Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G438.52 Capsicum annuum HOM05D004831 ORTHO05D003975 0.0e+00 1333.2 687 100.0
Sopen03g039230 Solanum pennellii HOM05D004831 ORTHO05D003975 2.7e-310 1068.1 713 79.1
PGSC0003DMG400002560 Solanum tuberosum HOM05D004831 ORTHO05D003975 6.7e-309 1063.5 747 76.2
Solyc03g120340.3 Solanum lycopersicum HOM05D004831 ORTHO05D003975 1.1e-308 1062.8 713 79.1
Peaxi162Scf00015g00247 Petunia axillaris HOM05D004831 ORTHO05D003975 1.4e-258 896.3 744 67.2
Nitab4.5_0003159g0050 Nicotiana tabacum HOM05D004831 ORTHO05D003975 1.1e-239 833.6 788 61.5
Nitab4.5_0003885g0040 Nicotiana tabacum HOM05D004831 ORTHO05D003975 4.3e-239 831.6 777 62.5
Dinv30528 Davidia involucrata HOM05D004831 ORTHO05D003975 1.2e-119 434.9 755 39.9
Actinidia01793 Actinidia chinensis HOM05D004831 ORTHO05D003975 1.9e-109 401.0 837 35.6
Cc04_g03580 Coffea canephora HOM05D004831 ORTHO05D003975 6.2e-105 386.0 702 41.0
Rhsim08G0218700 Rhododendron simsii HOM05D004831 ORTHO05D003975 5.3e-104 382.9 743 39.3
Oeu021950.1 Olea europaea HOM05D004831 ORTHO05D003975 9.0e-104 382.1 791 36.5
Oeu024063.2 Olea europaea HOM05D004831 ORTHO05D003975 2.6e-103 380.6 665 40.3
MSTRG.22702 Avicennia marina HOM05D004831 ORTHO05D003975 7.1e-101 372.5 720 37.9
Actinidia15826 Actinidia chinensis HOM05D004831 ORTHO05D003975 3.9e-99 366.7 379 53.0
TAR374G0326 Trochodendron aralioides HOM05D004831 ORTHO05D003975 6.7e-99 365.9 713 37.3
TAR626G1756 Trochodendron aralioides HOM05D004831 ORTHO05D003975 6.7e-99 365.9 713 37.3
Dinv38059 Davidia involucrata HOM05D004831 ORTHO05D003975 1.3e-94 351.7 751 37.3
CSS0014524 Camellia sinensis var. sinensis HOM05D004831 ORTHO05D003975 1.7e-94 351.3 829 34.6
QL05p025363 Quercus lobata HOM05D004831 ORTHO05D003975 3.8e-94 350.1 757 36.3
GSVIVG01017152001 Vitis vinifera HOM05D004831 ORTHO05D003975 3.8e-94 350.1 900 33.0
TAR383G0472 Trochodendron aralioides HOM05D004831 ORTHO05D003975 3.2e-93 347.1 719 36.0
Lj5A62T33 Lonicera japonica HOM05D004831 ORTHO05D003975 6.0e-92 342.8 780 36.3
SGA_v2.0_scaffold37G14809 Striga asiatica HOM05D004831 ORTHO05D003975 3.9e-91 340.1 755 35.2
vmacro18933 Vaccinium macrocarpon HOM05D004831 ORTHO05D003975 3.3e-90 337.0 700 36.4
Nn8g39278 Nelumbo nucifera HOM05D004831 ORTHO05D003975 5.9e-87 326.2 718 35.1
Prupe.3G073700 Prunus persica HOM05D004831 ORTHO05D003975 5.9e-87 326.2 751 35.3
TWI18G0228 Tripterygium wilfordii HOM05D004831 ORTHO05D003975 7.6e-87 325.9 715 37.8
ClCG09G002300 Citrullus lanatus HOM05D004831 ORTHO05D003975 1.0e-86 325.5 739 35.3
