Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G438.45 Capsicum annuum HOM05D004738 ORTHO05D006439 2.5e-264 914.8 452 100.0
PGSC0003DMG400002559 Solanum tuberosum HOM05D004738 ORTHO05D006439 7.2e-227 790.4 461 86.3
Sopen00g008920 Solanum pennellii HOM05D004738 ORTHO05D006439 2.2e-223 778.9 459 85.8
Sopen03g039310 Solanum pennellii HOM05D004738 ORTHO05D006439 2.2e-223 778.9 459 85.8
Solyc03g120430.3 Solanum lycopersicum HOM05D004738 ORTHO05D006439 9.1e-222 773.5 459 85.4
Nitab4.5_0005784g0040 Nicotiana tabacum HOM05D004738 ORTHO05D006439 1.5e-216 756.1 459 82.8
Nitab4.5_0002424g0040 Nicotiana tabacum HOM05D004738 ORTHO05D006439 2.1e-210 735.7 480 79.0
Peaxi162Scf00015g00234 Petunia axillaris HOM05D004738 ORTHO05D006439 2.7e-197 692.2 385 86.5
SGA_v2.0_scaffold37G14802 Striga asiatica HOM05D004738 ORTHO05D006439 5.8e-176 621.3 459 66.9
Cc04_g03640 Coffea canephora HOM05D004738 ORTHO05D006439 9.9e-176 620.5 469 67.4
Sabra03G0032700 Salix brachista HOM05D004738 ORTHO05D006439 7.1e-174 614.4 456 68.0
Potri.003G058500 Populus trichocarpa HOM05D004738 ORTHO05D006439 3.9e-172 608.6 457 66.5
MD17G1198400 Malus domestica HOM05D004738 ORTHO05D006439 6.6e-172 607.8 456 66.9
Migut.I00837 Erythranthe guttata HOM05D004738 ORTHO05D006439 1.1e-171 607.1 430 68.8
Oeu022417.1 Olea europaea HOM05D004738 ORTHO05D006439 4.3e-171 605.1 461 67.2
COL.COLO4_02957 Corchorus olitorius HOM05D004738 ORTHO05D006439 7.3e-171 604.4 360 78.3
Thecc.06G081700 Theobroma cacao HOM05D004738 ORTHO05D006439 9.6e-171 604.0 460 66.7
Dinv30535 Davidia involucrata HOM05D004738 ORTHO05D006439 8.1e-170 600.9 456 66.2
Rhsim12G0195800 Rhododendron simsii HOM05D004738 ORTHO05D006439 6.9e-169 597.8 471 65.0
CSS0005409 Camellia sinensis var. sinensis HOM05D004738 ORTHO05D006439 1.2e-168 597.0 459 66.9
Duzib235G1168 Durio zibethinus HOM05D004738 ORTHO05D006439 1.2e-168 597.0 465 65.4
Lj9A505T66 Lonicera japonica HOM05D004738 ORTHO05D006439 1.2e-168 597.0 360 78.3
vmacro16939 Vaccinium macrocarpon HOM05D004738 ORTHO05D006439 1.5e-168 596.7 462 65.4
Actinidia08828 Actinidia chinensis HOM05D004738 ORTHO05D006439 2.0e-168 596.3 451 66.3
MSTRG.11096 Avicennia marina HOM05D004738 ORTHO05D006439 2.0e-168 596.3 419 69.0
CiPaw.02G152800 Carya illinoinensis HOM05D004738 ORTHO05D006439 2.0e-168 596.3 453 66.7
FAN05G5687 Fragaria x ananassa HOM05D004738 ORTHO05D006439 2.6e-168 595.9 460 64.3
Prupe.3G075100 Prunus persica HOM05D004738 ORTHO05D006439 2.6e-168 595.9 458 65.5
Haze_16464 Corylus avellana HOM05D004738 ORTHO05D006439 7.6e-168 594.3 490 63.9
