Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G438.131 Capsicum annuum HOM05D006108 ORTHO05D007605 5.3e-47 190.7 95 100.0
Sopen03g038460 Solanum pennellii HOM05D006108 ORTHO05D007605 8.8e-34 146.7 92 82.6
PGSC0003DMG402005714 Solanum tuberosum HOM05D006108 ORTHO05D007605 7.4e-33 143.7 92 82.6
Nitab4.5_0001599g0060 Nicotiana tabacum HOM05D006108 ORTHO05D007605 1.3e-29 132.9 89 77.5
Peaxi162Scf00015g00844 Petunia axillaris HOM05D006108 ORTHO05D007605 1.2e-27 126.3 89 76.4
Nitab4.5_0004412g0100 Nicotiana tabacum HOM05D006108 ORTHO05D007605 1.7e-21 105.9 63 85.7
Lj2g0017619 Lotus japonicus HOM05D006108 ORTHO05D007605 2.0e-14 82.4 63 65.1
TPR.G35239 Trifolium pratense HOM05D006108 ORTHO05D007605 2.0e-14 82.4 61 63.9
Gohir.A09G177600 Gossypium hirsutum HOM05D006108 ORTHO05D007605 3.8e-13 78.2 60 68.3
Thecc.03G033400 Theobroma cacao HOM05D006108 ORTHO05D007605 3.8e-13 78.2 77 51.9
Gohir.D09G173100 Gossypium hirsutum HOM05D006108 ORTHO05D007605 5.0e-13 77.8 60 66.7
Gorai.006G195000 Gossypium raimondii HOM05D006108 ORTHO05D007605 5.0e-13 77.8 60 66.7
GSVIVG01008271001 Vitis vinifera HOM05D006108 ORTHO05D007605 5.0e-13 77.8 62 64.5
Prupe.5G220300 Prunus persica HOM05D006108 ORTHO05D007605 6.5e-13 77.4 71 62.0
QL10p025064 Quercus lobata HOM05D006108 ORTHO05D007605 8.6e-13 77.0 66 62.1
VMungo0464G0155 Vigna mungo HOM05D006108 ORTHO05D007605 1.1e-12 76.6 74 52.7
Psat6g222560 Pisum sativum HOM05D006108 ORTHO05D007605 1.5e-12 76.3 59 64.4
Glyma.09G185400 Glycine max HOM05D006108 ORTHO05D007605 1.9e-12 75.9 74 52.7
Glyma.07G090500 Glycine max HOM05D006108 ORTHO05D007605 3.2e-12 75.1 74 54.1
Phvul.004G158700 Phaseolus vulgaris HOM05D006108 ORTHO05D007605 3.2e-12 75.1 74 52.7
Cc11_g10300 Coffea canephora HOM05D006108 ORTHO05D007605 5.5e-12 74.3 88 51.1
MD14G1225800 Malus domestica HOM05D006108 ORTHO05D007605 5.5e-12 74.3 74 58.1
MD06G1214900 Malus domestica HOM05D006108 ORTHO05D007605 7.2e-12 73.9 87 52.9
Atru.chr9.818 Acer truncatum HOM05D006108 ORTHO05D007605 9.5e-12 73.6 46 78.3
FvH4_5g12320 Fragaria vesca HOM05D006108 ORTHO05D007605 9.5e-12 73.6 81 51.9
FAN18G0723 Fragaria x ananassa HOM05D006108 ORTHO05D007605 9.5e-12 73.6 81 51.9
FAN18G1336 Fragaria x ananassa HOM05D006108 ORTHO05D007605 9.5e-12 73.6 81 51.9
Manes.05G140027 Manihot esculenta HOM05D006108 ORTHO05D007605 9.5e-12 73.6 47 76.6
arahy.Tifrunner.gnm1.ann1.1V8BDZ Arachis hypogaea HOM05D006108 ORTHO05D007605 1.2e-11 73.2 80 53.8
Duzib084G1067 Durio zibethinus HOM05D006108 ORTHO05D007605 1.2e-11 73.2 81 51.9
MD13G1043700 Malus domestica HOM05D006108 ORTHO05D007605 2.1e-11 72.4 67 55.2