Migut.I00846 Erythranthe guttata HOM05D004831 ORTHO05D003975 2.2e-86 324.3 392 48.7
MELO3C023366.2 Cucumis melo HOM05D004831 ORTHO05D003975 4.2e-85 320.1 754 34.1
Hma1.2p1_0682F.1_g202670 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 7.9e-84 315.8 624 39.3
Hma1.2p1_2171F.1_g315970 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 2.3e-83 314.3 740 34.2
TWI12G0693 Tripterygium wilfordii HOM05D004831 ORTHO05D003975 3.0e-83 313.9 710 34.6
CsaV3_7G033010 Cucumis sativus L. HOM05D004831 ORTHO05D003975 4.3e-82 310.1 740 33.8
Thecc.06G083000 Theobroma cacao HOM05D004831 ORTHO05D003975 2.2e-81 307.8 745 35.7
Gohir.D10G072500 Gossypium hirsutum HOM05D004831 ORTHO05D003975 1.4e-80 305.1 735 34.8
Sed0027172 Sechium edule HOM05D004831 ORTHO05D003975 1.8e-80 304.7 707 33.5
Atru.chr1.3226 Acer truncatum HOM05D004831 ORTHO05D003975 2.4e-80 304.3 838 32.1
Gorai.011G078100 Gossypium raimondii HOM05D004831 ORTHO05D003975 5.3e-80 303.1 742 35.2
Potri.003G056600 Populus trichocarpa HOM05D004831 ORTHO05D003975 2.0e-79 301.2 762 34.5
CiPaw.02G152200 Carya illinoinensis HOM05D004831 ORTHO05D003975 3.4e-79 300.4 377 46.4
Lj3g0022365 Lotus japonicus HOM05D004831 ORTHO05D003975 7.7e-79 299.3 732 34.2
Cfa002050 Carpinus fangiana HOM05D004831 ORTHO05D003975 1.1e-77 295.4 928 30.7
Ciclev10024870m.g Citrus clementina HOM05D004831 ORTHO05D003975 1.1e-77 295.4 875 32.2
Gohir.A10G079000 Gossypium hirsutum HOM05D004831 ORTHO05D003975 2.5e-77 294.3 742 34.9
Hma1.2p1_0323F.1_g125270 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 6.1e-76 289.7 697 33.7
MBI01_g10032_MAGBIO Magnolia biondii HOM05D004831 ORTHO05D003975 7.9e-76 289.3 698 35.0
Manes.11G052100 Manihot esculenta HOM05D004831 ORTHO05D003975 7.4e-74 282.7 767 33.8
Sabra03G0032100 Salix brachista HOM05D004831 ORTHO05D003975 1.3e-73 282.0 773 32.9
Eucgr.F03008 Eucalyptus grandis HOM05D004831 ORTHO05D003975 6.3e-73 279.6 729 34.6
Lalb_Chr24g0395761 Lupinus albus HOM05D004831 ORTHO05D003975 1.4e-72 278.5 714 32.5
Potri.001G178200 Populus trichocarpa HOM05D004831 ORTHO05D003975 1.4e-72 278.5 725 32.6
Lsat_1_v5_gn_1_34820 Lactuca sativa HOM05D004831 ORTHO05D003975 3.1e-72 277.3 707 33.5
CANSAT56G2043 Cannabis sativa HOM05D004831 ORTHO05D003975 1.2e-71 275.4 760 32.1
Cpa.g.sc10.161 Carica papaya HOM05D004831 ORTHO05D003975 1.5e-71 275.0 827 31.4
Duzib235G0180 Durio zibethinus HOM05D004831 ORTHO05D003975 1.0e-70 272.3 694 34.7
HanXRQChr05g0163461 Helianthus annuus HOM05D004831 ORTHO05D003975 8.5e-70 269.2 696 32.3
