Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G438.47 Capsicum annuum HOM05D004328 ORTHO05D005210 2.0e-163 578.9 272 100.0
Nitab4.5_0002424g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 6.6e-151 537.3 278 91.4
Nitab4.5_0000862g0040 Nicotiana tabacum HOM05D004328 ORTHO05D005210 1.1e-150 536.6 280 90.4
Peaxi162Scf00015g00027 Petunia axillaris HOM05D004328 ORTHO05D005210 1.3e-141 506.5 263 89.4
PGSC0003DMG400002634 Solanum tuberosum HOM05D004328 ORTHO05D005210 1.3e-138 496.5 270 87.4
Sopen03g039300 Solanum pennellii HOM05D004328 ORTHO05D005210 4.2e-137 491.5 265 87.9
Nitab4.5_0003848g0010 Nicotiana tabacum HOM05D004328 ORTHO05D005210 6.9e-132 474.2 266 82.0
Nitab4.5_0008539g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 1.5e-131 473.0 265 82.3
CAN.G395.24 Capsicum annuum HOM05D004328 ORTHO05D005210 2.0e-131 472.6 240 90.4
PGSC0003DMG400016515 Solanum tuberosum HOM05D004328 ORTHO05D005210 3.4e-131 471.9 235 91.1
Cc01_g03290 Coffea canephora HOM05D004328 ORTHO05D005210 1.1e-129 466.8 279 78.5
Sopen06g025090 Solanum pennellii HOM05D004328 ORTHO05D005210 3.2e-129 465.3 235 88.9
Solyc06g066800.2 Solanum lycopersicum HOM05D004328 ORTHO05D005210 4.6e-128 461.5 235 88.5
Lj5C63T9 Lonicera japonica HOM05D004328 ORTHO05D005210 1.8e-127 459.5 281 76.9
PGR102G1437 Punica granatum HOM05D004328 ORTHO05D005210 6.7e-127 457.6 244 86.1
Rhsim12G0195900 Rhododendron simsii HOM05D004328 ORTHO05D005210 8.7e-127 457.2 283 75.3
Peaxi162Scf00207g00087 Petunia axillaris HOM05D004328 ORTHO05D005210 1.1e-126 456.8 240 86.2
MSTRG.4726 Avicennia marina HOM05D004328 ORTHO05D005210 1.6e-125 453.0 266 78.6
Prupe.7G118400 Prunus persica HOM05D004328 ORTHO05D005210 3.7e-125 451.8 243 81.9
CSS0022667 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 8.1e-125 450.7 281 77.2
SalBow2G3162 Salvia bowleyana HOM05D004328 ORTHO05D005210 8.1e-125 450.7 263 77.6
Actinidia28583 Actinidia chinensis HOM05D004328 ORTHO05D005210 1.1e-124 450.3 279 74.9
Oeu014856.1 Olea europaea HOM05D004328 ORTHO05D005210 1.1e-124 450.3 268 77.2
Lj9P505T43 Lonicera japonica HOM05D004328 ORTHO05D005210 2.4e-124 449.1 275 75.3
SalBow2G0585 Salvia bowleyana HOM05D004328 ORTHO05D005210 2.4e-124 449.1 264 78.4
SalBow2G3647 Salvia bowleyana HOM05D004328 ORTHO05D005210 2.4e-124 449.1 264 78.4
SGA_v2.0_scaffold117G32383 Striga asiatica HOM05D004328 ORTHO05D005210 6.9e-124 447.6 262 79.0
HanXRQChr09g0275421 Helianthus annuus HOM05D004328 ORTHO05D005210 9.0e-124 447.2 237 84.0
vmacro16940 Vaccinium macrocarpon HOM05D004328 ORTHO05D005210 9.0e-124 447.2 280 75.4
AUR62011605 Chenopodium quinoa HOM05D004328 ORTHO05D005210 2.6e-123 445.7 247 81.0
Hma1.2p1_0682F.1_g202590 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 4.5e-123 444.9 266 75.6
Sc10g0005470 Simmondsia chinensis HOM05D004328 ORTHO05D005210 7.6e-123 444.1 255 79.2
