Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G437.20 Capsicum annuum HOM05D000654 ORTHO05D002330 3.4e-76 288.9 228 100.0
CAN.G385.11 Capsicum annuum HOM05D000654 ORTHO05D002330 2.5e-26 123.2 94 72.3
CAN.G640.1 Capsicum annuum HOM05D000654 ORTHO05D002330 4.4e-23 112.5 88 72.7
CAN.G802.3 Capsicum annuum HOM05D000654 ORTHO05D002330 6.4e-22 108.6 88 70.5
CAN.G27.45 Capsicum annuum HOM05D000654 ORTHO05D002330 4.6e-20 102.4 86 70.9
Solyc06g060320.4 Solanum lycopersicum HOM05D000654 ORTHO05D002330 6.6e-19 98.6 85 68.2
CAN.G1666.1 Capsicum annuum HOM05D000654 ORTHO05D002330 8.6e-19 98.2 87 65.5
CAN.G938.4 Capsicum annuum HOM05D000654 ORTHO05D002330 8.6e-19 98.2 92 64.1
Sopen06g020440 Solanum pennellii HOM05D000654 ORTHO05D002330 1.1e-18 97.8 85 68.2
CAN.G537.9 Capsicum annuum HOM05D000654 ORTHO05D002330 5.6e-18 95.5 63 82.5
Nitab4.5_0000322g0170 Nicotiana tabacum HOM05D000654 ORTHO05D002330 1.4e-16 90.9 85 62.4
Nitab4.5_0004044g0010 Nicotiana tabacum HOM05D000654 ORTHO05D002330 2.3e-16 90.1 85 62.4
Peaxi162Scf00051g00107 Petunia axillaris HOM05D000654 ORTHO05D002330 2.6e-15 86.7 85 62.4
Nitab4.5_0001803g0040 Nicotiana tabacum HOM05D000654 ORTHO05D002330 2.2e-14 83.6 68 64.7
Hma1.2p1_0129F.1_g060210 Hydrangea macrophylla HOM05D000654 ORTHO05D002330 4.9e-14 82.4 90 52.2
Nitab4.5_0001996g0070 Nicotiana tabacum HOM05D000654 ORTHO05D002330 2.4e-13 80.1 68 63.2
PGSC0003DMG400000896 Solanum tuberosum HOM05D000654 ORTHO05D002330 7.1e-13 78.6 90 53.3
Sopen11g007600 Solanum pennellii HOM05D000654 ORTHO05D002330 1.6e-12 77.4 90 52.2
Actinidia02621 Actinidia chinensis HOM05D000654 ORTHO05D002330 5.1e-11 72.4 68 60.3
Hma1.2p1_1519F.1_g288570 Hydrangea macrophylla HOM05D000654 ORTHO05D002330 6.6e-11 72.0 65 69.2
MSTRG.1439 Avicennia marina HOM05D000654 ORTHO05D002330 8.6e-11 71.6 68 57.4
MSTRG.25380 Avicennia marina HOM05D000654 ORTHO05D002330 8.6e-11 71.6 68 54.4
QL10p040142 Quercus lobata HOM05D000654 ORTHO05D002330 8.6e-11 71.6 54 74.1
Potri.005G178100 Populus trichocarpa HOM05D000654 ORTHO05D002330 1.1e-10 71.2 68 57.4
Lj7C341T3 Lonicera japonica HOM05D000654 ORTHO05D002330 1.5e-10 70.9 90 47.8
Lju12250C0T2 Lonicera japonica HOM05D000654 ORTHO05D002330 1.5e-10 70.9 90 47.8
SalBow7G1808 Salvia bowleyana HOM05D000654 ORTHO05D002330 1.5e-10 70.9 68 54.4
Migut.N03280 Erythranthe guttata HOM05D000654 ORTHO05D002330 2.5e-10 70.1 68 57.4