RcHm_v2.0_Chr2g0137511 Rosa chinensis HOM05D004831 ORTHO05D003975 8.5e-70 269.2 737 33.6
Ca_24215_v3 Cicer arietinum L. HOM05D004831 ORTHO05D003975 1.4e-67 261.9 722 33.1
Glyma.15G013200 Glycine max HOM05D004831 ORTHO05D003975 5.2e-67 260.0 806 30.5
HanXRQChr02g0032681 Helianthus annuus HOM05D004831 ORTHO05D003975 6.7e-67 259.6 701 32.5
unitig_62.g23772 Utricularia gibba HOM05D004831 ORTHO05D003975 2.8e-65 254.2 740 32.7
Medtr8g467560 Medicago truncatula HOM05D004831 ORTHO05D003975 8.2e-65 252.7 732 32.2
arahy.Tifrunner.gnm1.ann1.5CE7DY Arachis hypogaea HOM05D004831 ORTHO05D003975 1.8e-64 251.5 721 31.9
Glyma.13G360700 Glycine max HOM05D004831 ORTHO05D003975 2.4e-64 251.1 825 30.4
Gohir.A09G084100 Gossypium hirsutum HOM05D004831 ORTHO05D003975 2.6e-63 247.7 656 36.1
Gohir.D09G083900 Gossypium hirsutum HOM05D004831 ORTHO05D003975 3.5e-63 247.3 659 36.3
Gorai.006G099900 Gossypium raimondii HOM05D004831 ORTHO05D003975 6.5e-62 243.0 658 35.7
Aa31sc115G30 Aethionema arabicum HOM05D004831 ORTHO05D003975 2.5e-61 241.1 762 29.9
EL10Ac9g21986 Beta vulgaris HOM05D004831 ORTHO05D003975 8.8e-59 232.6 746 30.2
FAN14G0810 Fragaria x ananassa HOM05D004831 ORTHO05D003975 1.1e-58 232.3 766 31.1
Hund06602 Selenicereus undatus HOM05D004831 ORTHO05D003975 5.7e-58 229.9 760 31.4
Sc15g0001240 Simmondsia chinensis HOM05D004831 ORTHO05D003975 5.7e-58 229.9 835 26.7
Duzib160G0042 Durio zibethinus HOM05D004831 ORTHO05D003975 9.7e-58 229.2 656 32.3
Aa31LG7G15290 Aethionema arabicum HOM05D004831 ORTHO05D003975 2.2e-57 228.0 750 30.7
DCAR_026304 Daucus carota HOM05D004831 ORTHO05D003975 2.8e-57 227.6 633 31.1
FAN09G2060 Fragaria x ananassa HOM05D004831 ORTHO05D003975 1.1e-56 225.7 769 30.0
FvH4_6g30920 Fragaria vesca HOM05D004831 ORTHO05D003975 1.4e-56 225.3 717 31.7
Lalb_Chr15g0078831 Lupinus albus HOM05D004831 ORTHO05D003975 5.3e-56 223.4 702 31.2
arahy.Tifrunner.gnm1.ann1.3B4S3M Arachis hypogaea HOM05D004831 ORTHO05D003975 7.0e-56 223.0 684 30.4
AUR62011616 Chenopodium quinoa HOM05D004831 ORTHO05D003975 9.1e-56 222.6 725 29.2
AUR62016432 Chenopodium quinoa HOM05D004831 ORTHO05D003975 9.1e-56 222.6 702 30.8
MD17G1197700 Malus domestica HOM05D004831 ORTHO05D003975 2.7e-55 221.1 683 31.0
arahy.Tifrunner.gnm1.ann1.Y8U4CK Arachis hypogaea HOM05D004831 ORTHO05D003975 5.9e-55 219.9 697 29.7
TPR.G31352 Trifolium pratense HOM05D004831 ORTHO05D003975 7.7e-55 219.5 845 28.6
Medtr6g068960 Medicago truncatula HOM05D004831 ORTHO05D003975 7.2e-53 213.0 644 33.1