Lsat_1_v5_gn_4_104460 Lactuca sativa HOM05D004328 ORTHO05D005210 1.3e-122 443.4 255 78.8
EL10Ac9g21975 Beta vulgaris HOM05D004328 ORTHO05D005210 1.7e-122 443.0 256 77.3
Hma1.2p1_0317F.1_g123230 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 2.2e-122 442.6 265 74.7
Hund00585 Selenicereus undatus HOM05D004328 ORTHO05D005210 2.9e-122 442.2 255 78.4
Eucgr.F02577 Eucalyptus grandis HOM05D004328 ORTHO05D005210 6.5e-122 441.0 229 84.7
FvH4_6g17800 Fragaria vesca HOM05D004328 ORTHO05D005210 6.5e-122 441.0 245 78.8
MD14G1015000 Malus domestica HOM05D004328 ORTHO05D005210 6.5e-122 441.0 243 80.7
Potri.011G117500 Populus trichocarpa HOM05D004328 ORTHO05D005210 6.5e-122 441.0 244 79.9
Ah.01g021090 Amaranthus hybridus HOM05D004738 ORTHO05D006439 8.4e-122 440.7 245 81.2
FAN05G3798 Fragaria x ananassa HOM05D004328 ORTHO05D005210 8.4e-122 440.7 236 81.4
RcHm_v2.0_Chr3g0472051 Rosa chinensis HOM05D004328 ORTHO05D005210 1.1e-121 440.3 243 80.2
Potri.019G042500 Populus trichocarpa HOM05D004328 ORTHO05D005210 1.4e-121 439.9 240 80.8
Oeu022420.1 Olea europaea HOM05D004328 ORTHO05D005210 1.9e-121 439.5 235 83.8
FAN02G3409 Fragaria x ananassa HOM05D004328 ORTHO05D005210 2.5e-121 439.1 236 80.9
FAN05G2947 Fragaria x ananassa HOM05D004328 ORTHO05D005210 4.2e-121 438.3 236 80.9
MD12G1017300 Malus domestica HOM05D004328 ORTHO05D005210 5.5e-121 438.0 243 80.2
AT1G64980 Arabidopsis thaliana HOM05D004328 ORTHO05D005210 9.3e-121 437.2 246 76.8
AL2G19530 Arabidopsis lyrata HOM05D004328 ORTHO05D005210 1.2e-120 436.8 246 76.8
Carub.0002s1013 Capsella rubella HOM05D004328 ORTHO05D005210 2.7e-120 435.6 246 76.8
Lsat_1_v5_gn_5_129800 Lactuca sativa HOM05D004328 ORTHO05D005210 2.7e-120 435.6 239 80.3
Sp5g19300 Schrenkiella parvula HOM05D004328 ORTHO05D005210 2.7e-120 435.6 246 76.8
Sabra19G0052600 Salix brachista HOM05D004328 ORTHO05D005210 3.5e-120 435.3 240 80.0
ECA232G0498 Erigeron canadensis HOM05D004328 ORTHO05D005210 4.6e-120 434.9 242 81.4
MSTRG.11095 Avicennia marina HOM05D004328 ORTHO05D005210 6.0e-120 434.5 272 75.4
CARHR056380 Cardamine hirsuta HOM05D004328 ORTHO05D005210 7.9e-120 434.1 240 77.9
Manes.09G129900 Manihot esculenta HOM05D004328 ORTHO05D005210 7.9e-120 434.1 238 79.4
Haze_00368 Corylus avellana HOM05D004328 ORTHO05D005210 3.0e-119 432.2 244 79.5
Migut.I00840 Erythranthe guttata HOM05D004328 ORTHO05D005210 3.0e-119 432.2 244 78.7
THA.LOC104805717 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 3.9e-119 431.8 236 79.7
BolC6t38986H Brassica oleracea HOM05D004328 ORTHO05D005210 6.7e-119 431.0 240 78.8
CiPaw.06G036200 Carya illinoinensis HOM05D004328 ORTHO05D005210 6.7e-119 431.0 244 78.7
Aa31LG2G2180 Aethionema arabicum HOM05D004328 ORTHO05D005210 1.1e-118 430.3 240 78.3
BraA07t30899Z Brassica rapa HOM05D004328 ORTHO05D005210 1.1e-118 430.3 240 77.9
Prupe.2G050300 Prunus persica HOM05D004328 ORTHO05D005210 1.1e-118 430.3 237 79.7