FvH4_6g30840 Fragaria vesca HOM05D004738 ORTHO05D006439 9.9e-168 594.0 376 72.9
CANSAT56G4214 Cannabis sativa HOM05D004738 ORTHO05D006439 1.3e-167 593.6 389 73.3
Gohir.A02G122900 Gossypium hirsutum HOM05D004738 ORTHO05D006439 4.9e-167 591.7 454 65.4
FAN02G1331 Fragaria x ananassa HOM05D004738 ORTHO05D006439 1.1e-166 590.5 453 64.5
RcHm_v2.0_Chr2g0137281 Rosa chinensis HOM05D004738 ORTHO05D006439 1.1e-166 590.5 396 69.9
Medtr2g102510 Medicago truncatula HOM05D004738 ORTHO05D006439 2.4e-166 589.3 417 68.8
Gorai.002G058000 Gossypium raimondii HOM05D004738 ORTHO05D006439 3.2e-166 589.0 454 65.0
Manes.04G120700 Manihot esculenta HOM05D004738 ORTHO05D006439 3.2e-166 589.0 435 68.3
Cfa002046 Carpinus fangiana HOM05D004738 ORTHO05D006439 4.2e-166 588.6 459 66.7
TAR383G0518 Trochodendron aralioides HOM05D004738 ORTHO05D006439 4.2e-166 588.6 372 72.8
Gohir.D03G073500 Gossypium hirsutum HOM05D004738 ORTHO05D006439 9.3e-166 587.4 454 65.0
VMungo1080G0347 Vigna mungo HOM05D004738 ORTHO05D006439 9.3e-166 587.4 450 67.1
Gohir.A05G127000 Gossypium hirsutum HOM05D004738 ORTHO05D006439 1.6e-165 586.6 377 74.3
QL05p025470 Quercus lobata HOM05D004738 ORTHO05D006439 1.6e-165 586.6 378 73.0
Sc12g0009100 Simmondsia chinensis HOM05D004738 ORTHO05D006439 2.1e-165 586.3 397 71.3
Gorai.009G132100 Gossypium raimondii HOM05D004738 ORTHO05D006439 2.7e-165 585.9 398 72.4
DCAR_026302 Daucus carota HOM05D004738 ORTHO05D006439 3.5e-165 585.5 428 66.8
FAN09G3531 Fragaria x ananassa HOM05D004738 ORTHO05D006439 3.5e-165 585.5 455 64.0
Nn2g11846 Nelumbo nucifera HOM05D004738 ORTHO05D006439 1.3e-164 583.6 423 69.7
TPR.G37250 Trifolium pratense HOM05D004738 ORTHO05D006439 1.3e-164 583.6 377 71.9
Potri.001G177300 Populus trichocarpa HOM05D004738 ORTHO05D006439 1.7e-164 583.2 391 73.1
FAN14G4632 Fragaria x ananassa HOM05D004738 ORTHO05D006439 3.9e-164 582.0 465 62.8
Phvul.005G173200 Phaseolus vulgaris HOM05D004738 ORTHO05D006439 3.9e-164 582.0 453 64.0
Ca_01103_v3 Cicer arietinum L. HOM05D004738 ORTHO05D006439 6.6e-164 581.3 403 69.5
Cpa.g.sc10.174 Carica papaya HOM05D004738 ORTHO05D006439 8.7e-164 580.9 360 74.4
Lj3g0008822 Lotus japonicus HOM05D004738 ORTHO05D006439 1.1e-163 580.5 425 67.3
GSVIVG01017163001 Vitis vinifera HOM05D004738 ORTHO05D006439 3.3e-163 578.9 383 72.8
arahy.Tifrunner.gnm1.ann1.2F1L5Z Arachis hypogaea HOM05D004738 ORTHO05D006439 7.3e-163 577.8 400 71.8
Ciclev10025569m.g Citrus clementina HOM05D004738 ORTHO05D006439 7.3e-163 577.8 458 64.2
Glyma.15G012500 Glycine max HOM05D004738 ORTHO05D006439 9.6e-163 577.4 348 77.0
Eucgr.F02574 Eucalyptus grandis HOM05D004738 ORTHO05D006439 1.3e-162 577.0 347 76.9