GSVIVG01022370001 Vitis vinifera HOM05D000654 ORTHO05D002330 2.5e-10 70.1 54 72.2
Dinv07217 Davidia involucrata HOM05D000654 ORTHO05D002330 3.3e-10 69.7 64 62.5
HanXRQChr05g0151081 Helianthus annuus HOM05D000654 ORTHO05D002330 3.3e-10 69.7 90 48.9
Rhsim06G0103200 Rhododendron simsii HOM05D000654 ORTHO05D002330 4.3e-10 69.3 90 50.0
TAR376G0691 Trochodendron aralioides HOM05D000654 ORTHO05D002330 7.3e-10 68.6 68 57.4
Aqoxy6G00220 Aquilegia oxysepala HOM05D000654 ORTHO05D002330 9.5e-10 68.2 69 58.0
CiPaw.03G115400 Carya illinoinensis HOM05D000654 ORTHO05D002330 9.5e-10 68.2 54 72.2
vmacro12533 Vaccinium macrocarpon HOM05D000654 ORTHO05D002330 9.5e-10 68.2 68 57.4
vmacro12770 Vaccinium macrocarpon HOM05D000654 ORTHO05D002330 9.5e-10 68.2 61 67.2
Actinidia16515 Actinidia chinensis HOM05D000654 ORTHO05D002330 1.6e-09 67.4 57 68.4
Dinv40960 Davidia involucrata HOM05D000654 ORTHO05D002330 1.6e-09 67.4 57 68.4
Sabra02G0065400 Salix brachista HOM05D000654 ORTHO05D002330 1.6e-09 67.4 68 55.9
Manes.02G163500 Manihot esculenta HOM05D000654 ORTHO05D002330 2.1e-09 67.0 68 54.4
COL.COLO4_12114 Corchorus olitorius HOM05D000654 ORTHO05D002330 2.8e-09 66.6 58 62.1
Dinv27310 Davidia involucrata HOM05D000654 ORTHO05D002330 2.8e-09 66.6 90 46.7
ECA246G2305 Erigeron canadensis HOM05D000654 ORTHO05D002330 2.8e-09 66.6 79 54.4
CiPaw.05G221200 Carya illinoinensis HOM05D000654 ORTHO05D002330 3.6e-09 66.2 98 50.0
TAR381G0379 Trochodendron aralioides HOM05D000654 ORTHO05D002330 3.6e-09 66.2 68 60.3
GSVIVG01008864001 Vitis vinifera HOM05D000654 ORTHO05D002330 3.6e-09 66.2 90 47.8
HanXRQChr10g0304071 Helianthus annuus HOM05D000654 ORTHO05D002330 4.7e-09 65.9 77 55.8
CiPaw.04G077200 Carya illinoinensis HOM05D000654 ORTHO05D002330 6.2e-09 65.5 54 72.2
Potri.002G083400 Populus trichocarpa HOM05D000654 ORTHO05D002330 6.2e-09 65.5 68 52.9
Rhsim10G0129600 Rhododendron simsii HOM05D000654 ORTHO05D002330 6.2e-09 65.5 65 63.1
Cc10_g11930 Coffea canephora HOM05D000654 ORTHO05D002330 8.1e-09 65.1 85 47.1
MELO3C010611.2 Cucumis melo HOM05D000654 ORTHO05D002330 8.1e-09 65.1 100 47.0
Gohir.A06G044900 Gossypium hirsutum HOM05D000654 ORTHO05D002330 8.1e-09 65.1 69 53.6
Gohir.D06G045400 Gossypium hirsutum HOM05D000654 ORTHO05D002330 8.1e-09 65.1 69 53.6
Lj2A608T38 Lonicera japonica HOM05D000654 ORTHO05D002330 8.1e-09 65.1 58 69.0
Oeu028235.1 Olea europaea HOM05D000654 ORTHO05D002330 8.1e-09 65.1 65 63.1