PGR102G0340 Punica granatum HOM05D004831 ORTHO05D003975 7.2e-53 213.0 940 26.9
Phvul.002G299500 Phaseolus vulgaris HOM05D004831 ORTHO05D003975 9.4e-53 212.6 707 29.0
COL.COLO4_30332 Corchorus olitorius HOM05D004831 ORTHO05D003975 1.0e-51 209.1 353 39.7
arahy.Tifrunner.gnm1.ann1.NQW8T9 Arachis hypogaea HOM05D004831 ORTHO05D003975 1.6e-47 195.3 930 26.3
Sed0009949 Sechium edule HOM05D004831 ORTHO05D003975 1.3e-46 192.2 543 33.5
CDE04G1285 Ceratophyllum demersum HOM05D004831 ORTHO05D003975 2.2e-46 191.4 808 26.6
ATR0037G028 Amborella trichopoda HOM05D004831 ORTHO05D003975 2.9e-46 191.0 717 27.6
Lsat_1_v5_gn_9_45780 Lactuca sativa HOM05D004831 ORTHO05D003975 3.8e-46 190.7 624 30.8
Phvul.005G172500 Phaseolus vulgaris HOM05D004831 ORTHO05D003975 5.0e-46 190.3 933 25.3
CARHR016160 Cardamine hirsuta HOM05D004831 ORTHO05D003975 4.2e-45 187.2 737 28.6
ECA247G1173 Erigeron canadensis HOM05D004831 ORTHO05D003975 3.6e-44 184.1 729 27.8
THA.LOC104812471 Tarenaya hassleriana HOM05D004831 ORTHO05D003975 3.6e-44 184.1 779 29.8
Ah.01g021180 Amaranthus hybridus HOM05D004831 ORTHO05D003975 1.4e-43 182.2 729 28.1
Sp1g13970 Schrenkiella parvula HOM05D004831 ORTHO05D003975 9.8e-42 176.0 736 26.6
PSO782G5420 Papaver somniferum HOM05D004831 ORTHO05D003975 1.7e-41 175.3 754 27.5
FAN02G3038 Fragaria x ananassa HOM05D004831 ORTHO05D003975 1.8e-40 171.8 627 31.1
Carub.0001s1544 Capsella rubella HOM05D004831 ORTHO05D003975 3.1e-40 171.0 770 26.2
BcaC05g25641 Brassica carinata HOM05D004831 ORTHO05D003975 7.0e-40 169.9 747 26.5
Aqoxy7G01849 Aquilegia oxysepala HOM05D004831 ORTHO05D003975 1.6e-39 168.7 703 27.9
DCAR_009558 Daucus carota HOM05D004831 ORTHO05D003975 2.0e-39 168.3 479 31.9
A06p11680 Brassica napus HOM05D004831 ORTHO05D003975 3.5e-39 167.5 752 27.9
Thhalv10006918m.g Eutrema salsugineum HOM05D004831 ORTHO05D003975 3.5e-39 167.5 747 27.0
AT1G15660 Arabidopsis thaliana HOM05D004831 ORTHO05D003975 4.5e-39 167.2 754 26.5
Manes.04G121450 Manihot esculenta HOM05D004831 ORTHO05D003975 1.7e-38 165.2 503 30.4
Psat4g139520 Pisum sativum HOM05D004831 ORTHO05D003975 1.9e-37 161.8 408 31.6
BolC5t30118H Brassica oleracea HOM05D004831 ORTHO05D003975 3.3e-37 161.0 755 26.2
BraA06t24347Z Brassica rapa HOM05D004831 ORTHO05D003975 1.2e-36 159.1 756 26.3
AL1G27760 Arabidopsis lyrata HOM05D004831 ORTHO05D003975 4.7e-36 157.1 763 26.6
PSO063G2677 Papaver somniferum HOM05D004831 ORTHO05D003975 6.1e-36 156.8 765 26.7
Haze_16453 Corylus avellana HOM05D004831 ORTHO05D003975 5.7e-34 150.2 570 28.4
