Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G437.9 Capsicum annuum HOM05D003575 ORTHO05D003587 8.4e-91 337.0 174 100.0
CAN.G437.6 Capsicum annuum HOM05D003575 ORTHO05D003587 8.5e-67 257.3 162 81.5
PGSC0003DMG400017406 Solanum tuberosum HOM05D003575 ORTHO05D003587 5.7e-63 244.6 181 74.6
Solyc07g045320.3 Solanum lycopersicum HOM05D003575 ORTHO05D003587 2.0e-60 236.1 172 73.8
Sopen07g023850 Solanum pennellii HOM05D003575 ORTHO05D003587 1.4e-58 229.9 172 70.9
Nitab4.5_0009864g0030 Nicotiana tabacum HOM05D003575 ORTHO05D003587 5.0e-43 178.3 162 64.2
Peaxi162Scf00802g00028 Petunia axillaris HOM05D003575 ORTHO05D003587 1.2e-39 167.2 162 61.7
Nitab4.5_0004644g0050 Nicotiana tabacum HOM05D003575 ORTHO05D003587 9.7e-39 164.1 181 53.6
Nitab4.5_0000622g0080 Nicotiana tabacum HOM05D003575 ORTHO05D003587 3.7e-38 162.2 181 51.9
PGSC0003DMG401004292 Solanum tuberosum HOM05D003575 ORTHO05D003587 2.0e-36 156.4 177 52.0
Sopen12g002030 Solanum pennellii HOM05D003575 ORTHO05D003587 1.5e-34 150.2 177 50.8
Solyc12g006060.2 Solanum lycopersicum HOM05D003575 ORTHO05D003587 2.5e-34 149.4 177 50.8
Peaxi162Scf00047g02035 Petunia axillaris HOM05D003575 ORTHO05D003587 3.6e-33 145.6 164 52.4
Hma1.2p1_0599F.1_g187070 Hydrangea macrophylla HOM05D003575 ORTHO05D003587 7.3e-18 94.7 192 33.9
Migut.L00790 Erythranthe guttata HOM05D003575 ORTHO05D003587 1.2e-17 94.0 182 39.6
TAR626G1391 Trochodendron aralioides HOM05D003575 ORTHO05D003587 1.2e-17 94.0 194 34.5
Sabra02G0168700 Salix brachista HOM05D003575 ORTHO05D003587 2.6e-15 86.3 166 32.5
Lsat_1_v5_gn_7_97960 Lactuca sativa HOM05D003575 ORTHO05D003587 7.5e-15 84.7 167 32.9
CDE04G2197 Ceratophyllum demersum HOM05D003575 ORTHO05D003587 1.3e-14 84.0 186 31.7
vmacro12070 Vaccinium macrocarpon HOM05D003575 ORTHO05D003587 1.7e-14 83.6 163 31.3
Actinidia07857 Actinidia chinensis HOM05D003575 ORTHO05D003587 2.2e-14 83.2 187 31.0
SalBow1G3222 Salvia bowleyana HOM05D003575 ORTHO05D003587 2.2e-14 83.2 194 30.9
CSS0012601 Camellia sinensis var. sinensis HOM05D003575 ORTHO05D003587 2.9e-14 82.8 168 33.3
CSS0035464 Camellia sinensis var. sinensis HOM05D003575 ORTHO05D003587 2.9e-14 82.8 168 33.3
ECA236G0897 Erigeron canadensis HOM05D003575 ORTHO05D003587 8.3e-14 81.3 177 31.1
SGA_v2.0_scaffold407G51066 Striga asiatica HOM05D003575 ORTHO05D003587 1.8e-13 80.1 212 28.3
Thecc.01G197600 Theobroma cacao HOM05D003575 ORTHO05D003587 2.4e-13 79.7 183 30.6
Haze_12614 Corylus avellana HOM05D003366 ORTHO05D004045 5.4e-13 78.6 169 34.3
DCAR_019672 Daucus carota HOM05D003575 ORTHO05D003587 7.0e-13 78.2 172 29.7
Aqoxy5G03850 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 1.2e-12 77.4 175 32.0
Potri.002G216900 Populus trichocarpa HOM05D003575 ORTHO05D003587 1.2e-12 77.4 166 34.3
Lsat_1_v5_gn_7_97980 Lactuca sativa HOM05D000074 ORTHO05D001293 3.5e-12 75.9 134 37.3
Nn1g03152 Nelumbo nucifera HOM05D003575 ORTHO05D003587 3.5e-12 75.9 179 34.6
Dinv21311 Davidia involucrata HOM05D003575 ORTHO05D003587 4.6e-12 75.5 173 31.8
MBI15_g44598_MAGBIO Magnolia biondii HOM05D003575 ORTHO05D003587 7.8e-12 74.7 176 31.2
Manes.12G063604 Manihot esculenta HOM05D003575 ORTHO05D003587 7.8e-12 74.7 177 28.8