BcaB05g24072 Brassica carinata HOM05D004328 ORTHO05D005210 1.5e-118 429.9 239 77.4
Sabra11G0102700 Salix brachista HOM05D004328 ORTHO05D005210 1.5e-118 429.9 250 76.4
COL.COLO4_15130 Corchorus olitorius HOM05D004328 ORTHO05D005210 2.5e-118 429.1 243 78.2
MELO3C003305.2 Cucumis melo HOM05D004328 ORTHO05D005210 3.3e-118 428.7 235 79.1
Phvul.011G017300 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 4.3e-118 428.3 233 79.8
unitig_744.g24340 Utricularia gibba HOM05D004328 ORTHO05D005210 4.3e-118 428.3 242 78.9
unitig_21.g20512 Utricularia gibba HOM05D004328 ORTHO05D005210 5.7e-118 427.9 237 79.7
C06p38940 Brassica napus HOM05D004328 ORTHO05D005210 7.4e-118 427.6 256 75.0
Manes.08G160500 Manihot esculenta HOM05D004328 ORTHO05D005210 7.4e-118 427.6 235 80.4
QL09p020622 Quercus lobata HOM05D004328 ORTHO05D005210 7.4e-118 427.6 244 78.3
BcaB03g15334 Brassica carinata HOM05D004328 ORTHO05D005210 9.6e-118 427.2 240 78.3
BraA02t06349Z Brassica rapa HOM05D004328 ORTHO05D005210 9.6e-118 427.2 242 77.3
Sed0022403 Sechium edule HOM05D004328 ORTHO05D005210 9.6e-118 427.2 233 80.7
A02p12950 Brassica napus HOM05D004328 ORTHO05D005210 1.3e-117 426.8 242 77.3
Ciclev10032525m.g Citrus clementina HOM05D004328 ORTHO05D005210 1.3e-117 426.8 237 79.3
Thhalv10019022m.g Eutrema salsugineum HOM05D004328 ORTHO05D005210 1.6e-117 426.4 245 75.9
A07p32730 Brassica napus HOM05D004328 ORTHO05D005210 2.1e-117 426.0 240 77.9
Lalb_Chr09g0320061 Lupinus albus HOM05D004328 ORTHO05D005210 2.1e-117 426.0 247 76.1
Atru.chr12.1869 Acer truncatum HOM05D004328 ORTHO05D005210 3.7e-117 425.2 243 78.6
TWI60G0134 Tripterygium wilfordii HOM05D004328 ORTHO05D005210 3.7e-117 425.2 234 78.6
DCAR_007553 Daucus carota HOM05D004328 ORTHO05D005210 4.8e-117 424.9 259 74.9
Duzib177G0674 Durio zibethinus HOM05D004328 ORTHO05D005210 4.8e-117 424.9 239 77.8
Sed0006415 Sechium edule HOM05D004328 ORTHO05D005210 4.8e-117 424.9 233 79.8
VMungo1215G1960 Vigna mungo HOM05D004328 ORTHO05D005210 6.3e-117 424.5 254 75.6
Thecc.05G223000 Theobroma cacao HOM05D004328 ORTHO05D005210 8.2e-117 424.1 235 79.1
HanXRQChr14g0455981 Helianthus annuus HOM05D004328 ORTHO05D005210 1.1e-116 423.7 233 80.3
TAR629G0545 Trochodendron aralioides HOM05D004328 ORTHO05D005210 1.4e-116 423.3 267 71.2
Glyma.12G014400 Glycine max HOM05D004328 ORTHO05D005210 1.8e-116 422.9 235 80.0
C02p21060 Brassica napus HOM05D004328 ORTHO05D005210 2.4e-116 422.5 244 76.2
Medtr6g046960 Medicago truncatula HOM05D004328 ORTHO05D005210 2.4e-116 422.5 253 74.3
arahy.Tifrunner.gnm1.ann1.BXRJ0F Arachis hypogaea HOM05D004328 ORTHO05D005210 3.1e-116 422.2 235 79.6
BcaC03g14669 Brassica carinata HOM05D004328 ORTHO05D005210 4.1e-116 421.8 244 76.2
BolC2t08247H Brassica oleracea HOM05D004328 ORTHO05D005210 4.1e-116 421.8 244 76.2