ECA247G3808 Erigeron canadensis HOM05D004738 ORTHO05D006439 1.6e-162 576.6 374 72.5
Nn8g39296 Nelumbo nucifera HOM05D004738 ORTHO05D006439 8.1e-162 574.3 406 70.2
HanXRQChr04g0096441 Helianthus annuus HOM05D004738 ORTHO05D006439 1.1e-161 573.9 380 71.1
Sp5g35430 Schrenkiella parvula HOM05D004738 ORTHO05D006439 1.4e-161 573.5 462 62.3
TWI12G0818 Tripterygium wilfordii HOM05D004738 ORTHO05D006439 2.4e-161 572.8 461 63.1
Hund06597 Selenicereus undatus HOM05D004738 ORTHO05D006439 3.1e-161 572.4 407 68.3
Lalb_Chr14g0373571 Lupinus albus HOM05D004738 ORTHO05D006439 4.0e-161 572.0 455 64.0
Lsat_1_v5_gn_1_34140 Lactuca sativa HOM05D004738 ORTHO05D006439 6.9e-161 571.2 419 66.3
Thhalv10018540m.g Eutrema salsugineum HOM05D004738 ORTHO05D006439 2.0e-160 569.7 459 62.3
HanXRQChr02g0032631 Helianthus annuus HOM05D004738 ORTHO05D006439 3.4e-160 568.9 423 65.7
CARHR074130 Cardamine hirsuta HOM05D004738 ORTHO05D006439 4.5e-160 568.5 450 64.4
Glyma.13G361400 Glycine max HOM05D004738 ORTHO05D006439 5.8e-160 568.2 453 64.2
AUR62011604 Chenopodium quinoa HOM05D004738 ORTHO05D006439 9.9e-160 567.4 381 70.3
Aqoxy7G03780 Aquilegia oxysepala HOM05D004738 ORTHO05D006439 1.3e-159 567.0 387 70.0
AL2G41120 Arabidopsis lyrata HOM05D004738 ORTHO05D006439 1.7e-159 566.6 449 63.0
BcaB05g25272 Brassica carinata HOM05D004738 ORTHO05D006439 2.2e-159 566.2 372 71.0
AUR62016418 Chenopodium quinoa HOM05D004738 ORTHO05D006439 2.2e-159 566.2 392 69.1
PGR102G2550 Punica granatum HOM05D004738 ORTHO05D006439 2.2e-159 566.2 389 68.9
Aa31LG4G650 Aethionema arabicum HOM05D004738 ORTHO05D006439 2.9e-159 565.8 415 66.0
arahy.Tifrunner.gnm1.ann1.S5ELWT Arachis hypogaea HOM05D004738 ORTHO05D006439 2.9e-159 565.8 387 71.6
Carub.0002s2719 Capsella rubella HOM05D004738 ORTHO05D006439 3.8e-159 565.5 396 69.9
THA.LOC104812476 Tarenaya hassleriana HOM05D004738 ORTHO05D006439 3.8e-159 565.5 393 69.5
BcaB02g07276 Brassica carinata HOM05D004738 ORTHO05D006439 1.9e-158 563.1 374 70.9
BolC2t09746H Brassica oleracea HOM05D004738 ORTHO05D006439 1.9e-158 563.1 394 68.3
THA.LOC104808210 Tarenaya hassleriana HOM05D004738 ORTHO05D006439 1.9e-158 563.1 396 69.2
A07p26650 Brassica napus HOM05D004738 ORTHO05D006439 3.2e-158 562.4 374 71.9
C06p29130 Brassica napus HOM05D004738 ORTHO05D006439 3.2e-158 562.4 374 71.7
BraA07t30308Z Brassica rapa HOM05D004738 ORTHO05D006439 5.4e-158 561.6 455 63.1
CsaV3_7G032950 Cucumis sativus L. HOM05D004738 ORTHO05D006439 7.1e-158 561.2 375 71.7
BcaC08g45309 Brassica carinata HOM05D004738 ORTHO05D006439 1.6e-157 560.1 454 63.0
