HOM05D004642 ORTHO05D005466 6.8e-54 216.5 722 39.6
CiPaw.01G239700 Carya illinoinensis HOM05D004642 ORTHO05D005466 2.2e-52 211.5 718 51.3
GSVIVG01017115001 Vitis vinifera HOM05D004642 ORTHO05D005466 1.2e-50 205.7 528 45.5
FAN14G2337 Fragaria x ananassa HOM05D004642 ORTHO05D005466 1.3e-49 202.2 720 55.3
MD09G1213800 Malus domestica HOM05D004642 ORTHO05D005466 1.7e-49 201.8 698 50.3
Rhsim08G0221000 Rhododendron simsii HOM05D004642 ORTHO05D005466 2.3e-49 201.4 707 39.7
FvH4_6g31081 Fragaria vesca HOM05D004642 ORTHO05D005466 2.5e-48 198.0 719 55.1
vmacro18915 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 5.6e-48 196.8 526 33.7
Gohir.A05G129515 Gossypium hirsutum HOM05D004642 ORTHO05D005466 7.3e-48 196.4 545 33.9
RcHm_v2.0_Chr2g0137781 Rosa chinensis HOM05D004642 ORTHO05D005466 1.2e-47 195.7 715 54.7
Gorai.009G133100 Gossypium raimondii HOM05D004642 ORTHO05D005466 2.8e-47 194.5 533 33.2
Gohir.D05G129000 Gossypium hirsutum HOM05D004642 ORTHO05D005466 2.4e-46 191.4 533 34.0
Lsat_1_v5_gn_4_103580 Lactuca sativa HOM05D004642 ORTHO05D005466 4.4e-45 187.2 513 37.6
Duzib192G0922 Durio zibethinus HOM05D004642 ORTHO05D005466 9.9e-45 186.0 540 39.3
Oeu033484.1 Olea europaea HOM05D004642 ORTHO05D005466 9.9e-45 186.0 700 49.0
Gohir.A09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 1.3e-44 185.7 565 31.0
SGA_v2.0_scaffold4G01996 Striga asiatica HOM05D004642 ORTHO05D005466 1.1e-43 182.6 491 39.5
Gohir.D09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 1.4e-43 182.2 560 29.8
Thecc.06G086400 Theobroma cacao HOM05D004642 ORTHO05D005466 4.2e-43 180.6 765 40.4
Cfa002061 Carpinus fangiana HOM05D004642 ORTHO05D005466 5.4e-43 180.3 526 35.9
Duzib235G0715 Durio zibethinus HOM05D004642 ORTHO05D005466 9.3e-43 179.5 754 41.5
vmacro16950 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 1.2e-42 179.1 728 49.3
Aa31LG8G3170 Aethionema arabicum HOM05D004642 ORTHO05D005466 2.1e-42 178.3 520 30.8
Gorai.006G098800 Gossypium raimondii HOM05D004642 ORTHO05D005466 2.1e-42 178.3 564 28.9
Manes.11G047800 Manihot esculenta HOM05D004642 ORTHO05D005466 2.7e-42 177.9 710 52.1
CANSAT56G1090 Cannabis sativa HOM05D004642 ORTHO05D005466 3.5e-42 177.6 495 57.2
FAN09G1651 Fragaria x ananassa HOM05D004642 ORTHO05D005466 1.3e-41 175.6 721 55.1
Hma1.2p1_0323F.1_g125210 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 1.7e-41 175.3 429 36.4
PSO782G0786 Papaver somniferum HOM05D004642 ORTHO05D005466 2.3e-41 174.9 442 31.7
CiPaw.02G151400 Carya illinoinensis HOM05D004642 ORTHO05D005466 3.3e-40 171.0 716 42.9