Prupe.1G308800 Prunus persica HOM05D006108 ORTHO05D007605 4.7e-11 71.2 67 56.7
Sed0021850 Sechium edule HOM05D006108 ORTHO05D007605 4.7e-11 71.2 76 52.6
arahy.Tifrunner.gnm1.ann1.L19XPP Arachis hypogaea HOM05D006108 ORTHO05D007605 6.1e-11 70.9 65 58.5
Gohir.A09G047400 Gossypium hirsutum HOM05D006108 ORTHO05D007605 6.1e-11 70.9 62 58.1
Gohir.D09G048600 Gossypium hirsutum HOM05D006108 ORTHO05D007605 6.1e-11 70.9 62 58.1
Gorai.006G061500 Gossypium raimondii HOM05D006108 ORTHO05D007605 6.1e-11 70.9 62 58.1
ClCG04G011190 Citrullus lanatus HOM05D006108 ORTHO05D007605 1.4e-10 69.7 85 47.1
Dinv09807 Davidia involucrata HOM05D006108 ORTHO05D007605 1.4e-10 69.7 46 76.1
Eucgr.B00718 Eucalyptus grandis HOM05D006108 ORTHO05D007605 1.4e-10 69.7 53 64.2
CsaV3_1G006560 Cucumis sativus L. HOM05D006108 ORTHO05D007605 1.8e-10 69.3 90 44.4
TAR371G1266 Trochodendron aralioides HOM05D006108 ORTHO05D007605 1.8e-10 69.3 55 63.6
Actinidia35084 Actinidia chinensis HOM05D006108 ORTHO05D007605 3.0e-10 68.6 67 56.7
COL.COLO4_07905 Corchorus olitorius HOM05D001580 ORTHO05D001517 3.0e-10 68.6 62 56.5
Eucgr.B03028 Eucalyptus grandis HOM05D006108 ORTHO05D007605 3.0e-10 68.6 60 63.3
FAN13G1808 Fragaria x ananassa HOM05D006108 ORTHO05D007605 4.0e-10 68.2 45 75.6
DCAR_026728 Daucus carota HOM05D006108 ORTHO05D007605 5.2e-10 67.8 58 63.8
Duzib248G0641 Durio zibethinus HOM05D006108 ORTHO05D007605 5.2e-10 67.8 62 59.7
RcHm_v2.0_Chr4g0435471 Rosa chinensis HOM05D006108 ORTHO05D007605 5.2e-10 67.8 61 55.7
RcHm_v2.0_Chr7g0185241 Rosa chinensis HOM05D006108 ORTHO05D007605 6.8e-10 67.4 69 55.1
Cpa.g.sc1.185 Carica papaya HOM05D006108 ORTHO05D007605 8.8e-10 67.0 62 51.6
Nn3g17803 Nelumbo nucifera HOM05D006108 ORTHO05D007605 8.8e-10 67.0 62 58.1
TWI15G1195 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 1.2e-09 66.6 44 75.0
Ciclev10022919m.g Citrus clementina HOM05D006108 ORTHO05D007605 1.5e-09 66.2 88 45.5
Oeu041896.1 Olea europaea HOM05D006108 ORTHO05D007605 2.0e-09 65.9 49 63.3
Psat2g097920 Pisum sativum HOM05D006108 ORTHO05D007605 2.0e-09 65.9 51 64.7
FAN08G0393 Fragaria x ananassa HOM05D006108 ORTHO05D007605 2.6e-09 65.5 72 52.8
Nn4g23806 Nelumbo nucifera HOM05D006108 ORTHO05D007605 2.6e-09 65.5 62 53.2
Rhsim12G0143800 Rhododendron simsii HOM05D006108 ORTHO05D007605 2.6e-09 65.5 46 71.7
Lsat_1_v5_gn_8_39200 Lactuca sativa HOM05D006108 ORTHO05D007605 3.4e-09 65.1 47 63.8
Lalb_Chr10g0099931 Lupinus albus HOM05D006108 ORTHO05D007605 3.4e-09 65.1 55 58.2
Medtr5g055190 Medicago truncatula HOM05D006108 ORTHO05D007605 3.4e-09 65.1 57 56.1
Ciclev10033455m.g Citrus clementina HOM05D006108 ORTHO05D007605 4.4e-09 64.7 63 52.4