COL.COLO4_19638 Corchorus olitorius HOM05D003575 ORTHO05D003587 1.0e-11 74.3 87 42.5
TWI36G1168 Tripterygium wilfordii HOM05D003575 ORTHO05D003587 1.7e-11 73.6 183 29.5
Aqoxy5G03849 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 2.3e-11 73.2 97 38.1
MSTRG.426 Avicennia marina HOM05D003575 ORTHO05D003587 3.9e-11 72.4 207 30.0
TWI18G0759 Tripterygium wilfordii HOM05D003575 ORTHO05D003587 3.9e-11 72.4 178 31.5
Haze_12603 Corylus avellana HOM05D003366 ORTHO05D004045 5.0e-11 72.0 164 32.9
HanXRQChr04g0126411 Helianthus annuus HOM05D003575 ORTHO05D003587 5.0e-11 72.0 165 32.1
QL04p067739 Quercus lobata HOM05D003575 ORTHO05D003587 5.0e-11 72.0 174 31.6
MBI15_g48140_MAGBIO Magnolia biondii HOM05D003575 ORTHO05D003587 8.6e-11 71.2 95 42.1
FvH4_5g23730 Fragaria vesca HOM05D003575 ORTHO05D003587 1.1e-10 70.9 87 42.5
Cc00_g01040 Coffea canephora HOM05D003575 ORTHO05D003587 1.9e-10 70.1 89 46.1
ECA236G1196 Erigeron canadensis HOM05D003366 ORTHO05D004045 1.9e-10 70.1 107 38.3
HanXRQChr04g0126401 Helianthus annuus HOM05D003575 ORTHO05D003587 1.9e-10 70.1 165 31.5
Medtr3g082740 Medicago truncatula HOM05D003575 ORTHO05D003587 2.5e-10 69.7 170 28.8
FAN18G1810 Fragaria x ananassa HOM05D003575 ORTHO05D003587 3.3e-10 69.3 162 32.7
CiPaw.04G197600 Carya illinoinensis HOM05D003575 ORTHO05D003587 4.3e-10 68.9 170 29.4
Lj6g0014157 Lotus japonicus HOM05D003575 ORTHO05D003587 4.3e-10 68.9 86 43.0
Lalb_Chr14g0362581 Lupinus albus HOM05D003575 ORTHO05D003587 4.3e-10 68.9 180 30.0
Oeu029955.1 Olea europaea HOM05D003575 ORTHO05D003587 4.3e-10 68.9 181 29.8
PSO675G6399 Papaver somniferum HOM05D003575 ORTHO05D003587 5.6e-10 68.6 84 44.0
MELO3C030470.2 Cucumis melo HOM05D003575 ORTHO05D003587 7.3e-10 68.2 87 40.2
VMungo0647G0230 Vigna mungo HOM05D003575 ORTHO05D003587 7.3e-10 68.2 86 41.9
FAN18G2204 Fragaria x ananassa HOM05D003575 ORTHO05D003587 9.5e-10 67.8 168 32.1
HanXRQChr16g0520571 Helianthus annuus HOM05D003575 ORTHO05D003587 1.2e-09 67.4 159 32.1
Rhsim06G0177900 Rhododendron simsii HOM05D003575 ORTHO05D003587 1.2e-09 67.4 157 34.4
PSO541G2609 Papaver somniferum HOM05D003575 ORTHO05D003587 2.1e-09 66.6 76 46.1
RcHm_v2.0_Chr7g0213061 Rosa chinensis HOM05D003575 ORTHO05D003587 2.8e-09 66.2 87 39.1
SHI10168 Sapria himalayana HOM05D003575 ORTHO05D003587 2.8e-09 66.2 74 40.5
CsaV3_3G046180 Cucumis sativus L. HOM05D003575 ORTHO05D003587 3.6e-09 65.9 97 38.1
Duzib133G0340 Durio zibethinus HOM05D003575 ORTHO05D003587 3.6e-09 65.9 163 27.6
Gohir.D07G092200 Gossypium hirsutum HOM05D003575 ORTHO05D003587 3.6e-09 65.9 184 27.2
Gorai.001G098800 Gossypium raimondii HOM05D003575 ORTHO05D003587 3.6e-09 65.9 179 25.7
Medtr3g082720 Medicago truncatula HOM05D003575 ORTHO05D003587 3.6e-09 65.9 86 40.7
Sed0014379 Sechium edule HOM05D003575 ORTHO05D003587 3.6e-09 65.9 92 38.0
Aqoxy4G01549 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 4.7e-09 65.5 75 41.3
Gohir.A07G087300 Gossypium hirsutum HOM05D003575 ORTHO05D003587 4.7e-09 65.5 87 35.6
Medtr6g042090 Medicago truncatula HOM05D003575 ORTHO05D003587 4.7e-09 65.5 170 27.1
Ciclev10015675m.g Citrus clementina HOM05D003575 ORTHO05D003587 6.2e-09 65.1 163 30.7
Glyma.13G186300 Glycine max HOM05D003575 ORTHO05D003587 1.1e-08 64.3 85 37.6