SalBow2G0306 Salvia bowleyana HOM05D004642 ORTHO05D005466 1.6e-39 168.7 515 31.8
Nn8g39228 Nelumbo nucifera HOM05D004642 ORTHO05D005466 2.1e-39 168.3 727 48.1
Nn2g11790 Nelumbo nucifera HOM05D004642 ORTHO05D005466 4.8e-39 167.2 452 42.3
TWI75G1656 Tripterygium wilfordii HOM05D004642 ORTHO05D005466 3.1e-38 164.5 525 39.8
PGR102G3321 Punica granatum HOM05D004642 ORTHO05D005466 9.0e-38 162.9 515 34.4
CARHR091130 Cardamine hirsuta HOM05D004642 ORTHO05D005466 1.2e-37 162.5 524 31.3
COL.COLO4_30362 Corchorus olitorius HOM05D004642 ORTHO05D005466 1.5e-37 162.2 577 41.8
ClCG09G002170 Citrullus lanatus HOM05D004642 ORTHO05D005466 2.6e-37 161.4 516 36.8
Sabra01G0147200 Salix brachista HOM05D004642 ORTHO05D005466 3.4e-37 161.0 826 39.6
Eucgr.F03012 Eucalyptus grandis HOM05D004642 ORTHO05D005466 4.5e-37 160.6 378 44.2
Lalb_Chr04g0262651 Lupinus albus HOM05D004642 ORTHO05D005466 7.6e-37 159.8 510 30.4
SalBow2G2616 Salvia bowleyana HOM05D004642 ORTHO05D005466 4.9e-36 157.1 501 41.1
CsaV3_7G033140 Cucumis sativus L. HOM05D004642 ORTHO05D005466 3.2e-35 154.5 532 36.1
PSO063G4770 Papaver somniferum HOM05D004642 ORTHO05D005466 5.4e-35 153.7 422 37.7
Dinv30514 Davidia involucrata HOM05D004642 ORTHO05D005466 7.9e-34 149.8 615 45.7
ECA248G0988 Erigeron canadensis HOM05D004642 ORTHO05D005466 7.9e-34 149.8 423 42.3
MELO3C024228.2 Cucumis melo HOM05D004642 ORTHO05D005466 1.3e-33 149.1 726 45.7
AT3G16000 Arabidopsis thaliana HOM05D004642 ORTHO05D005466 3.0e-33 147.9 533 43.3
Lalb_Chr01g0012651 Lupinus albus HOM05D004642 ORTHO05D005466 3.9e-33 147.5 444 32.9
Glyma.12G087100 Glycine max HOM05D004642 ORTHO05D005466 5.1e-33 147.1 467 31.3
Phvul.011G092000 Phaseolus vulgaris HOM05D004642 ORTHO05D005466 1.9e-32 145.2 521 41.3
Hma1.2p1_0323F.1_g125200 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 1.3e-31 142.5 146 53.4
Sed0016916 Sechium edule HOM05D004642 ORTHO05D005466 6.2e-31 140.2 736 41.0
Ciclev10025273m.g Citrus clementina HOM05D004642 ORTHO05D005466 8.1e-31 139.8 395 53.9
Thhalv10020153m.g Eutrema salsugineum HOM05D004642 ORTHO05D005466 8.1e-31 139.8 459 27.9
MSTRG.9454 Avicennia marina HOM05D004642 ORTHO05D005466 1.1e-30 139.4 518 50.2
FAN02G1410 Fragaria x ananassa HOM05D004642 ORTHO05D005466 5.3e-30 137.1 189 46.0
AL3G28650 Arabidopsis lyrata HOM05D004642 ORTHO05D005466 1.2e-29 136.0 527 42.3
Haze_16437 Corylus avellana HOM05D004642 ORTHO05D005466 1.5e-29 135.6 623 32.3
Glyma.11G187500 Glycine max HOM05D004642 ORTHO05D005466 7.6e-29 133.3 678 39.4
Lalb_Chr14g0373421 Lupinus albus HOM05D004642 ORTHO05D005466 9.9e-29 132.9 669 30.9