C05p13810 Brassica napus HOM05D004831 ORTHO05D012057 1.0e-30 139.4 705 25.8
BcaC05g25510 Brassica carinata HOM05D004831 ORTHO05D003975 7.3e-29 133.3 764 27.0
ClCG05G013830 Citrullus lanatus HOM05D004831 ORTHO05D003975 6.2e-28 130.2 355 32.1
Aa31LG7G300 Aethionema arabicum HOM05D004831 ORTHO05D003975 3.4e-26 124.4 615 27.0
HPP92_017895 Vanilla planifolia HOM05D004831 ORTHO05D003975 6.0e-23 113.6 784 24.4
Migut.I00847 Erythranthe guttata HOM05D004831 ORTHO05D003975 1.0e-22 112.8 105 57.1
TAR624G1194 Trochodendron aralioides HOM05D004831 ORTHO05D003975 3.9e-22 110.9 114 47.4
Actinidia15827 Actinidia chinensis HOM05D004831 ORTHO05D003975 5.0e-22 110.5 167 43.1
Duzib192G1036 Durio zibethinus HOM05D004831 ORTHO05D003975 5.0e-22 110.5 371 32.6
Zm00001eb159780 Zea mays HOM05D018572 ORTHO05D003975 3.4e-18 97.8 652 24.7
COL.COLO4_30333 Corchorus olitorius HOM05D004831 ORTHO05D003975 2.2e-17 95.1 128 44.5
Haze_24989 Corylus avellana HOM05D004831 ORTHO05D003975 2.9e-17 94.7 128 44.5
Zm00001eb358290 Zea mays HOM05D018572 ORTHO05D003975 2.4e-16 91.7 642 25.7
Os01g0617700 Oryza sativa ssp. japonica HOM05D004831 ORTHO05D003975 9.2e-16 89.7 761 22.1
Aa31LG7G290 Aethionema arabicum HOM05D004831 ORTHO05D003975 7.8e-15 86.7 178 32.6
Haze_16456 Corylus avellana HOM05D004831 ORTHO05D003975 8.6e-14 83.2 118 44.9
MD09G1215000 Malus domestica HOM05D004831 ORTHO05D003975 5.6e-13 80.5 145 33.8
SHI09311 Sapria himalayana HOM05D004831 ORTHO05D003975 9.5e-13 79.7 124 40.3
TPR.G24077 Trifolium pratense HOM05D004831 ORTHO05D003975 1.6e-12 79.0 181 36.5
AagrBONN_evm.TU.Sc2ySwM_368.483__484 Anthoceros agrestis HOM05D004831 ORTHO05D003975 5.2e-11 73.9 121 43.0
SMO203G0255 Selaginella moellendorffii HOM05D004831 ORTHO05D003975 6.8e-11 73.6 85 44.7
CAN.G675.22 Capsicum annuum HOM05D004831 ORTHO05D003975 1.2e-10 72.8 49 73.5
Mapoly0008s0161 Marchantia polymorpha HOM05D004831 ORTHO05D003975 7.6e-10 70.1 143 35.0
SHI09312 Sapria himalayana HOM05D004831 ORTHO05D003975 9.2e-08 63.2 144 31.9
Pp3c5_11060 Physcomitrium patens HOM05D004831 ORTHO05D003975 1.6e-07 62.4 111 33.3
Pp3c2_32580 Physcomitrium patens HOM05D004831 ORTHO05D003975 1.3e-06 59.3 271 25.1
CAN.G408.4 Capsicum annuum HOM05D001456 ORTHO05D003975 2.3e-06 58.5 44 70.5
BcaB03g14531 Brassica carinata HOM05D004831 ORTHO05D017393 3.0e-06 58.2 175 29.1
SEGI_34595 Sequoiadendron giganteum HOM05D004831 ORTHO05D003975 3.9e-06 57.8 41 61.0


User provided reference genes

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