Sabra07G0081900 Salix brachista HOM05D000654 ORTHO05D002330 8.1e-09 65.1 55 65.5
CANSAT01G2067 Cannabis sativa HOM05D000654 ORTHO05D002330 1.1e-08 64.7 65 58.5
Cpa.g.sc64.89 Carica papaya HOM05D000654 ORTHO05D002330 1.1e-08 64.7 69 53.6
Gorai.009G245900 Gossypium raimondii HOM05D000654 ORTHO05D002330 1.1e-08 64.7 61 60.7
Gorai.010G050400 Gossypium raimondii HOM05D000654 ORTHO05D002330 1.4e-08 64.3 91 46.2
Potri.007G098500 Populus trichocarpa HOM05D000654 ORTHO05D002330 1.4e-08 64.3 55 63.6
SGA_v2.0_scaffold25G11129 Striga asiatica HOM05D000654 ORTHO05D002330 1.4e-08 64.3 81 50.6
DCAR_014389 Daucus carota HOM05D000654 ORTHO05D002330 1.8e-08 63.9 85 50.6
Oeu050104.2 Olea europaea HOM05D000654 ORTHO05D002330 1.8e-08 63.9 58 65.5
Potri.005G070400 Populus trichocarpa HOM05D000654 ORTHO05D002330 1.8e-08 63.9 65 56.9
AUR62006906 Chenopodium quinoa HOM05D000654 ORTHO05D002330 2.3e-08 63.5 63 60.3
CsaV3_6G034470 Cucumis sativus L. HOM05D000654 ORTHO05D002330 2.3e-08 63.5 100 46.0
Gohir.D05G237500 Gossypium hirsutum HOM05D000654 ORTHO05D002330 2.3e-08 63.5 55 63.6
Nn1g08795 Nelumbo nucifera HOM05D000654 ORTHO05D002330 2.3e-08 63.5 68 63.2
Atru.chr13.1463 Acer truncatum HOM05D000654 ORTHO05D002330 3.1e-08 63.2 70 52.9
Atru.chr13.1485 Acer truncatum HOM05D000654 ORTHO05D002330 3.1e-08 63.2 70 52.9
Atru.chr4.1113 Acer truncatum HOM05D000654 ORTHO05D002330 3.1e-08 63.2 60 63.3
MD08G1162500 Malus domestica HOM05D000654 ORTHO05D002330 3.1e-08 63.2 68 54.4
Manes.18G077439 Manihot esculenta HOM05D000654 ORTHO05D002330 3.1e-08 63.2 70 54.3
TAR625G0483 Trochodendron aralioides HOM05D000654 ORTHO05D002330 3.1e-08 63.2 65 64.6
PSO528G0099 Papaver somniferum HOM05D000654 ORTHO05D002330 4.0e-08 62.8 92 47.8
Thecc.01G142000 Theobroma cacao HOM05D000654 ORTHO05D002330 4.0e-08 62.8 55 67.3
Lsat_1_v5_gn_6_112901 Lactuca sativa HOM05D000654 ORTHO05D002330 5.2e-08 62.4 114 40.4
QL09p034567 Quercus lobata HOM05D000654 ORTHO05D002330 5.2e-08 62.4 64 53.1
Sc16g0009680 Simmondsia chinensis HOM05D000654 ORTHO05D002330 5.2e-08 62.4 65 61.5
TWI79G0039 Tripterygium wilfordii HOM05D000654 ORTHO05D002330 5.2e-08 62.4 55 65.5
CSS0013859 Camellia sinensis var. sinensis HOM05D000654 ORTHO05D002330 6.8e-08 62.0 91 46.2
Sabra05G0134500 Salix brachista HOM05D000654 ORTHO05D002330 6.8e-08 62.0 68 52.9
Thecc.08G125700 Theobroma cacao HOM05D000654 ORTHO05D002330 6.8e-08 62.0 65 53.8
Ciclev10000549m.g Citrus clementina HOM05D000654 ORTHO05D002330 8.9e-08 61.6 55 63.6