CSS0030593 Camellia sinensis var. sinensis HOM05D004642 ORTHO05D005466 2.2e-28 131.7 566 41.2
Ca_19383_v3 Cicer arietinum L. HOM05D004642 ORTHO05D005466 2.9e-28 131.3 690 44.5
Sp3g14350 Schrenkiella parvula HOM05D004642 ORTHO05D005466 2.9e-28 131.3 524 41.4
Carub.0003s1573 Capsella rubella HOM05D004642 ORTHO05D005466 8.4e-28 129.8 529 43.1
Lj3g0008789 Lotus japonicus HOM05D004642 ORTHO05D005466 8.4e-28 129.8 531 36.9
THA.LOC104817998 Tarenaya hassleriana HOM05D004642 ORTHO05D005466 8.4e-28 129.8 515 40.6
Psat7g189080 Pisum sativum HOM05D004642 ORTHO05D005466 1.4e-27 129.0 682 46.8
Aqoxy7G01787 Aquilegia oxysepala HOM05D004642 ORTHO05D005466 2.4e-27 128.3 521 30.9
FAN05G5776 Fragaria x ananassa HOM05D004642 ORTHO05D005466 2.4e-27 128.3 721 52.4
Hund00614 Selenicereus undatus HOM05D004642 ORTHO05D005466 2.4e-27 128.3 641 44.5
BcaB04g18872 Brassica carinata HOM05D004642 ORTHO05D005466 4.2e-27 127.5 521 37.2
Medtr4g054960 Medicago truncatula HOM05D004642 ORTHO05D005466 4.2e-27 127.5 388 38.4
TAR626G0806 Trochodendron aralioides HOM05D004642 ORTHO05D005466 1.2e-26 125.9 425 31.8
Lj5A61G44 Lonicera japonica HOM05D004642 ORTHO05D005466 1.3e-25 122.5 390 32.3
Atru.chr1.3266 Acer truncatum HOM05D004642 ORTHO05D005466 6.7e-25 120.2 721 42.3
HanXRQChr09g0275271 Helianthus annuus HOM05D004642 ORTHO05D005466 8.7e-25 119.8 174 42.5
HanXRQChr16g0500971 Helianthus annuus HOM05D004642 ORTHO05D005466 3.3e-24 117.9 411 41.6
arahy.Tifrunner.gnm1.ann1.CA04QB Arachis hypogaea HOM05D004642 ORTHO05D005466 2.1e-23 115.2 480 40.4
arahy.Tifrunner.gnm1.ann1.Z6VQ0W Arachis hypogaea HOM05D004642 ORTHO05D005466 2.1e-23 115.2 480 40.4
TAR636G0382 Trochodendron aralioides HOM05D004642 ORTHO05D005466 2.1e-23 115.2 202 42.1
Ah.01g021290 Amaranthus hybridus HOM05D004642 ORTHO05D005466 3.7e-23 114.4 185 41.6
Sc21g0005100 Simmondsia chinensis HOM05D004642 ORTHO05D005466 1.1e-22 112.8 443 45.8
VMungo1127G1134 Vigna mungo HOM05D004642 ORTHO05D005466 1.1e-22 112.8 532 32.7
Dinv38051 Davidia involucrata HOM05D004642 ORTHO05D005466 3.1e-22 111.3 290 30.3
Hund06610 Selenicereus undatus HOM05D004642 ORTHO05D005466 3.1e-22 111.3 528 39.6
Migut.D01034 Erythranthe guttata HOM05D004642 ORTHO05D005466 6.9e-22 110.2 530 40.8
SGA_v2.0_scaffold37G14818 Striga asiatica HOM05D004642 ORTHO05D005466 6.9e-22 110.2 480 47.7
unitig_744.g24335 Utricularia gibba HOM05D004642 ORTHO05D005466 1.2e-21 109.4 363 30.6
arahy.Tifrunner.gnm1.ann1.I53961 Arachis hypogaea HOM05D004642 ORTHO05D005466 7.6e-21 106.7 405 37.0