Manes.14G100500 Manihot esculenta HOM05D006108 ORTHO05D007605 4.4e-09 64.7 62 50.0
Oeu008040.1 Olea europaea HOM05D006108 ORTHO05D007605 4.4e-09 64.7 48 64.6
PSO017G5628 Papaver somniferum HOM05D006108 ORTHO05D007605 4.4e-09 64.7 52 59.6
Sc14g0007540 Simmondsia chinensis HOM05D006108 ORTHO05D007605 4.4e-09 64.7 69 52.2
Rhsim09G0109500 Rhododendron simsii HOM05D006290 ORTHO05D007734 5.7e-09 64.3 86 45.3
arahy.Tifrunner.gnm1.ann1.384K0G Arachis hypogaea HOM05D006108 ORTHO05D007605 7.5e-09 63.9 56 57.1
Manes.06G070100 Manihot esculenta HOM05D006108 ORTHO05D007605 7.5e-09 63.9 45 62.2
Potri.008G119200 Populus trichocarpa HOM05D006108 ORTHO05D007605 7.5e-09 63.9 54 59.3
Cfa019791 Carpinus fangiana HOM05D006108 ORTHO05D007605 9.8e-09 63.5 59 57.6
ECA233G5877 Erigeron canadensis HOM05D006108 ORTHO05D007605 9.8e-09 63.5 54 57.4
FAN07G1587 Fragaria x ananassa HOM05D006108 ORTHO05D007605 9.8e-09 63.5 61 52.5
FAN12G0874 Fragaria x ananassa HOM05D006108 ORTHO05D007605 9.8e-09 63.5 60 53.3
FAN22G0059 Fragaria x ananassa HOM05D006108 ORTHO05D007605 9.8e-09 63.5 61 52.5
CSS0049683 Camellia sinensis var. sinensis HOM05D006108 ORTHO05D007605 1.3e-08 63.2 46 67.4
HanXRQChr02g0058721 Helianthus annuus HOM05D006108 ORTHO05D007605 1.3e-08 63.2 60 55.0
MD16G1044500 Malus domestica HOM05D006108 ORTHO05D007605 1.3e-08 63.2 66 48.5
Lj2g0013090 Lotus japonicus HOM05D006108 ORTHO05D007605 1.7e-08 62.8 42 71.4
Thhalv10005176m.g Eutrema salsugineum HOM05D006108 ORTHO05D007605 2.2e-08 62.4 46 60.9
BcaB07g30252 Brassica carinata HOM05D006108 ORTHO05D007605 2.8e-08 62.0 46 60.9
Dinv04481 Davidia involucrata HOM05D001580 ORTHO05D001517 2.8e-08 62.0 60 51.7
Sp2g15090 Schrenkiella parvula HOM05D006108 ORTHO05D007605 2.8e-08 62.0 46 58.7
TWI79G0681 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 2.8e-08 62.0 44 63.6
Os09g0408550 Oryza sativa ssp. japonica HOM05D006108 ORTHO05D007605 3.7e-08 61.6 44 65.9
TPR.G38355 Trifolium pratense HOM05D006108 ORTHO05D007605 3.7e-08 61.6 57 54.4
Zm00001eb099300 Zea mays HOM05D006108 ORTHO05D007605 3.7e-08 61.6 58 55.2
CiPaw.15G129300 Carya illinoinensis HOM05D006108 ORTHO05D007605 4.9e-08 61.2 44 68.2
CDE05G0497 Ceratophyllum demersum HOM05D006108 ORTHO05D007605 4.9e-08 61.2 46 63.0
Sabra08G0090500 Salix brachista HOM05D006108 ORTHO05D007605 4.9e-08 61.2 57 54.4
CARHR146800 Cardamine hirsuta HOM05D006108 ORTHO05D007605 6.3e-08 60.8 56 51.8
Gohir.A12G168100 Gossypium hirsutum HOM05D006108 ORTHO05D007605 6.3e-08 60.8 56 58.9
Gorai.008G184200 Gossypium raimondii HOM05D006108 ORTHO05D007605 6.3e-08 60.8 56 58.9