Eucgr.H05077 Eucalyptus grandis HOM05D000654 ORTHO05D002330 8.9e-08 61.6 55 61.8
Gohir.A05G235200 Gossypium hirsutum HOM05D000654 ORTHO05D002330 8.9e-08 61.6 54 63.0
Nn5g28299 Nelumbo nucifera HOM05D000654 ORTHO05D002330 8.9e-08 61.6 71 49.3
Nitab4.5_0010345g0020 Nicotiana tabacum HOM05D000654 ORTHO05D002330 8.9e-08 61.6 55 63.6
TWI60G0616 Tripterygium wilfordii HOM05D000654 ORTHO05D002330 8.9e-08 61.6 64 53.1
CSS0002986 Camellia sinensis var. sinensis HOM05D000654 ORTHO05D002330 1.2e-07 61.2 55 70.9
AUR62000554 Chenopodium quinoa HOM05D000654 ORTHO05D002330 1.2e-07 61.2 63 58.7
Sabra05G0057200 Salix brachista HOM05D000654 ORTHO05D002330 1.5e-07 60.8 55 58.2
TWI75G0583 Tripterygium wilfordii HOM05D000654 ORTHO05D002330 1.5e-07 60.8 56 64.3
Eucgr.F04348 Eucalyptus grandis HOM05D000654 ORTHO05D002330 2.0e-07 60.5 60 53.3
HanXRQChr15g0468981 Helianthus annuus HOM05D000654 ORTHO05D002330 2.6e-07 60.1 65 60.0
RcHm_v2.0_Chr6g0295851 Rosa chinensis HOM05D000654 ORTHO05D002330 2.6e-07 60.1 59 54.2
ClCG08G005650 Citrullus lanatus HOM05D000654 ORTHO05D002330 3.4e-07 59.7 100 43.0
DCAR_002180 Daucus carota HOM05D000654 ORTHO05D002330 3.4e-07 59.7 57 63.2
Nitab4.5_0000856g0180 Nicotiana tabacum HOM05D000654 ORTHO05D002330 3.4e-07 59.7 55 61.8
PSO170G6784 Papaver somniferum HOM05D000654 ORTHO05D002330 3.4e-07 59.7 66 54.5
Sed0008177 Sechium edule HOM05D000654 ORTHO05D002330 3.4e-07 59.7 102 43.1
Sed0013030 Sechium edule HOM05D000654 ORTHO05D002330 3.4e-07 59.7 100 43.0
COL.COLO4_08076 Corchorus olitorius HOM05D000654 ORTHO05D002330 4.4e-07 59.3 60 58.3
Duzib187G1539 Durio zibethinus HOM05D000654 ORTHO05D002330 4.4e-07 59.3 58 58.6
Hund07210 Selenicereus undatus HOM05D000654 ORTHO05D002330 4.4e-07 59.3 65 60.0
Oeu037846.2 Olea europaea HOM05D000654 ORTHO05D002330 5.8e-07 58.9 52 69.2
Ah.02g117680 Amaranthus hybridus HOM05D000654 ORTHO05D002330 7.6e-07 58.5 63 55.6
DCAR_030969 Daucus carota HOM05D000654 ORTHO05D002330 7.6e-07 58.5 57 63.2
Lsat_1_v5_gn_5_69380 Lactuca sativa HOM05D000654 ORTHO05D002330 7.6e-07 58.5 65 55.4
MBI09_g42045_MAGBIO Magnolia biondii HOM05D000654 ORTHO05D002330 9.9e-07 58.2 57 63.2
arahy.Tifrunner.gnm1.ann1.K0RA2B Arachis hypogaea HOM05D000654 ORTHO05D002330 1.3e-06 57.8 62 59.7
arahy.Tifrunner.gnm1.ann1.RFHL3Y Arachis hypogaea HOM05D000654 ORTHO05D002330 1.3e-06 57.8 62 59.7
CANSAT25G0926 Cannabis sativa HOM05D000654 ORTHO05D002330 1.3e-06 57.8 104 45.2