Sed0016127 Sechium edule HOM05D004642 ORTHO05D005466 7.6e-21 106.7 414 25.1
BraA05t22169Z Brassica rapa HOM05D004642 ORTHO05D005466 2.9e-20 104.8 153 39.9
arahy.Tifrunner.gnm1.ann1.D5EQ93 Arachis hypogaea HOM05D004642 ORTHO05D005466 6.5e-20 103.6 424 36.8
AUR62011627 Chenopodium quinoa HOM05D004642 ORTHO05D005466 8.4e-20 103.2 463 29.8
A05p33450 Brassica napus HOM05D004642 ORTHO05D005466 2.5e-19 101.7 475 31.6
TPR.G15588 Trifolium pratense HOM05D004642 ORTHO05D005466 4.2e-19 100.9 609 49.8
BraA03t13110Z Brassica rapa HOM05D004642 ORTHO05D005466 5.5e-19 100.5 519 27.7
AUR62016441 Chenopodium quinoa HOM05D004642 ORTHO05D005466 1.6e-18 99.0 469 26.9
unitig_578.g16688 Utricularia gibba HOM05D004642 ORTHO05D005466 2.7e-18 98.2 749 26.2
C05p50450 Brassica napus HOM05D004642 ORTHO05D005466 7.9e-18 96.7 145 40.0
MD09G1213500 Malus domestica HOM05D004642 ORTHO05D005466 5.1e-17 94.0 329 34.0
A03p39630 Brassica napus HOM05D004642 ORTHO05D005466 3.3e-16 91.3 456 27.4
BcaC09g48580 Brassica carinata HOM05D004642 ORTHO05D005466 5.7e-16 90.5 490 22.7
BcaB06g25698 Brassica carinata HOM05D004642 ORTHO05D005466 7.4e-16 90.1 460 30.2
EL10Ac9g21996 Beta vulgaris HOM05D004642 ORTHO05D005466 9.6e-16 89.7 154 37.7
ATR0037G055 Amborella trichopoda HOM05D004642 ORTHO05D005466 1.3e-15 89.4 205 36.1
BcaC01g03843 Brassica carinata HOM05D004642 ORTHO05D005466 8.2e-15 86.7 364 31.0
C03p48030 Brassica napus HOM05D004642 ORTHO05D005466 8.2e-15 86.7 364 31.0
BolC3t17082H Brassica oleracea HOM05D004642 ORTHO05D005466 8.2e-15 86.7 364 31.0
CDE06G0246 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 4.1e-14 84.3 409 21.0
MD09G1212900 Malus domestica HOM05D004642 ORTHO05D005466 9.0e-14 83.2 82 56.1
HPP92_020045 Vanilla planifolia HOM05D004642 ORTHO05D005466 9.0e-14 83.2 419 22.4
BolC5t33791H Brassica oleracea HOM05D004642 ORTHO05D005466 1.5e-13 82.4 462 34.2
Os05g0180400 Oryza sativa ssp. japonica HOM05D004642 ORTHO05D005466 2.6e-13 81.6 394 34.3
Zm00001eb283760 Zea mays HOM05D004642 ORTHO05D005466 3.4e-13 81.3 485 25.2
BcaB04g20887 Brassica carinata HOM05D004642 ORTHO05D005466 4.5e-13 80.9 401 23.9
CDE07G1358 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 1.0e-12 79.7 409 20.0
Os01g0180300 Oryza sativa ssp. japonica HOM05D004642 ORTHO05D005466 2.2e-12 78.6 488 37.9
Glyma.11G237600 Glycine max HOM05D004642 ORTHO05D005466 1.5e-08 65.9 71 46.5
BolC1t04795H Brassica oleracea HOM05D004642 ORTHO05D005466 4.1e-06 57.8 160 30.6


User provided reference genes

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