C02p37360 Brassica napus HOM05D004738 ORTHO05D006439 1.6e-157 560.1 459 62.5
BolC6t38077H Brassica oleracea HOM05D004738 ORTHO05D006439 1.6e-157 560.1 454 63.0
Sed0002572 Sechium edule HOM05D004738 ORTHO05D006439 3.5e-157 558.9 426 65.7
C06p54140 Brassica napus HOM05D004738 ORTHO05D006439 6.0e-157 558.1 342 74.3
BraA02t07352Z Brassica rapa HOM05D004738 ORTHO05D006439 6.0e-157 558.1 449 62.4
BraA07t32032Z Brassica rapa HOM05D004738 ORTHO05D006439 6.0e-157 558.1 386 68.4
BcaC08g47585 Brassica carinata HOM05D004738 ORTHO05D006439 1.3e-156 557.0 385 68.1
A07p45280 Brassica napus HOM05D004738 ORTHO05D006439 1.3e-156 557.0 380 69.5
BcaB02g08689 Brassica carinata HOM05D004738 ORTHO05D006439 3.9e-156 555.4 429 63.6
EL10Ac9g21974 Beta vulgaris HOM05D004738 ORTHO05D006439 5.1e-156 555.1 398 67.6
Lj3g0001201 Lotus japonicus HOM05D004738 ORTHO05D006439 5.1e-156 555.1 394 68.3
Lalb_Chr22g0351141 Lupinus albus HOM05D004738 ORTHO05D006439 5.1e-156 555.1 406 67.7
A02p23600 Brassica napus HOM05D004738 ORTHO05D006439 6.7e-156 554.7 448 62.3
CDE06G1313 Ceratophyllum demersum HOM05D004738 ORTHO05D006439 1.9e-155 553.1 378 69.3
MELO3C023371.2 Cucumis melo HOM05D004738 ORTHO05D006439 3.3e-155 552.4 378 71.2
Os01g0682500 Oryza sativa ssp. japonica HOM05D004738 ORTHO05D006439 5.6e-155 551.6 362 70.4
MBI01_g13569_MAGBIO Magnolia biondii HOM05D004738 ORTHO05D006439 9.6e-155 550.8 366 69.7
PSO210G6241 Papaver somniferum HOM05D004738 ORTHO05D006439 1.3e-154 550.4 396 66.7
PSO210G3793 Papaver somniferum HOM05D004738 ORTHO05D006439 2.1e-154 549.7 396 66.4
Ah.01g021090 Amaranthus hybridus HOM05D004738 ORTHO05D006439 6.9e-153 544.7 356 71.6
BolC6t40426H Brassica oleracea HOM05D004738 ORTHO05D006439 9.9e-152 540.8 416 63.0
Gohir.D05G127900 Gossypium hirsutum HOM05D004738 ORTHO05D006439 2.9e-151 539.3 318 79.9
Zm00001eb267390 Zea mays HOM05D004738 ORTHO05D006439 2.3e-148 529.6 339 71.1
CSS0037007 Camellia sinensis var. sinensis HOM05D004738 ORTHO05D006439 3.0e-148 529.3 360 70.0
ClCG09G002360 Citrullus lanatus HOM05D004738 ORTHO05D006439 3.9e-148 528.9 369 69.1
Zm00001eb156570 Zea mays HOM05D004738 ORTHO05D006439 1.4e-145 520.4 352 69.0
ATR0083G024 Amborella trichopoda HOM05D004738 ORTHO05D006439 1.2e-144 517.3 337 71.2
Duzib192G0909 Durio zibethinus HOM05D004738 ORTHO05D006439 3.4e-144 515.8 350 72.0
Oeu033460.1 Olea europaea HOM05D004738 ORTHO05D006439 2.7e-133 479.6 330 71.8
unitig_21.g20511 Utricularia gibba HOM05D004738 ORTHO05D006439 1.4e-132 477.2 399 60.2
Pp3c18_16070 Physcomitrium patens HOM05D004738 ORTHO05D006439 3.0e-132 476.1 346 62.7