Gohir.D10G107200 Gossypium hirsutum HOM05D000654 ORTHO05D002330 1.3e-06 57.8 54 64.8
Gorai.011G117600 Gossypium raimondii HOM05D000654 ORTHO05D002330 1.3e-06 57.8 54 64.8
Cc07_g19530 Coffea canephora HOM05D000654 ORTHO05D002330 1.7e-06 57.4 56 64.3
Aa31LG5G15760 Aethionema arabicum HOM05D000654 ORTHO05D002330 2.9e-06 56.6 53 56.6
Carub.0003s0452 Capsella rubella HOM05D000654 ORTHO05D002330 2.9e-06 56.6 58 55.2
CDE08G1638 Ceratophyllum demersum HOM05D000654 ORTHO05D002330 2.9e-06 56.6 60 55.0
FAN23G0506 Fragaria x ananassa HOM05D000654 ORTHO05D002330 2.9e-06 56.6 60 60.0
Lj4g0021514 Lotus japonicus HOM05D000654 ORTHO05D002330 2.9e-06 56.6 57 61.4
PGSC0003DMG400003393 Solanum tuberosum HOM05D000654 ORTHO05D002330 2.9e-06 56.6 55 63.6
MSTRG.3599 Avicennia marina HOM05D000654 ORTHO05D002330 3.7e-06 56.2 66 59.1
EL10Ac4g09664 Beta vulgaris HOM05D000654 ORTHO05D002330 3.7e-06 56.2 66 51.5
Ciclev10000438m.g Citrus clementina HOM05D000654 ORTHO05D002330 3.7e-06 56.2 65 50.8
FAN28G2592 Fragaria x ananassa HOM05D000654 ORTHO05D002330 3.7e-06 56.2 65 58.5
Gohir.A10G067800 Gossypium hirsutum HOM05D000654 ORTHO05D002330 3.7e-06 56.2 54 63.0
Prupe.4G281900 Prunus persica HOM05D000654 ORTHO05D002330 3.7e-06 56.2 65 56.9
THA.LOC104824769 Tarenaya hassleriana HOM05D000654 ORTHO05D002330 3.7e-06 56.2 68 50.0
ECA233G0798 Erigeron canadensis HOM05D000654 ORTHO05D002330 4.9e-06 55.8 51 62.7
MD15G1138800 Malus domestica HOM05D000654 ORTHO05D002330 4.9e-06 55.8 65 56.9
PGR102G0179 Punica granatum HOM05D000654 ORTHO05D002330 4.9e-06 55.8 55 56.4
Hund21790 Selenicereus undatus HOM05D000654 ORTHO05D002330 4.9e-06 55.8 63 54.0
Sopen12g027110 Solanum pennellii HOM05D000654 ORTHO05D002330 4.9e-06 55.8 65 58.5
AT3G05270 Arabidopsis thaliana HOM05D000654 ORTHO05D002330 6.4e-06 55.5 58 53.4
DCAR_016683 Daucus carota HOM05D000654 ORTHO05D002330 6.4e-06 55.5 68 52.9
PGR044G0566 Punica granatum HOM05D000654 ORTHO05D002330 6.4e-06 55.5 65 49.2
SGA_v2.0_scaffold28G11995 Striga asiatica HOM05D000654 ORTHO05D002330 6.4e-06 55.5 71 49.3
AL3G15710 Arabidopsis lyrata HOM05D000654 ORTHO05D002330 8.4e-06 55.1 58 53.4
AT1G77580 Arabidopsis thaliana HOM05D000654 ORTHO05D002330 8.4e-06 55.1 59 55.9
CDE02G3776 Ceratophyllum demersum HOM05D001512 ORTHO05D001574 8.4e-06 55.1 58 56.9


User provided reference genes

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