Duzib128G0566 Durio zibethinus HOM05D004328 ORTHO05D005210 4.1e-116 421.8 239 76.6
THA.LOC104823797 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 5.3e-116 421.4 250 74.0
Ca_24428_v3 Cicer arietinum L. HOM05D004328 ORTHO05D005210 6.9e-116 421.0 242 77.3
Gohir.D08G240500 Gossypium hirsutum HOM05D004328 ORTHO05D005210 6.9e-116 421.0 234 77.4
Gorai.004G255800 Gossypium raimondii HOM05D004328 ORTHO05D005210 6.9e-116 421.0 234 77.4
MBI04_g30767_MAGBIO Magnolia biondii HOM05D004328 ORTHO05D005210 6.9e-116 421.0 238 77.7
Medtr5g007050 Medicago truncatula HOM05D004328 ORTHO05D005210 6.9e-116 421.0 225 80.4
TPR.G37879 Trifolium pratense HOM05D004328 ORTHO05D005210 6.9e-116 421.0 257 72.8
Glyma.11G008400 Glycine max HOM05D004328 ORTHO05D005210 9.0e-116 420.6 260 73.1
Phvul.002G041900 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 1.2e-115 420.2 239 76.6
BcaB03g15336 Brassica carinata HOM05D004328 ORTHO05D005210 1.5e-115 419.9 240 77.5
Glyma.01G234500 Glycine max HOM05D004328 ORTHO05D005210 1.5e-115 419.9 263 73.0
Gohir.A08G221646 Gossypium hirsutum HOM05D004328 ORTHO05D005210 2.6e-115 419.1 234 76.5
PSO063G4889 Papaver somniferum HOM05D004328 ORTHO05D005210 5.9e-115 417.9 231 78.8
Nn8g40188 Nelumbo nucifera HOM05D004328 ORTHO05D005210 7.6e-115 417.5 239 77.4
LjContig00222g0018106 Lotus japonicus HOM05D004328 ORTHO05D005210 1.3e-114 416.8 242 75.6
CiPaw.05G212500 Carya illinoinensis HOM05D004328 ORTHO05D005210 1.7e-114 416.4 232 77.6
PSO782G5014 Papaver somniferum HOM05D004328 ORTHO05D005210 1.7e-114 416.4 236 77.5
Psat2g189640 Pisum sativum HOM05D004328 ORTHO05D005210 1.7e-114 416.4 235 75.7
Aqoxy7G02544 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 2.9e-114 415.6 250 73.2
Carub.0005s0946 Capsella rubella HOM05D004328 ORTHO05D005210 5.0e-114 414.8 242 74.8
VMungo1127G1200 Vigna mungo HOM05D004328 ORTHO05D005210 6.5e-114 414.5 224 79.9
Nn3g21153 Nelumbo nucifera HOM05D004328 ORTHO05D005210 8.4e-114 414.1 264 70.8
CDE02G2329 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 1.1e-113 413.7 229 79.0
Gohir.A02G114200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 1.1e-113 413.7 244 75.4
Gorai.003G058000 Gossypium raimondii HOM05D004328 ORTHO05D005210 1.1e-113 413.7 244 75.4
CANSAT21G1275 Cannabis sativa HOM05D004328 ORTHO05D005210 1.4e-113 413.3 231 78.4
AUR62016419 Chenopodium quinoa HOM05D004328 ORTHO05D005210 1.9e-113 412.9 251 74.1
Gohir.D03G055200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 3.2e-113 412.1 244 75.4
ECA234G3285 Erigeron canadensis HOM05D004328 ORTHO05D005210 3.5e-112 408.7 240 77.1
Aqoxy3G03943 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 7.9e-112 407.5 247 72.9
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 1.3e-111 406.8 245 74.7
ATR0829G052 Amborella trichopoda HOM05D004328 ORTHO05D005210 3.9e-111 405.2 229 75.1
PSO675G2272 Papaver somniferum HOM05D004328 ORTHO05D005210 8.7e-111 404.1 236 74.6