Hund05757 Selenicereus undatus HOM05D006108 ORTHO05D007605 6.3e-08 60.8 58 55.2
BcaC03g17291 Brassica carinata HOM05D006108 ORTHO05D007605 1.1e-07 60.1 46 58.7
A02p34100 Brassica napus HOM05D006108 ORTHO05D007605 1.1e-07 60.1 46 58.7
C02p52370 Brassica napus HOM05D006108 ORTHO05D007605 1.1e-07 60.1 46 58.7
BolC2t11319H Brassica oleracea HOM05D006108 ORTHO05D007605 1.1e-07 60.1 46 58.7
BraA02t08427Z Brassica rapa HOM05D006108 ORTHO05D007605 1.1e-07 60.1 46 58.7
QL01p043861 Quercus lobata HOM05D006108 ORTHO05D007605 1.1e-07 60.1 51 56.9
CiPaw.15G083500 Carya illinoinensis HOM05D006108 ORTHO05D007605 1.4e-07 59.7 46 58.7
A06p42440 Brassica napus HOM05D006108 ORTHO05D007605 1.8e-07 59.3 45 55.6
BraA06t27159Z Brassica rapa HOM05D006108 ORTHO05D007605 1.8e-07 59.3 45 55.6
TWI31G1391 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 1.8e-07 59.3 54 53.7
FAN04G0077 Fragaria x ananassa HOM05D006108 ORTHO05D007605 2.4e-07 58.9 38 76.3
THA.LOC104824033 Tarenaya hassleriana HOM05D006108 ORTHO05D007605 2.4e-07 58.9 43 65.1
Migut.L01077 Erythranthe guttata HOM05D006108 ORTHO05D007605 3.1e-07 58.5 44 65.9
Gohir.D12G171700 Gossypium hirsutum HOM05D006108 ORTHO05D007605 3.1e-07 58.5 56 57.1
Sed0000256 Sechium edule HOM05D006108 ORTHO05D007605 3.1e-07 58.5 45 60.0
Carub.0005s0368 Capsella rubella HOM05D006108 ORTHO05D007605 4.1e-07 58.2 90 37.8
AL5G14490 Arabidopsis lyrata HOM05D006108 ORTHO05D007605 5.4e-07 57.8 46 54.3
BcaC06g33947 Brassica carinata HOM05D006108 ORTHO05D007605 5.4e-07 57.8 57 45.6
Sed0027931 Sechium edule HOM05D006108 ORTHO05D007605 7.0e-07 57.4 44 59.1
C07p34870 Brassica napus HOM05D006108 ORTHO05D007605 9.2e-07 57.0 57 45.6
Phvul.003G034700 Phaseolus vulgaris HOM05D006108 ORTHO05D007605 9.2e-07 57.0 51 54.9
PGR102G2516 Punica granatum HOM05D006108 ORTHO05D007605 9.2e-07 57.0 56 53.6
CsaV3_6G003400 Cucumis sativus L. HOM05D006108 ORTHO05D007605 1.2e-06 56.6 69 43.5
BolC7t44019H Brassica oleracea HOM05D006108 ORTHO05D007605 1.6e-06 56.2 57 45.6
Glyma.01G082600 Glycine max HOM05D006108 ORTHO05D007605 2.0e-06 55.8 51 54.9
Nitab4.5_0003285g0040 Nicotiana tabacum HOM05D006108 ORTHO05D007605 2.0e-06 55.8 61 49.2
AT3G25855 Arabidopsis thaliana HOM05D006108 ORTHO05D007605 3.5e-06 55.1 59 44.1
CAN.G388.38 Capsicum annuum HOM05D006108 ORTHO05D007605 4.5e-06 54.7 43 58.1
BcaC06g31111 Brassica carinata HOM05D006108 ORTHO05D007605 5.9e-06 54.3 46 47.8
ClCG08G005220 Citrullus lanatus HOM05D006108 ORTHO05D007605 5.9e-06 54.3 44 54.5
Nitab4.5_0001914g0010 Nicotiana tabacum HOM05D006108 ORTHO05D007605 5.9e-06 54.3 43 58.1


User provided reference genes

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