Gohir.A11G148300 Gossypium hirsutum HOM05D003575 ORTHO05D003587 1.1e-08 64.3 85 38.8
RcHm_v2.0_Chr2g0155791 Rosa chinensis HOM05D003575 ORTHO05D003587 1.1e-08 64.3 86 34.9
FvH4_3g20450 Fragaria vesca HOM05D039614 ORTHO05D045963 1.4e-08 63.9 85 36.5
FAN11G0216 Fragaria x ananassa HOM05D003575 ORTHO05D045963 1.4e-08 63.9 85 36.5
FAN16G3603 Fragaria x ananassa HOM05D003575 ORTHO05D003587 2.3e-08 63.2 74 39.2
FAN21G1295 Fragaria x ananassa HOM05D003575 ORTHO05D003587 2.3e-08 63.2 74 39.2
MD09G1128800 Malus domestica HOM05D003575 ORTHO05D003587 3.1e-08 62.8 72 43.1
MD17G1118100 Malus domestica HOM05D003575 ORTHO05D003587 3.1e-08 62.8 156 30.1
Prupe.3G196500 Prunus persica HOM05D003575 ORTHO05D003587 3.1e-08 62.8 94 37.2
TPR.G40538 Trifolium pratense HOM05D003575 ORTHO05D003587 3.1e-08 62.8 73 42.5
Phvul.007G122046 Phaseolus vulgaris HOM05D003575 ORTHO05D003587 4.0e-08 62.4 86 39.5
Phvul.011G189400 Phaseolus vulgaris HOM05D003575 ORTHO05D003587 4.0e-08 62.4 187 26.7
Ah.01g002520 Amaranthus hybridus HOM05D004224 ORTHO05D006437 5.2e-08 62.0 168 28.6
FvH4_3g17720 Fragaria vesca HOM05D003575 ORTHO05D003587 6.8e-08 61.6 76 36.8
Gorai.007G165400 Gossypium raimondii HOM05D003575 ORTHO05D003587 6.8e-08 61.6 174 28.7
FAN11G2840 Fragaria x ananassa HOM05D003575 ORTHO05D003587 8.9e-08 61.2 74 37.8
Hund01540 Selenicereus undatus HOM05D003575 ORTHO05D003587 8.9e-08 61.2 74 39.2
FvH4_6g40530 Fragaria vesca HOM05D003575 ORTHO05D003587 1.2e-07 60.8 86 34.9
FAN14G3058 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.2e-07 60.8 86 34.9
Gohir.D11G155100 Gossypium hirsutum HOM05D003575 ORTHO05D003587 1.5e-07 60.5 174 28.2
Psat5g104640 Pisum sativum HOM05D003575 ORTHO05D003587 2.0e-07 60.1 170 26.5
TPR.G22472 Trifolium pratense HOM05D003575 ORTHO05D003587 2.0e-07 60.1 178 28.7
ClCG02G002950 Citrullus lanatus HOM05D003575 ORTHO05D003587 3.4e-07 59.3 87 34.5
FAN14G2021 Fragaria x ananassa HOM05D003575 ORTHO05D003587 4.4e-07 58.9 85 36.5
Glyma.13G007400 Glycine max HOM05D003575 ORTHO05D003587 5.8e-07 58.5 86 37.2
Ca_16343_v3 Cicer arietinum L. HOM05D003575 ORTHO05D003587 7.5e-07 58.2 165 27.9
FvH4_6g40520 Fragaria vesca HOM05D003575 ORTHO05D003587 7.5e-07 58.2 85 36.5
Sed0014111 Sechium edule HOM05D003575 ORTHO05D003587 7.5e-07 58.2 80 35.0
FAN15G3143 Fragaria x ananassa HOM05D003575 ORTHO05D003587 9.8e-07 57.8 85 35.3
arahy.Tifrunner.gnm1.ann1.04VE6P Arachis hypogaea HOM05D003575 ORTHO05D003587 1.3e-06 57.4 181 26.0
FvH4_2g12920 Fragaria vesca HOM05D003575 ORTHO05D003587 1.3e-06 57.4 85 35.3
FAN20G0397 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.3e-06 57.4 85 35.3
FAN24G1566 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.3e-06 57.4 85 35.3
RcHm_v2.0_Chr2g0155771 Rosa chinensis HOM05D003575 ORTHO05D003587 2.2e-06 56.6 71 39.4
FvH4_6g40510 Fragaria vesca HOM05D003575 ORTHO05D003587 2.9e-06 56.2 101 31.7
arahy.Tifrunner.gnm1.ann1.F2CSMS Arachis hypogaea HOM05D003575 ORTHO05D003587 6.4e-06 55.1 181 25.4
arahy.Tifrunner.gnm1.ann1.RMR7W1 Arachis hypogaea HOM05D003575 ORTHO05D003587 6.4e-06 55.1 181 25.4
Glyma.15G224002 Glycine max HOM05D003575 ORTHO05D003587 6.4e-06 55.1 73 38.4


User provided reference genes

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