Nn2g11397 Nelumbo nucifera HOM05D004738 ORTHO05D006439 1.3e-130 470.7 355 63.1
HPP92_011481 Vanilla planifolia HOM05D004738 ORTHO05D006439 3.8e-127 459.1 351 64.7
AT1G80380 Arabidopsis thaliana HOM05D004738 ORTHO05D006439 4.2e-126 455.7 284 72.9
SEGI_20298 Sequoiadendron giganteum HOM05D004738 ORTHO05D006439 1.3e-122 444.1 422 53.1
AagrBONN_evm.TU.Sc2ySwM_368.190 Anthoceros agrestis HOM05D004738 ORTHO05D006439 1.3e-119 434.1 330 60.0
SHI09688 Sapria himalayana HOM05D004738 ORTHO05D006439 1.4e-118 430.6 335 60.9
SMO147G0425 Selaginella moellendorffii HOM05D004738 ORTHO05D006439 4.2e-118 429.1 336 58.9
BcaC03g15976 Brassica carinata HOM05D004738 ORTHO05D006439 4.7e-117 425.6 244 82.0
HPP92_011544 Vanilla planifolia HOM05D004738 ORTHO05D006439 5.2e-116 422.2 319 64.3
Psat5g299520 Pisum sativum HOM05D004738 ORTHO05D006439 2.0e-112 410.2 273 71.4
Mapoly0010s0209 Marchantia polymorpha HOM05D004738 ORTHO05D006439 4.5e-112 409.1 347 56.5
CBR_g49861 Chara braunii HOM05D004738 ORTHO05D006439 4.4e-107 392.5 331 53.5
Cre12.g542300 Chlamydomonas reinhardtii HOM05D004738 ORTHO05D006439 1.1e-89 334.7 332 48.2
MCO11G539 Micromonas commoda HOM05D004738 ORTHO05D006439 1.8e-84 317.4 342 46.5
arahy.Tifrunner.gnm1.ann1.7R7SHJ Arachis hypogaea HOM05D004738 ORTHO05D006439 1.3e-82 311.2 280 58.6
arahy.Tifrunner.gnm1.ann1.1FY4ZR Arachis hypogaea HOM05D004738 ORTHO05D007023 1.6e-77 294.3 272 58.5
PRCOL_00005044 Prasinoderma coloniale HOM05D004738 ORTHO05D006439 4.7e-77 292.7 326 47.5
Dinv38066 Davidia involucrata HOM05D004738 ORTHO05D006439 9.2e-65 251.9 145 81.4
Hund00584 Selenicereus undatus HOM05D004738 ORTHO05D006439 3.5e-56 223.4 125 80.0
arahy.Tifrunner.gnm1.ann1.CI84PE Arachis hypogaea HOM05D004738 ORTHO05D006439 2.6e-51 207.2 196 57.1
TAR636G0147 Trochodendron aralioides HOM05D004738 ORTHO05D051490 2.6e-35 154.1 164 42.1
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 7.6e-35 152.5 166 50.6
TAR636G3653 Trochodendron aralioides HOM05D004738 ORTHO05D051490 1.3e-34 151.8 164 41.5
Dinv38065 Davidia involucrata HOM05D004738 ORTHO05D006439 8.4e-34 149.1 87 79.3
Nn4g26563 Nelumbo nucifera HOM05D004738 ORTHO05D006439 2.5e-33 147.5 126 57.1
Ah.09g223940 Amaranthus hybridus HOM05D004738 ORTHO05D001643 9.6e-30 135.6 94 71.3
Sabra01G0149000 Salix brachista HOM05D004738 ORTHO05D006439 2.1e-24 117.9 75 72.0
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 6.3e-21 106.3 126 46.0
Nn1g05393 Nelumbo nucifera HOM05D004738 ORTHO05D280673 2.5e-14 84.3 90 46.7
Pp3c21_6430 Physcomitrium patens HOM05D004738 ORTHO05D314778 1.7e-10 71.6 70 47.1


User provided reference genes

Program Settings