PSO135G0870 Papaver somniferum HOM05D004328 ORTHO05D005210 2.2e-109 399.4 248 71.4
SHI15002 Sapria himalayana HOM05D004328 ORTHO05D005210 4.8e-109 398.3 246 72.4
PSO384G3958 Papaver somniferum HOM05D004328 ORTHO05D005210 6.3e-109 397.9 248 71.8
PSO384G1513 Papaver somniferum HOM05D004328 ORTHO05D005210 8.2e-109 397.5 241 72.2
PSO502G0015 Papaver somniferum HOM05D004328 ORTHO05D005210 1.1e-108 397.1 236 73.7
SEGI_26076 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 1.5e-107 393.3 238 71.8
HPP92_014971 Vanilla planifolia HOM05D004328 ORTHO05D005210 4.5e-107 391.7 229 76.4
SEGI_10122 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 7.7e-107 391.0 245 68.6
unitig_578.g16690 Utricularia gibba HOM05D004328 ORTHO05D005210 8.5e-106 387.5 237 73.8
Zm00001eb192470 Zea mays HOM05D004328 ORTHO05D005210 1.3e-98 363.6 228 71.9
Cpa.g.sc43.145 Carica papaya HOM05D004328 ORTHO05D005210 1.7e-98 363.2 207 78.7
SMO118G0121 Selaginella moellendorffii HOM05D004328 ORTHO05D005210 5.0e-98 361.7 223 70.9
Os07g0413800 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 6.5e-98 361.3 240 66.7
Os10g0516400 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 1.9e-97 359.8 239 66.1
Zm00001eb062050 Zea mays HOM05D004328 ORTHO05D005210 1.9e-97 359.8 242 67.4
AagrBONN_evm.TU.Sc2ySwM_362.571 Anthoceros agrestis HOM05D004328 ORTHO05D005210 9.4e-97 357.5 259 61.8
CBR_g51102 Chara braunii HOM05D004328 ORTHO05D005210 3.3e-94 349.0 226 68.6
Solyc03g120410.3 Solanum lycopersicum HOM05D004328 ORTHO05D005210 6.5e-90 334.7 157 96.2
MD07G1085100 Malus domestica HOM05D004328 ORTHO05D005210 4.4e-86 322.0 229 64.2
GSVIVG01024323001 Vitis vinifera HOM05D004328 ORTHO05D005210 3.1e-84 315.8 178 82.0
Hma1.2p1_0323F.1_g125290 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 4.1e-84 315.5 265 57.7
Cc04_g03630 Coffea canephora HOM05D004328 ORTHO05D005210 2.0e-83 313.2 156 87.8
Pp3c20_18260 Physcomitrium patens HOM05D004328 ORTHO05D005210 2.6e-62 243.0 173 61.8
Haze_27513 Corylus avellana HOM05D004328 ORTHO05D005210 2.9e-53 213.0 218 47.2
CDE06G1981 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 2.0e-51 206.8 230 47.0
CSS0035944 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 2.3e-50 203.4 211 51.2
GSVIVG01017160001 Vitis vinifera HOM05D004328 ORTHO05D005210 7.3e-41 171.8 89 86.5
HanXRQChr16g0528931 Helianthus annuus HOM05D004328 ORTHO05D005210 5.6e-33 145.6 107 67.3
CANSAT56G0697 Cannabis sativa HOM05D004328 ORTHO05D005210 5.4e-28 129.0 116 56.0
Actinidia15822 Actinidia chinensis HOM05D004328 ORTHO05D005210 5.1e-26 122.5 152 47.4
Sc12g0009110 Simmondsia chinensis HOM05D004328 ORTHO05D387867 4.8e-16 89.4 51 64.7
Zm00001eb029120 Zea mays HOM05D004328 ORTHO05D442189 1.6e-11 74.3 64 59.4


User provided reference genes

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